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Notice:
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Suspension of shipments during Golden Week Holidays: From 29 April to 13 May, deadline 16 April.
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| NIG-RNAi Strains Detail |
| Request : Click the "Order" button to request for this stock |
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| Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
| Stock ID |
6767R-1 |
| Symbol |
CG6767 |
Full Name |
CG6767 |
| CG No |
CG6767 |
Old CG No |
CG6767 |
| Synonyms |
CG6767 |
| Accession No (Link to NCBI) |
NM_140088.2 |
| Inserted Chr. |
ll |
| Insertional Mutation |
|
| Phenotype induced by Act5C-GAL4 at 28 degrees |
lethal |
| Map Viewer |
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Reference
[Please submit your publication]
|
Tiwari P, Kumar A, Das RN, Malhotra V, VijayRaghavan K.<br> A Tendon Cell Specific RNAi Screen Reveals Novel Candidates Essential for Muscle Tendon Interaction.<br> PLoS One (2015) 10(10) e0140976
[
PubMed ID = 26488612
]
[
RRC reference
]
Swarup S, Pradhan-Sundd T, Verheyen EM.<br> Genome-wide identification of phospho-regulators of Wnt signaling in Drosophila.<br> Development (2015) 142(8) 1502-15
[
PubMed ID = 25852200
]
[
RRC reference
]
Umemori M, Habara O, Iwata T, Maeda K, Nishinoue K, Okabe A, Takemura M, Takahashi K, Saigo K, Ueda R, Adachi-Yamada T.<br> RNAi-mediated knockdown showing impaired cell survival in Drosophila wing imaginal disc.<br> Gene Regul Syst Bio (2009) 3 11-20
[
PubMed ID = 19838331
]
[
RRC reference
]
|
| Comment |
|
| Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
| Primer Seq. 5' |
aaggcctacatggccggaccgTCGATCTCGGCAAGGTGGTTA |
| Primer Seq. 3' |
aatctagaggtaccCAGAGCGAACTCCACGTTCAG |
| Predicted Fragment Size |
500 |
| IR fragment full Seq |
0001 TCGATCTCGG CAAGGTGGTT ACGAAGAAGT TCAGCAACTT GGAGACCTGT GTGGAAATTG
0061 GGGAATCGGT GCGCGGCGAG GATGTGTACA TCGTGCAATC GGGATCCGGC GAGATCAACG
0121 ATAACTTGAT GGAGCTGCTG ATCATGATCA ATGCGTGCAA AATTGCCTCA GCCTCTCGTG
0181 TTACAGCTGT GATTCCTTGC TTTCCATATG CCCGCCAAGA TAAAAAAGAC AAGAGTCGTG
0241 CGCCCATCTC GGCCAAATTG GTGGCCAACA TGCTGTCCGT TGCTGGAGCG GATCACATCA
0301 TCACCATGGA TCTGCACGCC TCACAGATTC AGGGCTTCTT TGATATACCA GTTGATAATC
0361 TCTNATGcCG AGCCGGCGGT ACTCAAGTGG ATCAAGGAGA ACATTCCCGA GTGGAAGAAC
0421 TCGATCATTG TGTCGCCCGA TGCTgGCGGT GCCAAGCGTG TCACCTCAAT TGCCGATCGA
0481 CTGAACGTGG AGTTCGCTCT G |
| in silico PCR Fragment |
0001 TCGATCTCGG CAAGGTGGTT ACGAAGAAGT TCAGCAACTT GGAGACCTGT GTGGAAATTG
0061 GGGAATCGGT GCGCGGCGAG GATGTGTACA TCGTGCAATC GGGATCCGGC GAGATCAACG
0121 ATAACTTGAT GGAGCTGCTG ATCATGATCA ATGCGTGCAA AATTGCCTCA GCCTCTCGTG
0181 TTACAGCTGT GATTCCTTGC TTTCCATATG CCCGCCAAGA TAAAAAAGAC AAGAGTCGTG
