NIG-Fly - Fly Stocks of National Institute of Genetics -

NIG-RNAi Strains Detail

Request : Click the "Order" button to request for this stock

discarded

Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)

Stock ID 3793R-3

Symbol CG3793 Full Name CG3793

CG No CG3793 Old CG No CG3793

Synonyms BG:DS09217.4, CG3793

Accession No (Link to NCBI) NM_135922.2

Inserted Chr. ll

Insertional Mutation

Phenotype induced by Act5C-GAL4 at 28 degrees lethal

Map Viewer

Reference
[Please submit your publication]

Comment

Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)

Primer Seq. 5'

aaggcctacatggccggaccgCCACGGATCTGCATGGACCAA

Primer Seq. 3'

aatctagaggtaccAGGCGACCACCAGGCAGTAGT

Predicted Fragment Size

IR fragment full Seq

0001 CCACGGATCT GCATGGACCA AGCTACCACC TGATGGGCGT TGACCTGCGC AACCTCGACG 
0061 AGGTGGACAG CAAAGCTGCA GCAGGCAGAA GTTGATTACT CCCTGCCCAC CATATTCCTC 
0121 GCCGAGTGCG TTCTGGTCTA TATCGAGGCG CAAAAACTGC CGTAACCTGC TCAAATGGAT 
0181 TGCGCAAAAG TTCCAAGCAG CCGTCTTTGT CAACTACGAA CAGGTCAACA TGAACGACCG 
0241 TTTCGGCGAT GTGATGCTCA ACAATCTGCG CGGACGTGGC TGCAgCCTGG CCGGCGTTGA 
0301 ATCCTGCTTG TCGCTGGATA CGCAGAGGAA CCGCTTCAAG GACAGCGGCT GGANCTGGCG 
0361 CCCGCGCCTG NGGACATGGT CCAGGTGTAC GAGAGCATCT CGGCGGCCGA GAGGCAGCGA 
0421 AATCGAGCGG CTGGAAATGC TGGACGAGGG TGAACTGCTG CTTCAGCTCT TCCAGCACTA 
0481 CTGCCTGGTG GTCGCCNGNA CTCT

in silico PCR Fragment

0001 CCACGGATCT GCATGGACCA AGCTACCACC TGATGGGCGT TGACCTGCGC AACCTCGACG 
0061 AGGTGGACAG C-AAGCTGCA GCAGGCAGAA GTTGATTACT CCCTGCCCAC CATATTTCTC 
0121 GCCGAGTGCG TTCTGGTCTA TATCGAGGCG C-AAAACTGC CGTAACCTGC TCAAATGGAT 
0181 TGCGCAAAAG TTCCAAGCAG CCGTCTTTGT CAACTACGAA CAGGTCAACA TGAACGACCG 
0241 TTTCGGCGAT GTGATGCTCA ACAATCTGCG CGGACGCGGC TGCAGCCTGG CCGGCGTTGA 
0301 ATCCTGCTTG TCGCTGGATA CGCAGAGGAA CCGCTTCAAG GACAGCGGCT GGA-CTGGCG 
0361 CCCGCGCCTG -GGACATGGT CCAGGTGTAC GAGAGCATCT CGGCGGCCGA GAGGCAGCG- 
0421 AATCGAGCGG CTGGAAATGC TGGACGAGGG TGAACTGCTG CTCCAGCTTT TCCAGCACTA 
0481 CTGCCTGGTG GTCGC----- --CT

Assemble Data


3793R-3.IR_full       1   CCACGGATCTGCATGGACCAAGCTACCACCTGATGGGCGTTGACCTGCGCAACCTCGACG 60
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3793R-3.in silico     1   CCACGGATCTGCATGGACCAAGCTACCACCTGATGGGCGTTGACCTGCGCAACCTCGACG 60


3793R-3.IR_full       61  AGGTGGACAGCAAAGCTGCAGCAGGCAGAAGTTGATTACTCCCTGCCCACCATATTCCTC 120
                          ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
3793R-3.in silico     61  AGGTGGACAGC-AAGCTGCAGCAGGCAGAAGTTGATTACTCCCTGCCCACCATATTTCTC 120


3793R-3.IR_full       121 GCCGAGTGCGTTCTGGTCTATATCGAGGCGCAAAAACTGCCGTAACCTGCTCAAATGGAT 180
                          ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
3793R-3.in silico     121 GCCGAGTGCGTTCTGGTCTATATCGAGGCGC-AAAACTGCCGTAACCTGCTCAAATGGAT 180


3793R-3.IR_full       181 TGCGCAAAAGTTCCAAGCAGCCGTCTTTGTCAACTACGAACAGGTCAACATGAACGACCG 240
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3793R-3.in silico     181 TGCGCAAAAGTTCCAAGCAGCCGTCTTTGTCAACTACGAACAGGTCAACATGAACGACCG 240


