|
Notice:
|
|
Suspension of shipments during Golden Week Holidays: From 29 April to 13 May, deadline 16 April.
|
|
| NIG-RNAi Strains Detail |
| Request : Click the "Order" button to request for this stock |
|
| Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
| Stock ID |
3758R-1 |
| Symbol |
esg |
Full Name |
escargot |
| CG No |
CG3758 |
Old CG No |
CG3758 |
| Synonyms |
CG3758, BG:DS07851.7, l(2)35Ce, l(2)br43, wiz, l(2)esg, l35Ce, dgl, 4B7, br43, shof, l(2)4B7, l(2)07082, flg, esg |
| Accession No (Link to NCBI) |
NM_057252.3 |
| Inserted Chr. |
lll |
| Insertional Mutation |
|
| Phenotype induced by Act5C-GAL4 at 28 degrees |
lethal |
| Map Viewer |
|
Reference
[Please submit your publication]
|
Wu C, Li Z, Ding X, Guo X, Sun Y, Wang X, Hu Y, Li T, La X, Li J, Li JA, Li W, Xue L.<br> Snail modulates JNK-mediated cell death in Drosophila.<br> Cell Death Dis (2019) 10(12) 893
[
PubMed ID = 31772150
]
[
RRC reference
]
Cho Y, Lai CM, Lin KY, Hsu HJ.<br> A Targeted <i>RNAi</i> Screen Reveals <i>Drosophila</i> Female-Sterile Genes That Control the Size of Germline Stem Cell Niche During Development.<br> G3 (Bethesda) (2018) 8(7) 2345-2354
[
PubMed ID = 29764959
]
[
RRC reference
]
Yano H, Yamamoto-Hino M, Awano W, Aoki-Kinoshita KF, Tsuda-Sakurai K, Okano H, Goto S.<br> Identification of proteasome components required for apical localization of Chaoptin using functional genomics.<br> J Neurogenet (2012) 26(1) 53-63
[
PubMed ID = 22417167
]
[
RRC reference
]
|
| Comment |
|
| Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
| Primer Seq. 5' |
aaggcctacatggccggaccgGGAAAATCCCTCCGAGGAACT |
| Primer Seq. 3' |
aatctagaggtaccTCGGATAACCGGGCATCTGTG |
| Predicted Fragment Size |
500 |
| IR fragment full Seq |
0001 GGAAAATCCC TCCGAGGAAC TGATCAACGT CAGCGATTGT TGCGAGGACG AGGGTGTGGA
0061 TGTAGATCAT ACAGATGATG AACACATCGA GGAGGAGGAC GAGGACGTCG ATGTGGATGT
0121 GGACTCGGAC CCAAATCAGA CCCAGGCTGC GGCTTTANNT GCTGCCGCAG CTGTGGCCGC
0181 TGCTGCAGCC GCCTCCGTGG TTGTGCCCAC GCCCACATAC CCGAAATATC CATGGAACAA
0241 CTTCCACATG TCGCCCTACA CCGCCGAGTT CTACAGGACC ATCAATCAGC CGGGTCATCA
0301 GATTTTGCCG CTGCGTGGCG ATCTCATTGC GCCCAGTTCG CCGAGTGACT TCGCTGGGCT
0361 CCCTGTCGCC GCCACCACAT CATTACCTTC ATGGTCGCGC AAGCTCCGTT TCCCCGCCCA
0421 TGAGATCGGA AATCATCCAT AGACCAATCG GCGTGCGGCA GCACCGNTTT TCCTGCCCTA
0481 TCCACAGATG CCCGGTTATC CGNGTA |
| in silico PCR Fragment |
0001 GGAAAATCCC TCCGAGGAAC TGATCAACGT CAGCGATTGT TGCGAGGACG AGGGTGTGGA
0061 TGTAGATCAT ACAGATGATG AACACATCGA GGAGGAGGAC GAGGACGTCG ATGTGGATGT
0121 GGACTCGGAC CCAAATCAGA CCCAGGCTGC GGCTTTAGCT GCTGCCGCAG CTGTGGCCGC
0181 CGCTGCAGCC GCCTCCGTGG TTGTGCCCAC GCCCACATAC CCGAAATATC CCTGGAACAA
0241 CTTCCACATG TCGCCCTACA CCGCCGAGTT CTACAGGACC ATCAATCAGC AGGGTCATCA
0301 GATTTTGCCG CTGCGTGGCG ATCTCATTGC GCCCAGTTCG CCGAGTGAC- TCGCTGGGCT
0361 CCCTGTCGCC GCCACCACAT CATTACCTTC ATGGTCGCGC AAGCTCCGTT TCCCCGCCCA
0421 TGAGATCTGA AATCATCCAT AGACCAATCG GCGTGCGGCA GCACCG--TT TCCTGCCCTA
