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Notice:
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Suspension of shipments during Golden Week Holidays: From 29 April to 13 May, deadline 16 April.
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| NIG-RNAi Strains Detail |
| Request : Click the "Order" button to request for this stock |
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| Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
| Stock ID |
2163R-2 |
| Symbol |
Pabp2 |
Full Name |
Pabp2 |
| CG No |
CG2163 |
Old CG No |
CG2163 |
| Synonyms |
pabp2, CG2163, pAbp2, rox2, dpabII, ROX2, Rox2, Pabp2, PABP2 |
| Accession No (Link to NCBI) |
NM_057554.2 |
| Inserted Chr. |
ll |
| Insertional Mutation |
|
| Phenotype induced by Act5C-GAL4 at 28 degrees |
lethal |
| Map Viewer |
|
Reference
[Please submit your publication]
|
Shan L, Wu C, Chen D, Hou L, Li X, Wang L, Chu X, Hou Y, Wang Z.<br> Regulators of alternative polyadenylation operate at the transition from mitosis to meiosis.<br> J Genet Genomics (2017) 44(2) 95-106
[
PubMed ID = 28190776
]
[
RRC reference
]
|
| Comment |
|
| Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
| Primer Seq. 5' |
aaggcctacatggccggaccgTCCGTCTACGTGGGCAATGTG |
| Primer Seq. 3' |
aatctagaggtaccGGAGCGTAGTAATTGGCGCGA |
| Predicted Fragment Size |
380 |
| IR fragment full Seq |
0001 TCCGTCTACG TGGGCAATGT GGACTACGGC GCATCGGCCG AGGAACTGGA GGCCCACTTC
0061 CACGGATGCG GCACCATCAA CCGAGTAACC ATACTCTGCA ACAAGGCTGA CGGGCACCCC
0121 AAGGGATTCG CATACATTGA GTTTGGTTCC AAGGAGTTTG TCGAGACGGC ATTGGCCATG
0181 AACGAAACCC TCTTCCGAGG GCGTCAAATA AAGGTAATGT CGAAGCGCAC AAACCGCCCT
0241 GGACTCTCCA CCACAAACCG TTTCGCACGC GGCAGCTTCC GGGGTCGAGG AGCCCGTGTC
0301 TCCCGGGCGT NGCTGTCACT CCACCTTCCG AGGCGCCCGA AGAGCTATGG GTTACCGTGG
0361 TCGCGCCAAT TACTACGCTC C |
| in silico PCR Fragment |
0001 TCCGTCTACG TGGGCAATGT GGACTACGGC GCATCGGCCG AGGAACTGGA GGCCCACTTC
0061 CACGGATGCG GCACAATCAA CCGAGTAACC ATACTCTGCA ACAAGGCTGA CGGGCACCCC
0121 AAGGGATTCG CATACATTGA GTTTGGTTCC AAGGAGTTTG TCGAGACGGC ATTGGCCATG
0181 AACGAAACCC TCTTCCGAGG GCGTCAAATA AAGGTAATGT CGAAGCGCAC AAACCGCCCT
0241 GGACTCTCCA CCACAAACCG TTTCGCACGC GGCAGCTTCC GGGGTCGAGG AGCCCGTGTC
0301 TCCCGGGCGT -GCTGTCACT CCACCTTCCG AGGCGCCCGA AGAGCTATGG GTTACCGTGG
0361 TCGCGCCAAT TACTACGCTC C |
| Assemble Data |
<PRE>
2163R-2.IR_full 1 TCCGTCTACGTGGGCAATGTGGACTACGGCGCATCGGCCGAGGAACTGGAGGCCCACTTC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
2163R-2.in silico 1 TCCGTCTACGTGGGCAATGTGGACTACGGCGCATCGGCCGAGGAACTGGAGGCCCACTTC 60
2163R-2.IR_full 61 CACGGATGCGGCAC<span class="snp"><tt>C</tt></span>ATCAACCGAGTAACCATACTCTGCAACAAGGCTGACGGGCACCCC 120
||||||||||||||<span class="snp"><tt> </tt></span>|||||||||||||||||||||||||||||||||||||||||||||
2163R-2.in silico 61 CACGGATGCGGCAC<span class="snp"><tt>A</tt></span>ATCAACCGAGTAACCATACTCTGCAACAAGGCTGACGGGCACCCC 120
2163R-2.IR_full 121 AAGGGATTCGCATACATTGAGTTTGGTTCCAAGGAGTTTGTCGAGACGGCATTGGCCATG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
2163R-2.in silico 121 AAGGGATTCGCATACATTGAGTTTGGTTCCAAGGAGTTTGTCGAGACGGCATTGGCCATG 180
2163R-2.IR_full 181 AACGAAACCCTCTTCCGAGGGCGTCAAATAAAGGTAATGTCGAAGCGCACAAACCGCCCT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
