National Institute of Genetics
Contact us      Quick Search       
NIG-Fly - Fly Stocks of National Institute of Genetics (NIG) Drosophila strain -NIG-Fly - Fly Stocks of National Institute of Genetics (NIG) Drosophila strain -NIG-Fly - Fly Stocks of National Institute of Genetics (NIG) Drosophila strain -
Home Home
Japanese | English  
Notice:

Suspension of shipments during Golden Week Holidays: From 29 April to 13 May, deadline 16 April.
NIG-RNAi Strains Detail
Request : Click the "Order" button to request for this stock   request request_help.gif
Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 5567R-2 
 Symbol CG5567  Full Name CG5567 
 CG No CG5567  Old CG No CG5567 
 Synonyms CG5567 
 Accession No (Link to NCBI) NM_140758.2 
 Inserted Chr. ll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees viable 
 Map Viewer
 Reference
[Please submit your publication] 		 
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5' 
aaggcctacatggccggaccgCAACATGTACAAGCAGTCGTG 
 Primer Seq. 3' 
aatctagaggtaccTGAAGTGTTCGTCGAAGCCAA 
 Predicted Fragment Size 
500 
 IR fragment full Seq 
0001 CAACATGTAC AAGCAGTCGT GCACCAATCT CCTGGAATTA TCCTCCGCCA AGGTGACCGA 
0061 GTGGCTAGCA GGCTTCGACA GTGTAATAAC CGACTGCGAT GGTGTCCTTT GGATCTATGG 
0121 CCAGGcCCTG GAGGGCTCTG TGGATGTGAT GAACCAGTTG AAGGGTATGG GAAAGTCGAT 
0181 CTACTTTTGC ACTAACAACT CGACGAAGAC CCGGTCGGAA CTTCTCAAGA AAGGCGTCGA 
0241 ACTGGGCTTT CATATCAAGG AGAATGGCAT TATATCAACG GCCCATGCCA CAGCTGCGTA 
0301 TCTGAAACGA CGGAACTTCA GCAAGCGGGT ATTTGTGATC GGAAGCGAGG GAATCACCAA 
0361 GGAACTGNGA CgNCGTGGGC ATTCAGCACA CTGAGGTGGG CCCGGAACCC ATGAAGGGAT 
0421 CGCTGGCCGA GTTCATGGCA CAGCATTTAA AACTGGACAC GGACATCGGA GCCGTGGTCG 
0481 TTGGCTTCGA CGAACACTTC A 
 in silico PCR Fragment 
0001 CAACATGTAC AAGCAGTCGT GCACCAATCT CCTGGAATTA TCCTCCGCCA AGGTGACCGA 
0061 GTGGCTAGCA GGCTTCGACA GTGTAATAAC CGACTGCGAT GGTGTCCTTT GGATCTATGG 
0121 CCAGGCCCTG GAGGGCTCTG TGGATGTGAT GAACCAGTTG AAGGGTATGG GAAAGTCGAT 
0181 CTACTTTTGC ACTAACAACT CGACGAAGAC CCGGTCGGAA CTTCTCAAGA AAGGCGTCGA 
0241 ACTGGGCTTT CATATCAAGG AGAATGGCAT TATATCAACG GCCCATGCCA CAGCTGCGTA 
0301 CCTGAAACGA CGGAACTTCA GCAAGCGGGT ATTTGTGATC GGAAGCGAGG GAATCACCAA 
0361 GGAACTG-GA CGCCGTGGGC ATTCAGCACA CTGAGGTGGG CCCGGAACCC ATGAAGGGAT 
0421 CGCTGGCCGA GTTCATGGCA CAGCATTTAA AACTGGACAC GGACATCGGA GCCGTGGTCG 
0481 TTGGCTTCGA CGAACACTTC A 
 Assemble Data 
<PRE>

5567R-2.IR_full       1   CAACATGTACAAGCAGTCGTGCACCAATCTCCTGGAATTATCCTCCGCCAAGGTGACCGA 60
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5567R-2.in silico     1   CAACATGTACAAGCAGTCGTGCACCAATCTCCTGGAATTATCCTCCGCCAAGGTGACCGA 60


5567R-2.IR_full       61  GTGGCTAGCAGGCTTCGACAGTGTAATAACCGACTGCGATGGTGTCCTTTGGATCTATGG 120
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5567R-2.in silico     61  GTGGCTAGCAGGCTTCGACAGTGTAATAACCGACTGCGATGGTGTCCTTTGGATCTATGG 120


5567R-2.IR_full       121 CCAGGCCCTGGAGGGCTCTGTGGATGTGATGAACCAGTTGAAGGGTATGGGAAAGTCGAT 180
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5567R-2.in silico     121 CCAGGCCCTGGAGGGCTCTGTGGATGTGATGAACCAGTTGAAGGGTATGGGAAAGTCGAT 180


5567R-2.IR_full       181 CTACTTTTGCACTAACAACTCGACGAAGACCCGGTCGGAACTTCTCAAGAAAGGCGTCGA 240
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5567R-2.in silico     181 CTACTTTTGCACTAACAACTCGACGAAGACCCGGTCGGAACTTCTCAAGAAAGGCGTCGA 240


5567R-2.IR_full       241 ACTGGGCTTTCATATCAAGGAGAATGGCATTATATCAACGGCCCATGCCACAGCTGCGTA 300
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5567R-2.in silico     241 ACTGGGCTTTCATATCAAGGAGAATGGCATTATATCAACGGCCCATGCCACAGCTGCGTA 300