0481 TCCACAGATG CCCGGTTATC CG---A |
| Assemble Data |
<PRE>
3758R-1.IR_full 1 GGAAAATCCCTCCGAGGAACTGATCAACGTCAGCGATTGTTGCGAGGACGAGGGTGTGGA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3758R-1.in silico 1 GGAAAATCCCTCCGAGGAACTGATCAACGTCAGCGATTGTTGCGAGGACGAGGGTGTGGA 60
3758R-1.IR_full 61 TGTAGATCATACAGATGATGAACACATCGAGGAGGAGGACGAGGACGTCGATGTGGATGT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3758R-1.in silico 61 TGTAGATCATACAGATGATGAACACATCGAGGAGGAGGACGAGGACGTCGATGTGGATGT 120
3758R-1.IR_full 121 GGACTCGGACCCAAATCAGACCCAGGCTGCGGCTTTA<span class="snp"><tt>N</tt></span><span class="snp"><tt>N</tt></span>TGCTGCCGCAGCTGTGGCCGC 180
|||||||||||||||||||||||||||||||||||||<span class="snp"><tt> </tt></span><span class="snp"><tt> </tt></span>|||||||||||||||||||||
3758R-1.in silico 121 GGACTCGGACCCAAATCAGACCCAGGCTGCGGCTTTA<span class="snp"><tt>G</tt></span><span class="snp"><tt>C</tt></span>TGCTGCCGCAGCTGTGGCCGC 180
3758R-1.IR_full 181 <span class="snp"><tt>T</tt></span>GCTGCAGCCGCCTCCGTGGTTGTGCCCACGCCCACATACCCGAAATATCC<span class="snp"><tt>A</tt></span>TGGAACAA 240
<span class="snp"><tt> </tt></span>||||||||||||||||||||||||||||||||||||||||||||||||||<span class="snp"><tt> </tt></span>||||||||
3758R-1.in silico 181 <span class="snp"><tt>C</tt></span>GCTGCAGCCGCCTCCGTGGTTGTGCCCACGCCCACATACCCGAAATATCC<span class="snp"><tt>C</tt></span>TGGAACAA 240
3758R-1.IR_full 241 CTTCCACATGTCGCCCTACACCGCCGAGTTCTACAGGACCATCAATCAGC<span class="snp"><tt>C</tt></span>GGGTCATCA 300
||||||||||||||||||||||||||||||||||||||||||||||||||<span class="snp"><tt> </tt></span>|||||||||
3758R-1.in silico 241 CTTCCACATGTCGCCCTACACCGCCGAGTTCTACAGGACCATCAATCAGC<span class="snp"><tt>A</tt></span>GGGTCATCA 300
3758R-1.IR_full 301 GATTTTGCCGCTGCGTGGCGATCTCATTGCGCCCAGTTCGCCGAGTGAC<span class="snp"><tt>T</tt></span>TCGCTGGGCT 360
|||||||||||||||||||||||||||||||||||||||||||||||||<span class="snp"><tt> </tt></span>||||||||||
3758R-1.in silico 301 GATTTTGCCGCTGCGTGGCGATCTCATTGCGCCCAGTTCGCCGAGTGAC<span class="snp"><tt>-</tt></span>TCGCTGGGCT 360
3758R-1.IR_full 361 CCCTGTCGCCGCCACCACATCATTACCTTCATGGTCGCGCAAGCTCCGTTTCCCCGCCCA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3758R-1.in silico 361 CCCTGTCGCCGCCACCACATCATTACCTTCATGGTCGCGCAAGCTCCGTTTCCCCGCCCA 420
3758R-1.IR_full 421 TGAGATC<span class="snp"><tt>G</tt></span>GAAATCATCCATAGACCAATCGGCGTGCGGCAGCACCG<span class="snp"><tt>N</tt></span><span class="snp"><tt>T</tt></span>TTTCCTGCCCTA 480
|||||||<span class="snp"><tt> </tt></span>||||||||||||||||||||||||||||||||||||||<span class="snp"><tt> </tt></span><span class="snp"><tt> </tt></span>||||||||||||
3758R-1.in silico 421 TGAGATC<span class="snp"><tt>T</tt></span>GAAATCATCCATAGACCAATCGGCGTGCGGCAGCACCG<span class="snp"><tt>-</tt></span><span class="snp"><tt>-</tt></span>TTTCCTGCCCTA 480
3758R-1.IR_full 481 TCCACAGATGCCCGGTTATCCG<span class="snp"><tt>N</tt></span><span class="snp"><tt>G</tt></span><span class="snp"><tt>T</tt></span>A 506