3793R-3.IR_full       241 TTTCGGCGATGTGATGCTCAACAATCTGCGCGGACGTGGCTGCAGCCTGGCCGGCGTTGA 300
                          |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
3793R-3.in silico     241 TTTCGGCGATGTGATGCTCAACAATCTGCGCGGACGCGGCTGCAGCCTGGCCGGCGTTGA 300


3793R-3.IR_full       301 ATCCTGCTTGTCGCTGGATACGCAGAGGAACCGCTTCAAGGACAGCGGCTGGANCTGGCG 360
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
3793R-3.in silico     301 ATCCTGCTTGTCGCTGGATACGCAGAGGAACCGCTTCAAGGACAGCGGCTGGA-CTGGCG 360


3793R-3.IR_full       361 CCCGCGCCTGNGGACATGGTCCAGGTGTACGAGAGCATCTCGGCGGCCGAGAGGCAGCGA 420
                          |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| 
3793R-3.in silico     361 CCCGCGCCTG-GGACATGGTCCAGGTGTACGAGAGCATCTCGGCGGCCGAGAGGCAGCG- 420


3793R-3.IR_full       421 AATCGAGCGGCTGGAAATGCTGGACGAGGGTGAACTGCTGCTTCAGCTCTTCCAGCACTA 480
                          |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
3793R-3.in silico     421 AATCGAGCGGCTGGAAATGCTGGACGAGGGTGAACTGCTGCTCCAGCTTTTCCAGCACTA 480


3793R-3.IR_full       481 CTGCCTGGTGGTCGCCNGNACTCT 504
                          |||||||||||||||       ||
3793R-3.in silico     481 CTGCCTGGTGGTCGC-------CT 504

Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)

Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch

cv	0mm	1mm	2mm	3mm	target transcript	off target name
100	474	0	0	8	NM_135922.2	CG3793-RA (CG3793), mRNA
0.63	3	2	2	2	NM_137056.2	CG13340-RA (CG13340), mRNA
0.63	3	2	2	2	NM_140137.2	CG32063-RA, transcript variant A (CG32063), mRNA
0.63	3	2	2	2	NM_168410.1	CG32063-RB, transcript variant B (CG32063), mRNA
0.42	2	3	2	2	NM_079520.3	CG15581-RA (Or83c), mRNA
0	0	2	3	4	NM_079143.2	CG3340-RA (Kr), mRNA
0	0	2	2	4	NM_139954.1	CG7083-RA (CG7083), mRNA
0	0	2	2	3	NM_142296.2	CG14899-RA (CG14899), mRNA
0	0	2	2	2	NM_136608.2	CG8777-RA (CG8777), mRNA
0	0	1	6	10	NM_139732.2	CG10542-RA (CG10542), mRNA
0	0	1	6	5	NM_142674.2	CG10827-RA (CG10827), mRNA
0	0	1	5	2	NM_140463.3	CG9384-RA (CG9384), mRNA
0	0	1	4	2	NM_143302.1	CG14264-RA (CG14264), mRNA
0	0	1	3	7	NM_001042872.1	CG14042-RB, transcript variant B (CG14042), mRNA
0	0	1	3	7	NM_001042871.1	CG14042-RA, transcript variant A (CG14042), mRNA
0	0	1	3	7	NM_144359.2	CG14041-RB, transcript variant B (SP555), mRNA
0	0	1	3	7	NM_164618.1	CG14041-RA, transcript variant A (SP555), mRNA
0	0	1	3	2	NM_170365.1	CG14066-RC, transcript variant C (larp), mRNA
0	0	1	3	2	NM_170366.1	CG14066-RB, transcript variant B (larp), mRNA
0	0	1	3	2	NM_080259.1	CG14066-RA, transcript variant A (larp), mRNA
0	0	1	2	7	NM_132858.2	CG9056-RA (CG9056), mRNA
0	0	1	2	6	NM_140289.2	CG17153-RA (CG17153), mRNA
0	0	1	2	5	NM_142822.1	CG4917-RA, transcript variant A (wfs1), mRNA
0	0	1	2	5	NM_170035.1	CG4917-RB, transcript variant B (wfs1), mRNA
0	0	1	2	4	NM_206513.1	CG14307-RL, transcript variant L (fru), mRNA
0	0	1	2	3	NM_079827.2	CG7788-RA (Ice), mRNA
0	0	1	2	3	NM_057843.2	CG14029-RA, transcript variant A (vri), mRNA
0	0	1	2	3	NM_164639.1	CG14029-RC, transcript variant C (vri), mRNA
0	0	1	2	3	NM_166563.1	CG30274-RA (CG30274), mRNA
0	0	0	6	3	NM_143452.1	CG1911-RA (CAP-D2), mRNA

Back