|
|
| NIG-RNAi Strains Detail |
| Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
| Stock ID |
31237R-2 |
| Symbol |
Rpb4 |
Full Name |
Rpb4 |
| CG No |
CG33520 |
Old CG No |
CG31237 |
| Synonyms |
Ada2a/Rpb4, RPB4, CG7150, Ada2a, dRpb4, dAda2a, ADA2A, dAda2A, ADA2a, CG31237, CG31318, CG33520, Ada2A, anon-WO0118547.402, Rpb4 |
| Accession No (Link to NCBI) |
NM_001014635.1 |
| Inserted Chr. |
ll |
| Insertional Mutation |
|
| Phenotype induced by Act5C-GAL4 at 28 degrees |
lethal |
| Map Viewer |
|
Reference
[Please submit your publication]
|
Park J, Lee J, Kim JH, Lee J, Park H, Lim C.<br> ZNF598 co-translationally titrates poly(GR) protein implicated in the pathogenesis of C9ORF72-associated ALS/FTD.<br> Nucleic Acids Res (2021) 49(19) 11294-11311
[
PubMed ID = 34551427
]
[
RRC reference
]
Nitta Y, Yamazaki D, Sugie A, Hiroi M, Tabata T.<br> DISCO Interacting Protein 2 regulates axonal bifurcation and guidance of Drosophila mushroom body neurons.<br> Dev Biol (2017) 421(2) 233-244
[
PubMed ID = 27908785
]
[
RRC reference
]
Ma Y, Chen Z, Jin Y, Liu W.<br> Identification of a histone acetyltransferase as a novel regulator of Drosophila intestinal stem cells.<br> FEBS Lett (2013) 587(10) 1489-95
[
PubMed ID = 23535028
]
[
RRC reference
]
|
| Comment |
|
| Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
| Primer Seq. 5' |
aaggcctacatggccggaccgTCAGAGTTCGAAAATGCCGAG |
| Primer Seq. 3' |
aatctagaggtaccAAGCTGCGTTTAGTGCCGATA |
| Predicted Fragment Size |
350 |
| IR fragment full Seq |
0001 TCAGAGTTCG AAAATGCCGA GACGCTGCTG ATATCGGAGG TGCACATGCT TCTCGATCAC
0061 CGAAAGCGAC AAAACGAATC CGCCGACGAG GAGCAAGAGT TCTCCGAGGT CTTCATGAAG
0121 ACGTACGCCT ACACGGATAG TTTTCGAAAG TTCAAAAACA AGGAGACCAT AATGTCTGCG
0181 CGAAGCTTGC TGATGCAGAA AAAGCTGCAC AAATTCGAAC TGGCGGCACT GGGTAATTTG
0241 TGTCCGGAGG CGCCCGAGGA gGNCAAGGCG CTGATTCCTT CACTAGAGGG TCGCTTCGAG
0301 GATGAgGNGN TGCGCCAAAT ACTCGACGAT ATCGGCACTA AACGCAGCTT |
| in silico PCR Fragment |
0001 TCAGAGTTCG AAAATGCCGA GACGCTGCTG ATATCGGAGG TGCACATGCT TCTCGATCAC
0061 CGAAAGCGAC AAAACGAATC CGCCGACGAG GAGCAAGAGT TCTCCGAGGT CTTCATGAAG
0121 ACGTACGCCT ACACGGATAG TTTTCGAAAG TTCAAAAACA AGGAGACCAT AATGTCTGCG
0181 CGAAGCTTGC TGATGCAGAA AAAGCTGCAC AAATTCGAAC TGGCGGCACT GGGTAATTTG
0241 TGTCCGGAGG CGCCCGAGGA GGCCAAGGCG CTGATTCCTT CACTAGAGGG TCGCTTCGAG
0301 GATGAGGAGC TGCGCCAAAT ACTCGACGAT ATCGGCACTA AACGCAGCTT |
| Assemble Data |
<PRE>
31237R-2.IR_full 1 TCAGAGTTCGAAAATGCCGAGACGCTGCTGATATCGGAGGTGCACATGCTTCTCGATCAC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
31237R-2.in silico 1 TCAGAGTTCGAAAATGCCGAGACGCTGCTGATATCGGAGGTGCACATGCTTCTCGATCAC 60
31237R-2.IR_full 61 CGAAAGCGACAAAACGAATCCGCCGACGAGGAGCAAGAGTTCTCCGAGGTCTTCATGAAG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
31237R-2.in silico 61 CGAAAGCGACAAAACGAATCCGCCGACGAGGAGCAAGAGTTCTCCGAGGTCTTCATGAAG 120
31237R-2.IR_full 121 ACGTACGCCTACACGGATAGTTTTCGAAAGTTCAAAAACAAGGAGACCATAATGTCTGCG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
31237R-2.in silico 121 ACGTACGCCTACACGGATAGTTTTCGAAAGTTCAAAAACAAGGAGACCATAATGTCTGCG 180
31237R-2.IR_full 181 CGAAGCTTGCTGATGCAGAAAAAGCTGCACAAATTCGAACTGGCGGCACTGGGTAATTTG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
31237R-2.in silico 181 CGAAGCTTGCTGATGCAGAAAAAGCTGCACAAATTCGAACTGGCGGCACTGGGTAATTTG 240