||||||||||||||||||||||<span class="snp"><tt> </tt></span><span class="snp"><tt> </tt></span><span class="snp"><tt> </tt></span>|
3758R-1.in silico 481 TCCACAGATGCCCGGTTATCCG<span class="snp"><tt>-</tt></span><span class="snp"><tt>-</tt></span><span class="snp"><tt>-</tt></span>A 506
</PRE>
|
| Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
|
| cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
| 100 |
482 |
0 |
0 |
10 |
NM_057252.3 |
CG3758-RA (esg), mRNA |
| 0.41 |
2 |
4 |
5 |
3 |
NM_139707.1 |
CG15214-RA (CG15214), mRNA |
| 0.41 |
2 |
2 |
4 |
10 |
NM_139802.2 |
CG32392-RB, transcript variant B (CG32392), mRNA |
| 0.2 |
1 |
5 |
2 |
3 |
NM_134738.2 |
CG4887-RA (CG4887), mRNA |
| 0.2 |
1 |
2 |
7 |
12 |
NM_078859.2 |
CG5813-RA, transcript variant A (chif), mRNA |
| 0.2 |
1 |
2 |
7 |
12 |
NM_165156.1 |
CG5813-RB, transcript variant B (chif), mRNA |
| 0.2 |
1 |
2 |
5 |
12 |
NM_142899.1 |
CG10152-RA (beat-IV), mRNA |
| 0.2 |
1 |
2 |
4 |
4 |
NM_132084.2 |
CG12219-RA (CG12219), mRNA |
| 0.2 |
1 |
2 |
3 |
14 |
NM_134962.2 |
CG31772-RA (CG31772), mRNA |
| 0.2 |
1 |
2 |
3 |
4 |
NM_139363.1 |
CG7852-RA, transcript variant A (CG7852), mRNA |
| 0.2 |
1 |
2 |
3 |
4 |
NM_206232.1 |
CG7852-RC, transcript variant C (CG7852), mRNA |
| 0.2 |
1 |
2 |
3 |
4 |
NM_167890.1 |
CG7852-RB, transcript variant B (CG7852), mRNA |
| 0.2 |
1 |
2 |
2 |
2 |
NM_135870.3 |
CG4218-RA (CG4218), mRNA |
| 0 |
0 |
23 |
149 |
189 |
NM_078751.3 |
CG3047-RA (Sgs1), mRNA |
| 0 |
0 |
8 |
20 |
83 |
NM_132412.1 |
CG9817-RA (CG9817), mRNA |
| 0 |
0 |
7 |
22 |
83 |
NM_080025.1 |
CG11387-RA, transcript variant A (ct), mRNA |
| 0 |
0 |
7 |
15 |
13 |
NM_206564.1 |
CG5794-RE, transcript variant E (CG5794), mRNA |
| 0 |
0 |
7 |
15 |
13 |
NM_143018.2 |
CG5794-RD, transcript variant D (CG5794), mRNA |
| 0 |
0 |
7 |
15 |
13 |
NM_170158.1 |
CG5794-RB, transcript variant B (CG5794), mRNA |
| 0 |
0 |
7 |
6 |
17 |
NM_165667.1 |
CG2040-RA, transcript variant A (hig), mRNA |
| 0 |
0 |
7 |
6 |
17 |
NM_165666.1 |
CG2040-RB, transcript variant B (hig), mRNA |
| 0 |
0 |
7 |
6 |
17 |
NM_001014514.1 |
CG2040-RD, transcript variant D (hig), mRNA |
| 0 |
0 |
7 |
6 |
17 |
NM_080371.2 |
CG2040-RC, transcript variant C (hig), mRNA |
| 0 |
0 |
6 |
13 |
12 |
NM_135112.1 |
CG11030-RA (CG11030), mRNA |
| 0 |
0 |
5 |
6 |
12 |
NM_057645.2 |
CG10844-RC, transcript variant C (Rya-r44F), mRNA |
| 0 |
0 |
5 |
6 |
12 |
NM_057644.2 |
CG10844-RB, transcript variant B (Rya-r44F), mRNA |
| 0 |
0 |
5 |
6 |
12 |
NM_057643.2 |
CG10844-RA, transcript variant A (Rya-r44F), mRNA |
| 0 |
0 |
5 |
6 |
12 |
NM_057646.2 |
CG10844-RD, transcript variant D (Rya-r44F), mRNA |
| 0 |
0 |
4 |
18 |
59 |
NM_167685.1 |
CG12701-RB, transcript variant B (CG12701), mRNA |
| 0 |
0 |
4 |
18 |
59 |
NM_134512.4 |
CG12701-RA, transcript variant A (CG12701), mRNA |
|
|
Pathways (updated: 2024/04/26)
|
| KEGG Pathway |
|
|
|