5567R-2.IR_full       301 <span class="snp"><tt>T</tt></span>CTGAAACGACGGAACTTCAGCAAGCGGGTATTTGTGATCGGAAGCGAGGGAATCACCAA 360
                          <span class="snp"><tt>&nbsp;</tt></span>|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5567R-2.in silico     301 <span class="snp"><tt>C</tt></span>CTGAAACGACGGAACTTCAGCAAGCGGGTATTTGTGATCGGAAGCGAGGGAATCACCAA 360


5567R-2.IR_full       361 GGAACTG<span class="snp"><tt>N</tt></span>GACG<span class="snp"><tt>N</tt></span>CGTGGGCATTCAGCACACTGAGGTGGGCCCGGAACCCATGAAGGGAT 420
                          |||||||<span class="snp"><tt>&nbsp;</tt></span>||||<span class="snp"><tt>&nbsp;</tt></span>|||||||||||||||||||||||||||||||||||||||||||||||
5567R-2.in silico     361 GGAACTG<span class="snp"><tt>-</tt></span>GACG<span class="snp"><tt>C</tt></span>CGTGGGCATTCAGCACACTGAGGTGGGCCCGGAACCCATGAAGGGAT 420


5567R-2.IR_full       421 CGCTGGCCGAGTTCATGGCACAGCATTTAAAACTGGACACGGACATCGGAGCCGTGGTCG 480
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5567R-2.in silico     421 CGCTGGCCGAGTTCATGGCACAGCATTTAAAACTGGACACGGACATCGGAGCCGTGGTCG 480


5567R-2.IR_full       481 TTGGCTTCGACGAACACTTCA 501
                          |||||||||||||||||||||
5567R-2.in silico     481 TTGGCTTCGACGAACACTTCA 501

</PRE>
 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  0  0  0  NM_140758.2  CG5567-RA (CG5567), mRNA 
0   0  4  2  2  NM_080332.2  CG11427-RA (rb), mRNA 
0   0  3  3  6  NM_137042.2  CG6155-RA (Roe1), mRNA 
0   0  2  5  9  NM_143372.1  CG9995-RA (htt), mRNA 
0   0  2  2  2  NM_170220.1  CG31099-RA (CG31099), mRNA 
0   0  1  8  4  NM_001043279.1  CG34131-RA, transcript variant A (CG34131), mRNA 
0   0  1  8  4  NM_142770.2  CG7071-RA, transcript variant A (CG7071), mRNA 
0   0  1  8  4  NM_206543.1  CG7071-RB, transcript variant B (CG7071), mRNA 
0   0  1  5  5  NM_165564.1  CG11205-RB, transcript variant B (phr), mRNA 
0   0  1  5  5  NM_078929.2  CG11205-RA, transcript variant A (phr), mRNA 
0   0  1  5  2  NM_137600.2  CG11218-RA (Obp56d), mRNA 
0   0  1  4  3  NM_137626.2  CG9036-RA (CG9036), mRNA 
0   0  1  4  2  NM_135992.2  CG6840-RA (Rpb11), mRNA 
0   0  1  3  8  NM_057330.2  CG5052-RA (pim), mRNA 
0   0  1  3  3  NM_135093.2  CG14015-RA (CG14015), mRNA 
0   0  1  3  2  NM_136237.2  CG9265-RA (CG9265), mRNA 
0   0  1  2  5  NM_138039.1  CG16786-RA, transcript variant A (CG16786), mRNA 
0   0  1  2  5  NM_166662.1  CG16786-RB, transcript variant B (CG16786), mRNA 
0   0  1  2  4  NM_079741.2  CG10210-RA (tst), mRNA 
0   0  0  6  2  NM_139851.1  CG14834-RA (CG14834), mRNA 
0   0  0  5  16  NM_078670.2  CG7092-RA (Dhc16F), mRNA 
0   0  0  5  6  NM_164933.1  CG7438-RB, transcript variant B (Myo31DF), mRNA 
0   0  0  5  6  NM_078814.2  CG7438-RA, transcript variant A (Myo31DF), mRNA 
0   0  0  5  2  NM_058079.2  CG3159-RA, transcript variant A (Eaat2), mRNA 
0   0  0  5  2  NM_205887.1  CG3159-RB, transcript variant B (Eaat2), mRNA 
0   0  0  4  4  NM_078604.3  CG32592-RA (hiw), mRNA 
0   0  0  4  3  NM_137148.2  CG10202-RA (CG10202), mRNA 
0   0  0  4  2  NM_079000.2  CG3879-RA (Mdr49), mRNA 
0   0  0  4  2  NM_135240.2  CG10158-RA (CG10158), mRNA 
0   0  0  3  12  NM_166125.2  CG18255-RA, transcript variant A (Strn-Mlck), mRNA 
 Pathways (updated: 2024/04/26)
 KEGG Pathway dme00630 : Glyoxylate and dicarboxylate metabolism
dme01100 : Metabolic pathways
dme01200 : Carbon metabolism

SHIGEN - SHared Information of GENetic resources - National Institute of Genetics (NIG)
 Copyright (c) National Institute of Genetics (NIG)
All rights reserved.
The NIG-Fly is a part of the National BioResource Project which started in 2002.