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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 30383R-2 
 Symbol CG30383  Full Name CG30383 
 CG No CG30383  Old CG No CG30383 
 Synonyms CG30383 
 Accession No (Link to NCBI) NM_165563.2 
 Inserted Chr. ll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees viable 
 Map Viewer
 Reference
[Please submit your publication] 		 
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5' 
aaggcctacatggccggaccgGCTCGATCTACGCTTTTGCAC 
 Primer Seq. 3' 
aatctagaggtaccAACAGTACCGAGAACAGAACG 
 Predicted Fragment Size 
500 
 IR fragment full Seq 
0001 GCTCGATCTA CGCTTTTGCA CGATGCTGAA CAATCGATCC ACAGGGAGTT GATCGACTAC 
0061 GCTGTTGCGT CGTGCCGTCT GTTTTACATC CAGGATGCTT CAGCCTGGAA GGAGTGGAAC 
0121 ACCAGGAACG AGGCTTTCAG GGATCTCACT GCCAAGGAAG TGTGCCATTT ATTCCTAACC 
0181 GAAGTTCTGC CCCAACTGGA CACCTATCAG CTTTCGGAGA TGGCCCAAAA ACGCCTTAAG 
0241 CTTCTGGATC TGCATCCATT CTTCAGGCGC GTTGcCCAAG GCTACCAGTA CACTCCGGAT 
0301 TGTGACCTTG CAGCTCGATT TGTAGTCCAG CGCCAGAAAC ATTTTATCCA ACCTGAAGAT 
0361 ATCAAGAAGA TTAAGAAAGG CGATTCCCTG AAAAGATGCC AAACCGTGCT CATGGAAAGC 
0421 GATGAAATGG AGCAGAAAAC CTGCGTTGGG TATCGAAGCA AAGTCTCCAT GGAGTCCGCC 
0481 GTTCTGTTNC TCGGTACTGT T 
 in silico PCR Fragment 
0001 GCTCGATCTA CGCTTTTGCA CGATGCTGAA CAATCGATCC ACAGGGAGTT GATCGACTAC 
0061 GCTGTTGCGT CGTGCCGTCT GTTTTACATC CAGGATGCTT CAGCCTGGAA GGAGTGGAAC 
0121 ACCAGGAACG AGGCTTTCAG GGATCTCACT GCCAAGGAAG TGTGCCATTT ATTCCTAACC 
0181 GAAGTTCTGC CCCAACTGGA CACCTATCAG CTTTCGGAGA TGGCCCAAAA ACGCCTTAAG 
0241 CTTCTGGATC TGCATCCATT CTTCAGGCGC GTTGCCCAAG GCTACCAGTA CACTCCGGAT 
0301 TGTGACCTTG CAGCTCGATT TGTAGTCCAG CGCCAGAAAC ATTTTATCCA ACCTGAAGAT 
0361 ATCAAGAAGA TTAAGAAAGG CGATTCCCTG AAAAGATGCC AAACCGTGCT CATGGAAAGC 
0421 GATGAAATGG AGCAGAAAAC CTGCGTTGGG TATCGAAGCA AAGTCTCCAT GGAGTCCGCC 
0481 GTTCTGTT-C TCGGTACTGT T 
 Assemble Data 
<PRE>

30383R-2.IR_full       1   GCTCGATCTACGCTTTTGCACGATGCTGAACAATCGATCCACAGGGAGTTGATCGACTAC 60
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
30383R-2.in silico     1   GCTCGATCTACGCTTTTGCACGATGCTGAACAATCGATCCACAGGGAGTTGATCGACTAC 60


30383R-2.IR_full       61  GCTGTTGCGTCGTGCCGTCTGTTTTACATCCAGGATGCTTCAGCCTGGAAGGAGTGGAAC 120
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
30383R-2.in silico     61  GCTGTTGCGTCGTGCCGTCTGTTTTACATCCAGGATGCTTCAGCCTGGAAGGAGTGGAAC 120


30383R-2.IR_full       121 ACCAGGAACGAGGCTTTCAGGGATCTCACTGCCAAGGAAGTGTGCCATTTATTCCTAACC 180
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
30383R-2.in silico     121 ACCAGGAACGAGGCTTTCAGGGATCTCACTGCCAAGGAAGTGTGCCATTTATTCCTAACC 180


30383R-2.IR_full       181 GAAGTTCTGCCCCAACTGGACACCTATCAGCTTTCGGAGATGGCCCAAAAACGCCTTAAG 240
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
30383R-2.in silico     181 GAAGTTCTGCCCCAACTGGACACCTATCAGCTTTCGGAGATGGCCCAAAAACGCCTTAAG 240


