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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 5790R-3 
 Symbol CG5790  Full Name CG5790 
 CG No CG5790  Old CG No CG5790 
 Synonyms CG5790 
 Accession No (Link to NCBI) NM_136032.2 
 Inserted Chr. lll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees viable 
 Map Viewer
 Reference
[Please submit your publication]
Rauskolb C, Pan G, Reddy BV, Oh H, Irvine KD.
Zyxin links fat signaling to the hippo pathway.
PLoS Biol. (2011) 9(6) e1000624 [ PubMed ID = 21666802 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgGAAAGGTTCGTTCCGATGGCA 
 Primer Seq. 3'
aatctagaggtaccGGCATGATAAAGGCCACGTTG 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 GAAAGGTTCG TTCCGATGGC ATCCGGAACT ATGCCTTCCG TTTCGGGCAC TAACCATCAT 
0061 TCTAGGCATC AACAGCTCCT TCTCCAACAA GCTCCCAAGT GCACTGCCGA TCTCAACGAG 
0121 AAATTAGTAA AAATCAATCG GCAAAACGCC AATAAGGAGC TATCCACCAT TCAGGCAAAG 
0181 GATATGCAAT CCGTTGATAA AAACGAAGAG GCCCTAAAAG AATTGCAGGA GAGCATTCCG 
0241 GAAATCAACA AAATCTTCGA TGTGCACTGT CGCATCGGCA GTGGAACCTT CAGCACAGTT 
0301 CTCTTGGGAA CCCTGCAGCG GGAAAGGGGT CTCGTGGAAA CCCAAAGGAG GAGATTCGCC 
0361 ATCAAACATC ATAATCCCAC AAATCATCCG GAGAGGATTC TTAGAGAGTT GGAGTGCATG 
0421 TATCGCATTG GTGGAGTGGA AAATGTAATC GGAATTAATT GCTGCATTAG ATATAACGAC 
0481 AACGTGGCCT TTATCATGCC  
 in silico PCR Fragment
0001 GAAAGGTTCG TTCCGATGGC ATCCGGAACT ATGCCTTCCG TTTCGGGCAC TAACCATCAT 
0061 TCTAGGCATC AACAGCTCCT TCTCCAACAA GCTCCCAAGT GCACTGCCGA TCTCAACGAG 
0121 AAATTAGTAA AAATCAATCG GCAAAACGCC AATAAGGAGC TATCCACCAT TCAGGCAAAG 
0181 GATATGCAAT CCGTTGATAA AAACGAAGAG GCCCTAAAAG AATTGCAGGA GAGCATTCCG 
0241 GAAATCAACA AAATCTTCGA TGTGCACTGT CGCATCGGCA GTGGAACCTT CAGCACAGTT 
0301 CTCTTGGGAA CCCTGCAGCG GGAAAGGGGT CTCGTGGAAA CCCAAAGGAG GAGATTCGCC 
0361 ATCAAACATC ATAATCCCAC AAATCATCCG GAGAGGATTC TTAGAGAGTT GGAGTGCATG 
0421 TATCGCATTG GTGGAGTGGA AAATGTAATC GGAATTAATT GCTGCATTAG ATATAACGAC 
0481 AACGTGGCCT TTATCATGCC  
 Assemble Data

5790R-3.IR_full       1   GAAAGGTTCGTTCCGATGGCATCCGGAACTATGCCTTCCGTTTCGGGCACTAACCATCAT 60
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5790R-3.in silico     1   GAAAGGTTCGTTCCGATGGCATCCGGAACTATGCCTTCCGTTTCGGGCACTAACCATCAT 60


5790R-3.IR_full       61  TCTAGGCATCAACAGCTCCTTCTCCAACAAGCTCCCAAGTGCACTGCCGATCTCAACGAG 120
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5790R-3.in silico     61  TCTAGGCATCAACAGCTCCTTCTCCAACAAGCTCCCAAGTGCACTGCCGATCTCAACGAG 120


5790R-3.IR_full       121 AAATTAGTAAAAATCAATCGGCAAAACGCCAATAAGGAGCTATCCACCATTCAGGCAAAG 180
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5790R-3.in silico     121 AAATTAGTAAAAATCAATCGGCAAAACGCCAATAAGGAGCTATCCACCATTCAGGCAAAG 180