0241 CGCCCATCTC GGCCAAATTG GTGGCCAACA TGCTGTCCGT TGCTGGAGCG GATCACATCA
0301 TCACCATGGA TCTGCACGCC TCACAGATTC AGGGCTTCTT TGATATACCA GTTGATAATC
0361 TCT-ATGCCG AGCCGGCGGT ACTCAAGTGG ATCAAGGAGA ACATTCCCGA GTGGAAGAAC
0421 TCGATCATTG TGTCGCCCGA TGCTGGCGGT GCCAAGCGTG TCACCTCAAT TGCCGATCGA
0481 CTGAACGTGG AGTTCGCTCT G |
| Assemble Data |
<PRE>
6767R-1.IR_full 1 TCGATCTCGGCAAGGTGGTTACGAAGAAGTTCAGCAACTTGGAGACCTGTGTGGAAATTG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
6767R-1.in silico 1 TCGATCTCGGCAAGGTGGTTACGAAGAAGTTCAGCAACTTGGAGACCTGTGTGGAAATTG 60
6767R-1.IR_full 61 GGGAATCGGTGCGCGGCGAGGATGTGTACATCGTGCAATCGGGATCCGGCGAGATCAACG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
6767R-1.in silico 61 GGGAATCGGTGCGCGGCGAGGATGTGTACATCGTGCAATCGGGATCCGGCGAGATCAACG 120
6767R-1.IR_full 121 ATAACTTGATGGAGCTGCTGATCATGATCAATGCGTGCAAAATTGCCTCAGCCTCTCGTG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
6767R-1.in silico 121 ATAACTTGATGGAGCTGCTGATCATGATCAATGCGTGCAAAATTGCCTCAGCCTCTCGTG 180
6767R-1.IR_full 181 TTACAGCTGTGATTCCTTGCTTTCCATATGCCCGCCAAGATAAAAAAGACAAGAGTCGTG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
6767R-1.in silico 181 TTACAGCTGTGATTCCTTGCTTTCCATATGCCCGCCAAGATAAAAAAGACAAGAGTCGTG 240
6767R-1.IR_full 241 CGCCCATCTCGGCCAAATTGGTGGCCAACATGCTGTCCGTTGCTGGAGCGGATCACATCA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
6767R-1.in silico 241 CGCCCATCTCGGCCAAATTGGTGGCCAACATGCTGTCCGTTGCTGGAGCGGATCACATCA 300
6767R-1.IR_full 301 TCACCATGGATCTGCACGCCTCACAGATTCAGGGCTTCTTTGATATACCAGTTGATAATC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
6767R-1.in silico 301 TCACCATGGATCTGCACGCCTCACAGATTCAGGGCTTCTTTGATATACCAGTTGATAATC 360
6767R-1.IR_full 361 TCT<span class="snp"><tt>N</tt></span>ATGCCGAGCCGGCGGTACTCAAGTGGATCAAGGAGAACATTCCCGAGTGGAAGAAC 420
|||<span class="snp"><tt> </tt></span>||||||||||||||||||||||||||||||||||||||||||||||||||||||||
6767R-1.in silico 361 TCT<span class="snp"><tt>-</tt></span>ATGCCGAGCCGGCGGTACTCAAGTGGATCAAGGAGAACATTCCCGAGTGGAAGAAC 420
6767R-1.IR_full 421 TCGATCATTGTGTCGCCCGATGCTGGCGGTGCCAAGCGTGTCACCTCAATTGCCGATCGA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
6767R-1.in silico 421 TCGATCATTGTGTCGCCCGATGCTGGCGGTGCCAAGCGTGTCACCTCAATTGCCGATCGA 480
6767R-1.IR_full 481 CTGAACGTGGAGTTCGCTCTG 501
|||||||||||||||||||||
6767R-1.in silico 481 CTGAACGTGGAGTTCGCTCTG 501
</PRE>
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| Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
|
| cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
| 100 |
551 |
0 |
0 |
0 |
NM_168360.1 |
CG6767-RB, transcript variant B (CG6767), mRNA |
| 84.39 |
465 |
3 |
2 |
2 |
NM_140088.2 |
CG6767-RA, transcript variant A (CG6767), mRNA |
| 0 |
0 |
8 |
9 |
10 |
NM_170510.1 |
