| Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
| Stock ID |
5178R-2 |
| Symbol |
Act88F |
Full Name |
Actin 88F |
| CG No |
CG5178 |
Old CG No |
CG5178 |
| Synonyms |
Actin, actin, E, act88F, CG5178, Act(88F), act 88F, Act88-F, Ifm(3)7, rsd, Act88F |
| Accession No (Link to NCBI) |
NM_079643.1 |
| Inserted Chr. |
lll |
| Insertional Mutation |
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| Phenotype induced by Act5C-GAL4 at 28 degrees |
lethal |
| Map Viewer |
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Reference
[Please submit your publication]
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| Comment |
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| Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
| Primer Seq. 5' |
aaggcctacatggccggaccgCTCCGGTCGTACCACCGGTAT |
| Primer Seq. 3' |
aatctagaggtaccTACCGCCGGACAGCACAGAGT |
| Predicted Fragment Size |
476 |
| IR fragment full Seq |
0001 CTCCgGTCGT ACCACCGGTA TTGTGCTGGA CTCCGGCGAT GGTGTCTCCC ACACCGTGCC
0061 CATCTATGAG GGCTTcgcCC NGCNCCCACG CCATTCTGCG TCTGGATCTG GCTGGTCGCG
0121 ATCTGACCGA TTACCTGATG AAGATCCTGA CGGAGCGCGG CTACAGCNTT CACCACCACC
0181 GCCGAGCGTG AGATCGTGCG CGACATCAAG GAGAAGCTGT GCTACGTGGC TCTGGACTTC
0241 GAGCAGGAGA TGGCCACCGC TGCCGCCTCC ACCTCGCTGG AGAAGTCGTA CGAGTTGCCT
0301 GACGGCCAGG TGATCACCAT TGGCAANCGA GCGCTTCCGC TGCCCCGAGG CTCTGTTCCA
0361 GCCCTCGTTC CTGGGCATGG AGTCGTGCGG CATCCACGAG ACCGTCTACA ACTCGATCAT
0421 GAAGTGCGAC GTGGACATCC GCAAGGATCT GTATGCCAAC TCTGTGCTGT NCGGCGGTA |
| in silico PCR Fragment |
0001 CTCCGGTCGT ACCACCGGTA TTGTGCTGGA CTCCGGCGAT GGTGTCTCCC ACACCGTGCC
0061 CATCTATGAG GGCTTCGCCC TGC-CCCACG CCATTCTGCG TCTGGATCTG GCTGGTCGCG
0121 ATCTGACCGA TTACCTGATG AAGATCCTGA CGGAGCGCGG CTACAGC-TT CACCACCACC
0181 GCCGAGCGTG AGATCGTGCG CGACATCAAG GAGAAGCTGT GCTACGTGGC TCTGGACTTC
0241 GAGCAGGAGA TGGCCACCGC TGCCGCCTCC ACCTCGCTGG AGAAGTCGTA CGAGTTGCCT
0301 GACGGCCAGG TGATCACCAT TGGCAA-CGA GCGCTTCCGC TGCCCCGAGG CTCTGTTCCA
0361 GCCCTCGTTC CTGGGCATGG AGTCGTGCGG CATCCACGAG ACCGTCTACA ACTCGATCAT
0421 GAAGTGCGAC GTGGACATCC GCAAGGATCT GTATGCCAAC TCTGTGCTGT CCGGCGGTA |
| Assemble Data |
<PRE>
5213R-2.IR_full 1 AG<span class="snp"><tt>A</tt></span>AAGGAGTCATCCGT<span class="snp"><tt>C</tt></span>CCCGACGCT<span class="snp"><tt>G</tt></span>TGTTGGGGATACGCCGGGATACGCGGCATGTT 60
||<span class="snp"><tt> </tt></span>||||||||||||||<span class="snp"><tt> </tt></span>|||||||||<span class="snp"><tt> </tt></span>||||||||||||||||||||||||||||||||
5213R-2.in silico 1 AG<span class="snp"><tt>-</tt></span>AAGGAGTCATCCGT<span class="snp"><tt>-</tt></span>CCCGACGCT<span class="snp"><tt>A</tt></span>TGTTGGGGATACGCCGGGATACGCGGCATGTT 60