31237R-2.IR_full 241 TGTCCGGAGGCGCCCGAGGAGG<span class="snp"><tt>N</tt></span>CAAGGCGCTGATTCCTTCACTAGAGGGTCGCTTCGAG 300
||||||||||||||||||||||<span class="snp"><tt> </tt></span>|||||||||||||||||||||||||||||||||||||
31237R-2.in silico 241 TGTCCGGAGGCGCCCGAGGAGG<span class="snp"><tt>C</tt></span>CAAGGCGCTGATTCCTTCACTAGAGGGTCGCTTCGAG 300
31237R-2.IR_full 301 GATGAGG<span class="snp"><tt>N</tt></span>G<span class="snp"><tt>N</tt></span>TGCGCCAAATACTCGACGATATCGGCACTAAACGCAGCTT 350
|||||||<span class="snp"><tt> </tt></span>|<span class="snp"><tt> </tt></span>||||||||||||||||||||||||||||||||||||||||
31237R-2.in silico 301 GATGAGG<span class="snp"><tt>A</tt></span>G<span class="snp"><tt>C</tt></span>TGCGCCAAATACTCGACGATATCGGCACTAAACGCAGCTT 350
</PRE>
|
| Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
|
| cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
| 100 |
332 |
0 |
0 |
4 |
NM_001014633.1 |
CG33520-RD, transcript variant D (Rpb4), mRNA |
| 100 |
332 |
0 |
0 |
4 |
NM_001014636.1 |
CG33520-RB, transcript variant B (Rpb4), mRNA |
| 100 |
332 |
0 |
0 |
4 |
NM_001014634.1 |
CG33520-RE, transcript variant E (Rpb4), mRNA |
| 100 |
332 |
0 |
0 |
4 |
NM_001014635.1 |
CG33520-RA, transcript variant A (Rpb4), mRNA |
| 100 |
332 |
0 |
0 |
4 |
NM_001014637.1 |
CG33520-RC, transcript variant C (Rpb4), mRNA |
| 0 |
0 |
5 |
2 |
5 |
NM_141115.1 |
CG14562-RA (CG14562), mRNA |
| 0 |
0 |
3 |
3 |
3 |
NM_141811.2 |
CG5252-RA (Ranbp9), mRNA |
| 0 |
0 |
3 |
2 |
2 |
NM_134481.1 |
CG14220-RA (CG14220), mRNA |
| 0 |
0 |
2 |
4 |
3 |
NM_164436.1 |
CG17646-RB, transcript variant B (CG17646), mRNA |
| 0 |
0 |
2 |
4 |
3 |
NM_134774.2 |
CG17646-RA, transcript variant A (CG17646), mRNA |
| 0 |
0 |
2 |
3 |
9 |
NM_169497.1 |
CG8476-RA (CG8476), mRNA |
| 0 |
0 |
2 |
3 |
4 |
NM_143028.1 |
CG13634-RA (CG13634), mRNA |
| 0 |
0 |
2 |
2 |
5 |
NM_169701.2 |
CG31045-RB, transcript variant B (Mhcl), mRNA |
| 0 |
0 |
2 |
2 |
5 |
NM_001043250.1 |
CG31045-RG, transcript variant G (Mhcl), mRNA |
| 0 |
0 |
2 |
2 |
5 |
NM_169700.2 |
CG31045-RA, transcript variant A (Mhcl), mRNA |
| 0 |
0 |
1 |
5 |
7 |
NM_141397.2 |
CG1021-RB, transcript variant B (CG1021), mRNA |
| 0 |
0 |
1 |
5 |
7 |
NM_169141.1 |
CG1021-RA, transcript variant A (CG1021), mRNA |
| 0 |
0 |
1 |
3 |
9 |
NM_078869.4 |
CG15154-RB, transcript variant B (Socs36E), mRNA |
| 0 |
0 |
1 |
3 |
9 |
NM_165243.1 |
CG15154-RA, transcript variant A (Socs36E), mRNA |
| 0 |
0 |
1 |
3 |
5 |
NM_141430.2 |
CG1988-RA, transcript variant A (CG1988), mRNA |
| 0 |
0 |
1 |
3 |
5 |
NM_176414.1 |
CG1988-RB, transcript variant B (CG1988), mRNA |
| 0 |
0 |
1 |
3 |
3 |
NM_142377.1 |
CG18139-RA (CG18139), mRNA |
| 0 |
0 |
1 |
3 |
2 |
NM_143421.2 |
CG11897-RB, transcript variant B (CG11897), mRNA |
| 0 |
0 |
1 |
2 |
3 |
NM_079714.2 |
CG6706-RB, transcript variant B (GABA-B-R2), mRNA |
| 0 |
0 |
1 |
2 |
3 |
NM_169968.1 |
CG6706-RA, transcript variant A (GABA-B-R2), mRNA |
| 0 |
0 |
1 |
2 |
2 |
NM_176556.1 |
CG33106-RA, transcript variant A (mask), mRNA |
| 0 |
0 |
1 |
2 |
2 |
NM_176557.1 |
CG33106-RB, transcript variant B (mask), mRNA |
| 0 |
0 |
1 |
2 |
2 |
NM_144365.2 |
CG17200-RA (Ugt86Dg), mRNA |
| 0 |
0 |
1 |
2 |
2 |
NM_137740.2 |
CG9841-RA (EfSec), mRNA |
| 0 |
0 |
0 |
5 |
9 |
NM_079576.1 |
CG12809-RA (nerfin-2), mRNA |
|
|
Pathways (updated: 2024/04/26)
|
| KEGG Pathway |
|
|
|
