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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 5904R-2 
 Symbol mRpS31  Full Name mitochondrial ribosomal protein S31 
 CG No CG5904  Old CG No CG5904 
 Synonyms RpS31, MRP-S31, CG5904, mRpS31 
 Accession No (Link to NCBI) NM_079376.2 
 Inserted Chr. lll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees lethal 
 Map Viewer
 Reference
[Please submit your publication] 		 
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5' 
aaggcctacatggccggaccgGATGGATACTCCTCTTCGGAC 
 Primer Seq. 3' 
aatctagaggtaccCGATTCTGTGGCTTGAATCTG 
 Predicted Fragment Size 
500 
 IR fragment full Seq 
0001 GATGGATACT CCTCTTCGGA CGACGAAAAG CCCACGAAGA AGAAGGAGGA ACCTGTGGAA 
0061 ACGGCGGCCC AGCgGCTGAA CCGCCTGTTG GGCACCATGC AGGCCACGGA TCAGCTCTCG 
0121 GCATCGGACT TTCCACGTCC TGGTGATGCC AACAGGAAGC GGAGGGAGGC CCAGAAACAG 
0181 GAGGCAGCCG CCAAGAATGT TCTAACTGCG GCCAAGAACA TTGCTAGCAT GCTGGGCACC 
0241 AGTGAGAGCG ACAAGAAGCA GACAGAGTCT GAGCTATTGG CCAAACTCCT TGGCCATGGA 
0301 AGCGAGTCCT CTTCAGCAGC GACCGGAGAA AATCAGACGG CGGATGTTTC GGGATCTCCT 
0361 TCTGGTGATA AGGAACTCAA TCTGAGTGAT ATTATCGTGG GCATGAAGAT CGATCGTCGT 
0421 CAGCAGCCGC AGCAGGTGGA GCAGACCCGC GGCGAGTACG TTCGCCGCTC GCTGGCTTCC 
0481 AGATTCAAGC CACAGAATCG  
 in silico PCR Fragment 
0001 GATGGATACT CCTCTTCGGA CGACGAAAAG CCCACGAAGA AGAAGGAGGA ACCTGTGGAA 
0061 ACGGCGGCCC AGCGGCTGAA CCGCCTGTTG GGCACCATGC AGGCCACGGA TCAGCTCTCG 
0121 GCATCGGACT TTCCACGTCC TGGTGATGCC AACAGGAAGC GGAGGGAGGC CCAGAAACAG 
0181 GAGGCAGCCG CCAAGAATGT TCTAACTGCG GCCAAGAACA TTGCTAGCAT GCTGGGCACC 
0241 AGTGAGAGCG ACAAGAAGCA GACAGAGTCT GAGCTATTGG CCAAACTCCT TGGCCATGGA 
0301 AGCGAGTCCT CTTCAGCAGC GACCGGAGAA AATCAGACGG CGGATGTTTC GGGATCTCCT 
0361 TCTGGTGATA AGGAACTCAA TCTGAGTGAT ATTATCGTGG GCATGAAGAT CGATCGTCGT 
0421 CAGCAGCCGC AGCAGGTGGA GCAGACCCGC GGCGAGTACG TTCGCCGCTC GCTGGCTTCC 
0481 AGATTCAAGC CACAGAATCG  
 Assemble Data 
<PRE>

5904R-2.IR_full       1   GATGGATACTCCTCTTCGGACGACGAAAAGCCCACGAAGAAGAAGGAGGAACCTGTGGAA 60
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5904R-2.in silico     1   GATGGATACTCCTCTTCGGACGACGAAAAGCCCACGAAGAAGAAGGAGGAACCTGTGGAA 60


5904R-2.IR_full       61  ACGGCGGCCCAGCGGCTGAACCGCCTGTTGGGCACCATGCAGGCCACGGATCAGCTCTCG 120
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5904R-2.in silico     61  ACGGCGGCCCAGCGGCTGAACCGCCTGTTGGGCACCATGCAGGCCACGGATCAGCTCTCG 120


5904R-2.IR_full       121 GCATCGGACTTTCCACGTCCTGGTGATGCCAACAGGAAGCGGAGGGAGGCCCAGAAACAG 180
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5904R-2.in silico     121 GCATCGGACTTTCCACGTCCTGGTGATGCCAACAGGAAGCGGAGGGAGGCCCAGAAACAG 180


5904R-2.IR_full       181 GAGGCAGCCGCCAAGAATGTTCTAACTGCGGCCAAGAACATTGCTAGCATGCTGGGCACC 240
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5904R-2.in silico     181 GAGGCAGCCGCCAAGAATGTTCTAACTGCGGCCAAGAACATTGCTAGCATGCTGGGCACC 240