5213R-2.IR_full 61 CCAA<span class="snp"><tt>N</tt></span>ACTGGAAGACCAGTGGATCCGCCCCCTCCTCTCCCTAATTTGCGGATGAAGACGA 120
||||<span class="snp"><tt> </tt></span>|||||||||||||||||||||||||||||||||||||||||||||||||||||||
5213R-2.in silico 61 CCAA<span class="snp"><tt>-</tt></span>ACTGGAAGACCAGTGGATCCGCCCCCTCCTCTCCCTAATTTGCGGATGAAGACGA 120
5213R-2.IR_full 121 ACCTGATCCTCAACTACCTTCCGCAGGACATGACGGAGTCTGAGCTGCACCGTCTCTTCT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5213R-2.in silico 121 ACCTGATCCTCAACTACCTTCCGCAGGACATGACGGAGTCTGAGCTGCACCGTCTCTTCT 180
5213R-2.IR_full 181 CCAAGTTCGGTGAGATCCGCAAGGCCAAGATCATCCGCCACCGCAGGACTGGCATAAGCT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5213R-2.in silico 181 CCAAGTTCGGTGAGATCCGCAAGGCCAAGATCATCCGCCACCGCAGGACTGGCATAAGCT 240
5213R-2.IR_full 241 GTTGCTACGGATTCGTCGACTACGTGTCGGAACGCCAGGCGGC<span class="snp"><tt>N</tt></span>TGCTGCCGTG<span class="snp"><tt>N</tt></span>AATGG 300
|||||||||||||||||||||||||||||||||||||||||||<span class="snp"><tt> </tt></span>||||||||||<span class="snp"><tt> </tt></span>|||||
5213R-2.in silico 241 GTTGCTACGGATTCGTCGACTACGTGTCGGAACGCCAGGCGGC<span class="snp"><tt>-</tt></span>TGCTGCCGTG<span class="snp"><tt>-</tt></span>AATGG 300
5213R-2.IR_full 301 CATGGATGGCTACGAGACTCGCGGCAAGCGACTGAAAGTGGCCTTCGCCCGACCTTCGGA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5213R-2.in silico 301 CATGGATGGCTACGAGACTCGCGGCAAGCGACTGAAAGTGGCCTTCGCCCGACCTTCGGA 360
5213R-2.IR_full 361 ATATGAAAGCACCAGCTCCAGCCTGTACGTGGGGAACCTGCCCACGTACATGGATGAGAA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5213R-2.in silico 361 ATATGAAAGCACCAGCTCCAGCCTGTACGTGGGGAACCTGCCCACGTACATGGATGAGAA 420
5213R-2.IR_full 421 GAAGGTACGAGAACTCTTCGCCACCTACGGCAACATCGTGGATGTGAA<span class="snp"><tt>N</tt></span>TTGCTGCGCCA 480
||||||||||||||||||||||||||||||||||||||||||||||||<span class="snp"><tt> </tt></span>|||||||||||
5213R-2.in silico 421 GAAGGTACGAGAACTCTTCGCCACCTACGGCAACATCGTGGATGTGAA<span class="snp"><tt>C</tt></span>TTGCTGCGCCA 480
5213R-2.IR_full 481 CAAGTTCAACAATAGGTCCCGTGG<span class="snp"><tt>N</tt></span> 505
||||||||||||||||||||||||<span class="snp"><tt> </tt></span>
5213R-2.in silico 481 CAAGTTCAACAATAGGTCCCGTGG<span class="snp"><tt>C</tt></span> 505
</PRE>
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| Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
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Pathways (updated: 2024/04/26)
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| KEGG Pathway |
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