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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 4624R-3 
 Symbol CG4624  Full Name CG4624 
 CG No CG4624  Old CG No CG4624 
 Synonyms anon-WO0118547.227, CG4624 
 Accession No (Link to NCBI) NM_142871.1 
 Inserted Chr. ll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees viable 
 Map Viewer
 Reference
[Please submit your publication] 		 
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5' 
aaggcctacatggccggaccgATGGCTACCTGGAGGCCCTAA 
 Primer Seq. 3' 
aatctagaggtaccCTCCACGTCGAGGTAACGCAA 
 Predicted Fragment Size 
500 
 IR fragment full Seq 
0001 ATGGCTACCT GGAGGCCCTA ACGCGCGGAT TCAAGAACGG CATGCTAAAG CACTCCGGAC 
0061 TATCTAAATC TGACCCAGTG TGAATCCCTC GAGGACGTAA TGATCAGCAT CCAGGGCACG 
0121 GATTACGGTC TCATCTTTGG TGGCGAACAA TCAGCGCCGT CCGTTGAGGT GATCGAAAGA 
0181 TGCCTTAGGG ATCGTCTGCT GCAGCAATAC TACTACATAC GCAGTCATTC GACGGAGCCG 
0241 CTGACCACCT TTATGGAGTT CATACGATAT CCGTTCATGA TCGATAATGT GGCGCTTCTG 
0301 GTCGCTGGCC TAAACAATCA CCGATCCATG AAGCGTCTGC TAAGAATGTG TCATCCGCTG 
0361 GGCGAATTCG ATCAACTGGG CGCCATCGAA GTGGCCTCGA ATTCTGCGGA GCTCTTCGAC 
0421 GCCGTTCTAA TTGACACGCC CATCGCTCGG TTTGTGCCAC GCGATTTGCC CATGGAGTCG 
0481 TTGCGTTACC TCGACGTGGA G 
 in silico PCR Fragment 
0001 ATGGCTACCT GGAGGCCCTA ACGCGCGGAT TCAAGAACGG CATGCTAAAG CACT-CGGAC 
0061 TATCTAAATC TGACCCAGTG TGAATCCCTC GAGGACGTAA TGATCAGCAT CCAGGGCACG 
0121 GATTACGGTC TCATCTTTGG TGGCGAACAA TCAGCGCCGT CCGTTGAGGT GATCGAAAGA 
0181 TGCCTTAGGG ATCGTCTGCT GCAGCAATAC TACTACATAC GCAGTCATTC GACGGAGCCG 
0241 CTGACCACCT TTATGGAGTT CATACGATAT CCGTTCATGA TCGATAATGT GGCGCTTCTG 
0301 GTCGCTGGCC TAAACAATCA CCGATCCATG AAGCGTCTGC TAAGAATGTG TCATCCGCTG 
0361 GGCGAATTCG ATCAACTGGG CGCCATCGAA GTGGCCTCGA ATTCTGCGGA GCTCTTCGAC 
0421 GCCGTTCTAA TTGACACGCC CATCGCTCGG TTTGTGCCAC GCGATTTGCC CATGGAGTCG 
0481 TTGCGTTACC TCGACGTGGA G 
 Assemble Data 
<PRE>

4624R-3.IR_full       1   ATGGCTACCTGGAGGCCCTAACGCGCGGATTCAAGAACGGCATGCTAAAGCACT<span class="snp"><tt>C</tt></span>CGGAC 60
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||<span class="snp"><tt>&nbsp;</tt></span>|||||
4624R-3.in silico     1   ATGGCTACCTGGAGGCCCTAACGCGCGGATTCAAGAACGGCATGCTAAAGCACT<span class="snp"><tt>-</tt></span>CGGAC 60


4624R-3.IR_full       61  TATCTAAATCTGACCCAGTGTGAATCCCTCGAGGACGTAATGATCAGCATCCAGGGCACG 120
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
4624R-3.in silico     61  TATCTAAATCTGACCCAGTGTGAATCCCTCGAGGACGTAATGATCAGCATCCAGGGCACG 120


4624R-3.IR_full       121 GATTACGGTCTCATCTTTGGTGGCGAACAATCAGCGCCGTCCGTTGAGGTGATCGAAAGA 180
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
4624R-3.in silico     121 GATTACGGTCTCATCTTTGGTGGCGAACAATCAGCGCCGTCCGTTGAGGTGATCGAAAGA 180


4624R-3.IR_full       181 TGCCTTAGGGATCGTCTGCTGCAGCAATACTACTACATACGCAGTCATTCGACGGAGCCG 240
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
4624R-3.in silico     181 TGCCTTAGGGATCGTCTGCTGCAGCAATACTACTACATACGCAGTCATTCGACGGAGCCG 240


