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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 31101R-1 
 Symbol CG31101  Full Name CG31101 
 CG No CG31101  Old CG No CG31101 
 Synonyms CG31101 
 Accession No (Link to NCBI) NM_170530.1 
 Inserted Chr. lll 
 Insertional Mutation  semi-lethal 
 Phenotype induced by Act5C-GAL4 at 28 degrees viable 
 Map Viewer
 Reference
[Please submit your publication]
 
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgATGAGCGATCGTAGAATCGAG 
 Primer Seq. 3'
aatctagaggtaccCTTGGTGTGGTAGTAGTATGG 
 Predicted Fragment Size
363 
 IR fragment full Seq
0001 ATGAGCGATC GTAGAATCGA GCGGCTTTAT CCCAGTGCCA ACCTTCTTGC AAAAAGCTAT 
0061 CCAAGGCTGT CTGGTGGCTA TGTCTGGGCG GAACTCAACC TCCGATCCAA TCCTATAACT 
0121 TTCAATAGAC TTCAAAAAGG GTTGACAAGT AAACGCCCCT CTTTGCCGAC TGAATATGAT 
0181 GAGATCTTTC AGCTTTTGAA GTTTGCCATT CAGGCACAAG GGCGAGATAC AAAAGCGCTT 
0241 GGTAAGAAAT TATGCGAATC AATAGGTTGG GTAAGACGAA GATATACTGC TCTTACCAAT 
0301 TCAATTTCTG ATATTCGAAA ATCAAAATTT ATGGTGTGTG TGCCATACTA CTACCACACC 
0361 AAG 
 in silico PCR Fragment
0001 ATGAGCGATC GTAGAATCGA GCGGCTTTAT CCCAGTGCCA GCCTTCTTGC AAAAAGCTAT 
0061 CCAAGGCTGT CTGGTGGCTA TGTCTGGGCG GAACTCAACC TCCGATCCAA TCCTATAACT 
0121 TTCAATAGAC TTCAAAAAGG GTTGACAAGT AAACGCCCCT CTTTGCCGAC TGAATATGAT 
0181 GAGATCTTTC AGCTTTTGAA GTTTGCCATT CAGGCACAAG GGCGAGATAC AAAAGCGCTT 
0241 GGTAAGAAAT TATGCGAATC AATAGGTTGG GTAAGACGAA GATATACTGC TCTTACCAAT 
0301 TCAATTTCTG ATATTCGAAA ATCAAAATTT ATGGTGTGTG TGCCATACTA CTACCACACC 
0361 AAG 
 Assemble Data
<PRE>

31101R-1.IR_full       1   ATGAGCGATCGTAGAATCGAGCGGCTTTATCCCAGTGCCA<span class="snp"><tt>A</tt></span>CCTTCTTGCAAAAAGCTAT 60
                           ||||||||||||||||||||||||||||||||||||||||<span class="snp"><tt>&nbsp;</tt></span>|||||||||||||||||||
31101R-1.in silico     1   ATGAGCGATCGTAGAATCGAGCGGCTTTATCCCAGTGCCA<span class="snp"><tt>G</tt></span>CCTTCTTGCAAAAAGCTAT 60


31101R-1.IR_full       61  CCAAGGCTGTCTGGTGGCTATGTCTGGGCGGAACTCAACCTCCGATCCAATCCTATAACT 120
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
31101R-1.in silico     61  CCAAGGCTGTCTGGTGGCTATGTCTGGGCGGAACTCAACCTCCGATCCAATCCTATAACT 120


31101R-1.IR_full       121 TTCAATAGACTTCAAAAAGGGTTGACAAGTAAACGCCCCTCTTTGCCGACTGAATATGAT 180
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
31101R-1.in silico     121 TTCAATAGACTTCAAAAAGGGTTGACAAGTAAACGCCCCTCTTTGCCGACTGAATATGAT 180


31101R-1.IR_full       181 GAGATCTTTCAGCTTTTGAAGTTTGCCATTCAGGCACAAGGGCGAGATACAAAAGCGCTT 240
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
31101R-1.in silico     181 GAGATCTTTCAGCTTTTGAAGTTTGCCATTCAGGCACAAGGGCGAGATACAAAAGCGCTT 240


31101R-1.IR_full       241 GGTAAGAAATTATGCGAATCAATAGGTTGGGTAAGACGAAGATATACTGCTCTTACCAAT 300
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
31101R-1.in silico     241 GGTAAGAAATTATGCGAATCAATAGGTTGGGTAAGACGAAGATATACTGCTCTTACCAAT 300


31101R-1.IR_full       301 TCAATTTCTGATATTCGAAAATCAAAATTTATGGTGTGTGTGCCATACTACTACCACACC 360
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
31101R-1.in silico     301 TCAATTTCTGATATTCGAAAATCAAAATTTATGGTGTGTGTGCCATACTACTACCACACC 360


31101R-1.IR_full       361 AAG 363
                           |||
31101R-1.in silico     361 AAG 363

</PRE>
 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
 
 Pathways (updated: 2024/04/26)
 KEGG Pathway

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