5790R-3.IR_full       181 GATATGCAATCCGTTGATAAAAACGAAGAGGCCCTAAAAGAATTGCAGGAGAGCATTCCG 240
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5790R-3.in silico     181 GATATGCAATCCGTTGATAAAAACGAAGAGGCCCTAAAAGAATTGCAGGAGAGCATTCCG 240


5790R-3.IR_full       241 GAAATCAACAAAATCTTCGATGTGCACTGTCGCATCGGCAGTGGAACCTTCAGCACAGTT 300
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5790R-3.in silico     241 GAAATCAACAAAATCTTCGATGTGCACTGTCGCATCGGCAGTGGAACCTTCAGCACAGTT 300


5790R-3.IR_full       301 CTCTTGGGAACCCTGCAGCGGGAAAGGGGTCTCGTGGAAACCCAAAGGAGGAGATTCGCC 360
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5790R-3.in silico     301 CTCTTGGGAACCCTGCAGCGGGAAAGGGGTCTCGTGGAAACCCAAAGGAGGAGATTCGCC 360


5790R-3.IR_full       361 ATCAAACATCATAATCCCACAAATCATCCGGAGAGGATTCTTAGAGAGTTGGAGTGCATG 420
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5790R-3.in silico     361 ATCAAACATCATAATCCCACAAATCATCCGGAGAGGATTCTTAGAGAGTTGGAGTGCATG 420


5790R-3.IR_full       421 TATCGCATTGGTGGAGTGGAAAATGTAATCGGAATTAATTGCTGCATTAGATATAACGAC 480
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5790R-3.in silico     421 TATCGCATTGGTGGAGTGGAAAATGTAATCGGAATTAATTGCTGCATTAGATATAACGAC 480


5790R-3.IR_full       481 AACGTGGCCTTTATCATGCC 500
                          ||||||||||||||||||||
5790R-3.in silico     481 AACGTGGCCTTTATCATGCC 500

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  NM_136032.2  CG5790-RA (CG5790), mRNA 
0   NM_137697.2  CG9353-RA (mRpL54), mRNA 
0   NM_001014621.1  CG8651-RE, transcript variant E (trx), mRNA 
0   NM_134282.1  CG8651-RA, transcript variant A (trx), mRNA 
0   NM_057422.2  CG8651-RB, transcript variant B (trx), mRNA 
0   NM_057421.2  CG8651-RD, transcript variant D (trx), mRNA 
0   NM_078868.2  CG5545-RA (Oli), mRNA 
0   NM_134281.1  CG8651-RC, transcript variant C (trx), mRNA 
0   NM_132758.1  CG9504-RA (Eo), mRNA 
0   NM_136458.2  CG30494-RA (CG30494), mRNA 
0   NM_132301.3  CG7065-RA (CG7065), mRNA 
0   NM_079490.2  CG5837-RA (Hem), mRNA 
0   NM_137918.2  CG12192-RA (Klp59D), mRNA 
0   NM_057643.2  CG10844-RA, transcript variant A (Rya-r44F), mRNA 
0   NM_057644.2  CG10844-RB, transcript variant B (Rya-r44F), mRNA 
0   NM_057645.2  CG10844-RC, transcript variant C (Rya-r44F), mRNA 
0   NM_057646.2  CG10844-RD, transcript variant D (Rya-r44F), mRNA 
0   11  NM_169023.1  CG31536-RB, transcript variant B (Cdep), mRNA 
0   11  NM_001043211.1  CG31536-RE, transcript variant E (Cdep), mRNA 
0   11  NM_169022.1  CG31536-RA, transcript variant A (Cdep), mRNA 
0   10  NM_167189.2  CG32705-RA (CG32705), mRNA 
0   NM_132944.2  CG13003-RA (CG13003), mRNA 
0   NM_206754.1  CG9177-RG, transcript variant G (eIF5), mRNA 
0   NM_167477.1  CG9177-RA, transcript variant A (eIF5), mRNA 
0   NM_132870.3  CG9177-RB, transcript variant B (eIF5), mRNA 
0   NM_206758.1  CG9177-RC, transcript variant C (eIF5), mRNA 
0   NM_135990.2  CG6860-RB, transcript variant B (CG6860), mRNA 
0   NM_001014479.1  CG33529-RB, transcript variant B (Rapgap1), mRNA 
0   NM_001014478.1  CG33529-RA, transcript variant A (Rapgap1), mRNA 
0   NM_165212.1  CG6860-RA, transcript variant A (CG6860), mRNA 

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