4624R-3.IR_full       241 CTGACCACCTTTATGGAGTTCATACGATATCCGTTCATGATCGATAATGTGGCGCTTCTG 300
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
4624R-3.in silico     241 CTGACCACCTTTATGGAGTTCATACGATATCCGTTCATGATCGATAATGTGGCGCTTCTG 300


4624R-3.IR_full       301 GTCGCTGGCCTAAACAATCACCGATCCATGAAGCGTCTGCTAAGAATGTGTCATCCGCTG 360
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
4624R-3.in silico     301 GTCGCTGGCCTAAACAATCACCGATCCATGAAGCGTCTGCTAAGAATGTGTCATCCGCTG 360


4624R-3.IR_full       361 GGCGAATTCGATCAACTGGGCGCCATCGAAGTGGCCTCGAATTCTGCGGAGCTCTTCGAC 420
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
4624R-3.in silico     361 GGCGAATTCGATCAACTGGGCGCCATCGAAGTGGCCTCGAATTCTGCGGAGCTCTTCGAC 420


4624R-3.IR_full       421 GCCGTTCTAATTGACACGCCCATCGCTCGGTTTGTGCCACGCGATTTGCCCATGGAGTCG 480
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
4624R-3.in silico     421 GCCGTTCTAATTGACACGCCCATCGCTCGGTTTGTGCCACGCGATTTGCCCATGGAGTCG 480


4624R-3.IR_full       481 TTGCGTTACCTCGACGTGGAG 501
                          |||||||||||||||||||||
4624R-3.in silico     481 TTGCGTTACCTCGACGTGGAG 501

</PRE>
 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  0  0  0  NM_142871.1  CG4624-RA (CG4624), mRNA 
0   0  2  5  5  NM_169947.1  CG17299-RF, transcript variant F (SNF4Agamma), mRNA 
0   0  2  5  2  NM_080509.2  CG17299-RB, transcript variant B (SNF4Agamma), mRNA 
0   0  2  5  2  NM_169946.1  CG17299-RA, transcript variant A (SNF4Agamma), mRNA 
0   0  2  4  3  NM_135894.2  CG15270-RA, transcript variant A (CG15270), mRNA 
0   0  2  4  3  NM_205997.1  CG15270-RB, transcript variant B (CG15270), mRNA 
0   0  2  4  3  NM_079725.2  CG7050-RA (Nrx-1), mRNA 
0   0  2  2  2  NM_142054.1  CG14365-RA (CG14365), mRNA 
0   0  1  3  3  NM_058103.2  CG3400-RG, transcript variant G (Pfrx), mRNA 
0   0  1  3  3  NM_058104.4  CG3400-RB, transcript variant B (Pfrx), mRNA 
0   0  1  3  3  NM_167656.1  CG3400-RI, transcript variant I (Pfrx), mRNA 
0   0  1  3  3  NM_167651.1  CG3400-RA, transcript variant A (Pfrx), mRNA 
0   0  1  3  3  NM_167654.1  CG3400-RF, transcript variant F (Pfrx), mRNA 
0   0  1  3  3  NM_167652.1  CG3400-RD, transcript variant D (Pfrx), mRNA 
0   0  1  3  3  NM_167655.1  CG3400-RH, transcript variant H (Pfrx), mRNA 
0   0  1  3  3  NM_167653.1  CG3400-RE, transcript variant E (Pfrx), mRNA 
0   0  1  2  5  NM_137785.1  CG9308-RA (CG9308), mRNA 
0   0  1  2  4  NM_169056.1  CG31550-RB, transcript variant B (CG31550), mRNA 
0   0  1  2  3  NM_167408.1  CG32600-RA (dpr8), mRNA 
0   0  1  2  3  NM_078604.3  CG32592-RA (hiw), mRNA 
0   0  1  2  3  NM_144472.2  CG1898-RA (HBS1), mRNA 
0   0  1  2  3  NM_169171.1  CG1070-RD, transcript variant D (Alh), mRNA 
0   0  1  2  3  NM_079526.2  CG1070-RA, transcript variant A (Alh), mRNA 
0   0  1  2  2  NM_169172.1  CG1070-RB, transcript variant B (Alh), mRNA 
0   0  1  2  2  NM_167194.1  CG3001-RB, transcript variant B (Hex-A), mRNA 
0   0  1  2  2  NM_080109.2  CG3001-RA, transcript variant A (Hex-A), mRNA 
0   0  1  2  2  NM_167229.1  CG2096-RA, transcript variant A (flw), mRNA 
0   0  1  2  2  NM_206495.1  CG4898-RK, transcript variant K (Tm1), mRNA 
0   0  0  7  4  NM_144349.2  CG12132-RA (c11.1), mRNA 
 Pathways (updated: 2024/04/26)
 KEGG Pathway dme00190 : Oxidative phosphorylation
dme01100 : Metabolic pathways
dme04142 : Lysosome
dme04145 : Phagosome

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