CG2246-RA, transcript variant A (CG2246), mRNA |
| 0 |
0 |
8 |
9 |
10 |
NM_170511.1 |
CG2246-RC, transcript variant C (CG2246), mRNA |
| 0 |
0 |
8 |
9 |
10 |
NM_170507.1 |
CG2246-RB, transcript variant B (CG2246), mRNA |
| 0 |
0 |
8 |
9 |
10 |
NM_170508.1 |
CG2246-RD, transcript variant D (CG2246), mRNA |
| 0 |
0 |
8 |
9 |
10 |
NM_170509.1 |
CG2246-RF, transcript variant F (CG2246), mRNA |
| 0 |
0 |
8 |
9 |
10 |
NM_143556.2 |
CG2246-RE, transcript variant E (CG2246), mRNA |
| 0 |
0 |
4 |
2 |
5 |
NM_135962.1 |
CG17905-RA (CG17905), mRNA |
| 0 |
0 |
2 |
2 |
4 |
NM_132185.1 |
CG15325-RA (CG15325), mRNA |
| 0 |
0 |
1 |
9 |
3 |
NM_078745.2 |
CG12676-RA (ed), mRNA |
| 0 |
0 |
1 |
3 |
4 |
NM_080148.2 |
CG2522-RA (Gtp-bp), mRNA |
| 0 |
0 |
1 |
3 |
3 |
NM_135386.3 |
CG13401-RA, transcript variant A (U26), mRNA |
| 0 |
0 |
1 |
3 |
3 |
NM_205938.1 |
CG13401-RB, transcript variant B (U26), mRNA |
| 0 |
0 |
1 |
2 |
4 |
NM_132206.1 |
CG2253-RA (Upf2), mRNA |
| 0 |
0 |
1 |
2 |
3 |
NM_079545.2 |
CG1031-RA (alpha-Est1), mRNA |
| 0 |
0 |
1 |
2 |
2 |
NM_132917.1 |
CG13010-RA (CG13010), mRNA |
| 0 |
0 |
1 |
2 |
2 |
NM_164371.1 |
CG11455-RA, transcript variant A (CG11455), mRNA |
| 0 |
0 |
1 |
2 |
2 |
NM_164372.1 |
CG11455-RB, transcript variant B (CG11455), mRNA |
| 0 |
0 |
1 |
2 |
2 |
NM_134664.1 |
CG17075-RA (CG17075), mRNA |
| 0 |
0 |
1 |
1 |
6 |
NM_132225.1 |
CG18262-RA (CG18262), mRNA |
| 0 |
0 |
0 |
6 |
6 |
NM_132056.3 |
CG4790-RA (fs(1)M3), mRNA |
| 0 |
0 |
0 |
5 |
19 |
NM_001032051.1 |
CG33715-RD, transcript variant D (Msp-300), mRNA |
| 0 |
0 |
0 |
5 |
6 |
NM_136595.1 |
CG13744-RA (CG13744), mRNA |
| 0 |
0 |
0 |
5 |
2 |
NM_132151.1 |
CG14427-RA (CG14427), mRNA |
| 0 |
0 |
0 |
4 |
9 |
NM_142312.1 |
CG14905-RA (CG14905), mRNA |
| 0 |
0 |
0 |
4 |
6 |
NM_078535.2 |
CG1634-RA, transcript variant A (Nrg), mRNA |
| 0 |
0 |
0 |
4 |
6 |
NM_167160.1 |
CG1634-RB, transcript variant B (Nrg), mRNA |
| 0 |
0 |
0 |
4 |
6 |
NM_206657.1 |
CG1634-RC, transcript variant C (Nrg), mRNA |
| 0 |
0 |
0 |
4 |
5 |
NM_078772.2 |
CG13772-RA (neuroligin), mRNA |
|
| Wing Disc |
GFP
 |
Puc
 |
Caspase
 |
DAPI
 |
Merge
 |
Figure
 |
JNK signal
| N |
 |
| |
|
| DB |
 |
| +- |
|
| DC |
 |
| +- |
|
| DM |
 |
| +- |
|
| VM |
 |
| +- |
|
| VB |
 |
| |
|
|
Caspase-3 signal
| N |
|
| + |
|
| DB |
|
| + |
|
| DC |
|
| ++ |
|
| DM |
|
| + |
|
| VM |
|
| + |
|
| VB |
|
| + |
|
|
| Dcompartment |
|
Penetrance |
| + |
|
|
|
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|
Pathways (updated: 2024/04/26)
|
| KEGG Pathway |
dme00030
:
Pentose phosphate pathway
dme00230
:
Purine metabolism
dme01100
:
Metabolic pathways
dme01200
:
Carbon metabolism
dme01230
:
Biosynthesis of amino acids
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