5904R-2.IR_full       241 AGTGAGAGCGACAAGAAGCAGACAGAGTCTGAGCTATTGGCCAAACTCCTTGGCCATGGA 300
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5904R-2.in silico     241 AGTGAGAGCGACAAGAAGCAGACAGAGTCTGAGCTATTGGCCAAACTCCTTGGCCATGGA 300


5904R-2.IR_full       301 AGCGAGTCCTCTTCAGCAGCGACCGGAGAAAATCAGACGGCGGATGTTTCGGGATCTCCT 360
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5904R-2.in silico     301 AGCGAGTCCTCTTCAGCAGCGACCGGAGAAAATCAGACGGCGGATGTTTCGGGATCTCCT 360


5904R-2.IR_full       361 TCTGGTGATAAGGAACTCAATCTGAGTGATATTATCGTGGGCATGAAGATCGATCGTCGT 420
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5904R-2.in silico     361 TCTGGTGATAAGGAACTCAATCTGAGTGATATTATCGTGGGCATGAAGATCGATCGTCGT 420


5904R-2.IR_full       421 CAGCAGCCGCAGCAGGTGGAGCAGACCCGCGGCGAGTACGTTCGCCGCTCGCTGGCTTCC 480
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5904R-2.in silico     421 CAGCAGCCGCAGCAGGTGGAGCAGACCCGCGGCGAGTACGTTCGCCGCTCGCTGGCTTCC 480


5904R-2.IR_full       481 AGATTCAAGCCACAGAATCG 500
                          ||||||||||||||||||||
5904R-2.in silico     481 AGATTCAAGCCACAGAATCG 500

</PRE>
 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  0  0  0  NM_079376.2  CG5904-RA (mRpS31), mRNA 
0.2   1  2  3  3  NM_134816.2  CG31679-RA (CG31679), mRNA 
0   0  5  3  7  NM_138240.1  CG9194-RA (CG9194), mRNA 
0   0  4  3  2  NM_206391.1  CG33256-RA (CG33256), mRNA 
0   0  3  12  21  NM_133108.2  CG32542-RA (CG32542), mRNA 
0   0  3  6  15  NM_139493.2  CG2083-RA (CG2083), mRNA 
0   0  3  4  16  NM_167035.1  CG4165-RB, transcript variant B (CG4165), mRNA 
0   0  3  4  16  NM_167036.1  CG4165-RC, transcript variant C (CG4165), mRNA 
0   0  3  4  16  NM_131992.2  CG4165-RA, transcript variant A (CG4165), mRNA 
0   0  3  4  16  NM_167037.1  CG4165-RD, transcript variant D (CG4165), mRNA 
0   0  2  4  8  NM_079700.1  CG3723-RA (Dhc93AB), mRNA 
0   0  2  3  4  NM_136970.2  CG12442-RA (CG12442), mRNA 
0   0  2  3  2  NM_206287.1  CG8571-RB, transcript variant B (smid), mRNA 
0   0  2  3  2  NM_079235.2  CG8571-RA, transcript variant A (smid), mRNA 
0   0  2  2  9  NM_168739.2  CG32180-RC, transcript variant C (Eip74EF), mRNA 
0   0  2  2  9  NM_168740.2  CG32180-RA, transcript variant A (Eip74EF), mRNA 
0   0  2  2  9  NM_168741.2  CG32180-RB, transcript variant B (Eip74EF), mRNA 
0   0  2  2  9  NM_001014590.1  CG32180-RD, transcript variant D (Eip74EF), mRNA 
0   0  2  2  6  NM_176735.1  CG33206-RB, transcript variant B (l(1)G0168), mRNA 
0   0  2  2  6  NM_176734.1  CG33206-RA, transcript variant A (l(1)G0168), mRNA 
0   0  2  2  3  NM_144251.1  CG14809-RA (CG14809), mRNA 
0   0  1  7  3  NM_206405.1  CG33286-RA (CG33286), mRNA 
0   0  1  5  8  NM_143018.2  CG5794-RD, transcript variant D (CG5794), mRNA 
0   0  1  5  7  NM_170158.1  CG5794-RB, transcript variant B (CG5794), mRNA 
0   0  1  5  6  NM_206564.1  CG5794-RE, transcript variant E (CG5794), mRNA 
0   0  1  5  3  NM_143713.2  CG2173-RA (Rs1), mRNA 
0   0  1  4  3  NM_140256.4  CG11597-RA, transcript variant A (CG11597), mRNA 
0   0  1  4  3  NM_001043137.1  CG11597-RB, transcript variant B (CG11597), mRNA 
0   0  1  3  6  NM_057841.3  CG5102-RA (da), mRNA 
0   0  1  3  4  NM_001031899.1  CG33639-RA (CG33639), mRNA 
 Pathways (updated: 2024/04/26)
 KEGG Pathway

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