2163R-2.in silico 181 AACGAAACCCTCTTCCGAGGGCGTCAAATAAAGGTAATGTCGAAGCGCACAAACCGCCCT 240
2163R-2.IR_full 241 GGACTCTCCACCACAAACCGTTTCGCACGCGGCAGCTTCCGGGGTCGAGGAGCCCGTGTC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
2163R-2.in silico 241 GGACTCTCCACCACAAACCGTTTCGCACGCGGCAGCTTCCGGGGTCGAGGAGCCCGTGTC 300
2163R-2.IR_full 301 TCCCGGGCGT<span class="snp"><tt>N</tt></span>GCTGTCACTCCACCTTCCGAGGCGCCCGAAGAGCTATGGGTTACCGTGG 360
||||||||||<span class="snp"><tt> </tt></span>|||||||||||||||||||||||||||||||||||||||||||||||||
2163R-2.in silico 301 TCCCGGGCGT<span class="snp"><tt>-</tt></span>GCTGTCACTCCACCTTCCGAGGCGCCCGAAGAGCTATGGGTTACCGTGG 360
2163R-2.IR_full 361 TCGCGCCAATTACTACGCTCC 381
|||||||||||||||||||||
2163R-2.in silico 361 TCGCGCCAATTACTACGCTCC 381
</PRE>
|
| Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
|
| cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
| 100 |
362 |
0 |
0 |
0 |
NM_057554.2 |
CG2163-RA, transcript variant A (Pabp2), mRNA |
| 100 |
362 |
0 |
0 |
0 |
NM_165589.1 |
CG2163-RB, transcript variant B (Pabp2), mRNA |
| 0 |
0 |
7 |
3 |
2 |
NM_165972.1 |
CG30058-RA (CG30058), mRNA |
| 0 |
0 |
3 |
4 |
2 |
NM_134601.1 |
CG1718-RA (CG1718), mRNA |
| 0 |
0 |
3 |
3 |
3 |
NM_135301.2 |
CG7196-RA, transcript variant A (CG7196), mRNA |
| 0 |
0 |
3 |
3 |
3 |
NM_164770.1 |
CG7196-RB, transcript variant B (CG7196), mRNA |
| 0 |
0 |
3 |
2 |
2 |
NM_137843.2 |
CG4329-RA, transcript variant A (CG4329), mRNA |
| 0 |
0 |
1 |
3 |
2 |
NM_140284.1 |
CG6793-RA (CG6793), mRNA |
| 0 |
0 |
1 |
2 |
3 |
NM_169177.1 |
CG2507-RB, transcript variant B (sas), mRNA |
| 0 |
0 |
1 |
2 |
3 |
NM_057263.2 |
CG2507-RA, transcript variant A (sas), mRNA |
| 0 |
0 |
0 |
4 |
4 |
NM_132476.2 |
CG1657-RA (CG1657), mRNA |
| 0 |
0 |
0 |
4 |
2 |
NM_079235.2 |
CG8571-RA, transcript variant A (smid), mRNA |
| 0 |
0 |
0 |
4 |
2 |
NM_206287.1 |
CG8571-RB, transcript variant B (smid), mRNA |
| 0 |
0 |
0 |
4 |
2 |
NM_078873.2 |
CG15162-RA (MESR3), mRNA |
| 0 |
0 |
0 |
3 |
8 |
NM_141731.1 |
CG3996-RA (CG3996), mRNA |
| 0 |
0 |
0 |
3 |
6 |
NM_132214.1 |
CG15335-RB (CG15335), mRNA |
| 0 |
0 |
0 |
3 |
5 |
NM_132522.2 |
CG32662-RA (CG32662), mRNA |
| 0 |
0 |
0 |
3 |
5 |
NM_167128.1 |
CG32719-RA (CG32719), mRNA |
| 0 |
0 |
0 |
3 |
5 |
NM_167174.1 |
CG32708-RA (CG32708), mRNA |
| 0 |
0 |
0 |
3 |
3 |
NM_168297.1 |
CG32026-RA (CG32026), mRNA |
| 0 |
0 |
0 |
3 |
3 |
NM_141367.1 |
CG15590-RA (Osi5), mRNA |
| 0 |
0 |
0 |
3 |
3 |
NM_141546.2 |
CG11737-RA (CG11737), mRNA |
| 0 |
0 |
0 |
3 |
2 |
NM_138238.1 |
CG13913-RA (CG13913), mRNA |
| 0 |
0 |
0 |
3 |
2 |
NM_143243.2 |
CG14245-RA, transcript variant A (CG14245), mRNA |
| 0 |
0 |
0 |
3 |
2 |
NM_144003.2 |
CG14246-RA, transcript variant A (CG14246), mRNA |
| 0 |
0 |
0 |
3 |
2 |
NM_137794.2 |
CG11073-RA (CG11073), mRNA |
| 0 |
0 |
0 |
3 |
2 |
NM_058125.3 |
CG1341-RA (Rpt1), mRNA |
| 0 |
0 |
0 |
3 |
2 |
NM_206364.1 |
CG11552-RA (CG11552), mRNA |
| 0 |
0 |
0 |
2 |
7 |
NM_132097.1 |
CG3950-RA (CG3950), mRNA |
| 0 |
0 |
0 |
2 |
6 |
NM_135755.1 |
CG9932-RA (CG9932), mRNA |
|
|
Pathways (updated: 2024/04/26)
|
| KEGG Pathway |
dme03015
:
mRNA surveillance pathway
|
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