30383R-2.IR_full       241 CTTCTGGATCTGCATCCATTCTTCAGGCGCGTTGCCCAAGGCTACCAGTACACTCCGGAT 300
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
30383R-2.in silico     241 CTTCTGGATCTGCATCCATTCTTCAGGCGCGTTGCCCAAGGCTACCAGTACACTCCGGAT 300


30383R-2.IR_full       301 TGTGACCTTGCAGCTCGATTTGTAGTCCAGCGCCAGAAACATTTTATCCAACCTGAAGAT 360
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
30383R-2.in silico     301 TGTGACCTTGCAGCTCGATTTGTAGTCCAGCGCCAGAAACATTTTATCCAACCTGAAGAT 360


30383R-2.IR_full       361 ATCAAGAAGATTAAGAAAGGCGATTCCCTGAAAAGATGCCAAACCGTGCTCATGGAAAGC 420
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
30383R-2.in silico     361 ATCAAGAAGATTAAGAAAGGCGATTCCCTGAAAAGATGCCAAACCGTGCTCATGGAAAGC 420


30383R-2.IR_full       421 GATGAAATGGAGCAGAAAACCTGCGTTGGGTATCGAAGCAAAGTCTCCATGGAGTCCGCC 480
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
30383R-2.in silico     421 GATGAAATGGAGCAGAAAACCTGCGTTGGGTATCGAAGCAAAGTCTCCATGGAGTCCGCC 480


30383R-2.IR_full       481 GTTCTGTT<span class="snp"><tt>N</tt></span>CTCGGTACTGTT 501
                           ||||||||<span class="snp"><tt>&nbsp;</tt></span>||||||||||||
30383R-2.in silico     481 GTTCTGTT<span class="snp"><tt>-</tt></span>CTCGGTACTGTT 501

</PRE>
 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  0  0  0  NM_165563.2  CG30383-RA (CG30383), mRNA 
0   0  4  3  7  NM_167889.1  CG12090-RA, transcript variant A (CG12090), mRNA 
0   0  4  3  7  NM_167888.1  CG12090-RC, transcript variant C (CG12090), mRNA 
0   0  4  3  7  NM_139361.1  CG12090-RB, transcript variant B (CG12090), mRNA 
0   0  3  2  2  NM_079573.3  CG9476-RA (alphaTub85E), mRNA 
0   0  2  4  5  NM_136902.2  CG8858-RA (CG8858), mRNA 
0   0  1  5  4  NM_142042.2  CG10841-RA (CG10841), mRNA 
0   0  1  3  3  NM_141291.2  CG10018-RA (Snm1), mRNA 
0   0  1  3  3  NM_206101.1  CG13168-RC, transcript variant C (CG13168), mRNA 
0   0  1  3  3  NM_206100.1  CG13168-RB, transcript variant B (CG13168), mRNA 
0   0  1  2  2  NM_079448.2  CG8287-RA (Rab8), mRNA 
0   0  1  2  2  NM_001043073.1  CG30054-RC (CG30054), mRNA 
0   0  0  4  9  NM_168490.1  CG32096-RE, transcript variant E (rols), mRNA 
0   0  0  4  8  NM_136535.2  CG2038-RA (CSN7), mRNA 
0   0  0  4  7  NM_079700.1  CG3723-RA (Dhc93AB), mRNA 
0   0  0  4  5  NM_168489.1  CG32096-RC, transcript variant C (rols), mRNA 
0   0  0  4  5  NM_168487.1  CG32096-RB, transcript variant B (rols), mRNA 
0   0  0  4  5  NM_079901.2  CG10811-RA (eIF-4G), mRNA 
0   0  0  4  4  NM_133034.3  CG6867-RA (CG6867), mRNA 
0   0  0  4  3  NM_079613.2  CG7642-RA (ry), mRNA 
0   0  0  3  6  NM_137136.1  CG12866-RA (CG12866), mRNA 
0   0  0  3  4  NM_206517.1  CG12345-RB, transcript variant B (Cha), mRNA 
0   0  0  3  4  NM_057656.2  CG12345-RA, transcript variant A (Cha), mRNA 
0   0  0  3  4  NM_140472.1  CG13466-RA (CG13466), mRNA 
0   0  0  3  3  NM_165259.1  CG31801-RA (CG31801), mRNA 
0   0  0  3  3  NM_079773.2  CG11853-RA (to), mRNA 
0   0  0  3  3  NM_142989.3  CG6413-RA (Dis3), mRNA 
0   0  0  3  2  NM_130589.1  CG14801-RB, transcript variant B (CG14801), mRNA 
0   0  0  3  2  NM_166908.1  CG14801-RD, transcript variant D (CG14801), mRNA 
0   0  0  3  2  NM_166907.1  CG14801-RC, transcript variant C (CG14801), mRNA 
 Pathways (updated: 2024/04/26)
 KEGG Pathway

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