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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 18648R-1 
 Symbol cp309  Full Name cp309 
 CG No CG33957  Old CG No CG18648 
 Synonyms D-PLP, CG6735, CG18648, CG13459, d-plp, CP309, AKAP450, l(3)s2172, CG33957, cp309, PACT, dplp 
 Accession No (Link to NCBI) NM_001032402.1 
 Inserted Chr. ll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees viable 
 Map Viewer
 Reference
[Please submit your publication] 		 
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5' 
aaggcctacatggccggaccgCTGCGAACGAGATGGATTGAG 
 Primer Seq. 3' 
aatctagaggtaccCTTGTTGATTCACTGCACCTG 
 Predicted Fragment Size 
500 
 IR fragment full Seq 
0001 CTGCGAACGA GATGGATTGA GGGAGCTGTC CAAGAGTTTC CGCAGCGTAC TTTGTCGGCT 
0061 GGCCAAGTGT GTGGCCCACT GTGAGGAGGA TTTGAATGCC ACACTATCCG AGGAGGTGCA 
0121 ACGCCTGCTG TTCCACAGTC GCAGTCAAGA TGGAGGTGAT GATCTGGAGG CTACCATTAG 
0181 TAGCTCCCTA AATAATACGA AGCACATGCT CCGTGTGCCG GATGTCCACA GCCTGCTGGA 
0241 AGTTGTGGAG GATCCGAGTT TGGTGCAGTT CATCGACAGC AAGAGCAACG AAGAGCCAAG 
0301 TGAGGACTTC GATTTGAATG ATTGCCTAGA GCGTTTGAAG TCGGAAGCCT CCTACCTGTT 
0361 GCATTTGTCA GAGGATTTGC ATAAGCAGCG GACACACGAT GAGTCGTCGG AGCACTTGGA 
0421 CGAACCGGAA AAACAGGAGC ATGAgCTCTG CTGCGAGGCG GAAGATgGTC TGAAGACCAC 
0481 AGGTGCAGTG AATCAACAAG  
 in silico PCR Fragment 
0001 CTGCGAACGA GATGGATTGA GGGAGCTGTC CAAGAGTTTC CGCAGCGTAC TTTGTCGGCT 
0061 GGCCAAGTGT GTGGCCCACT GTGAGGAGGA TTTGAATGCC ACACTATCCG AGGAGGTGCA 
0121 ACGCCTGCTG TTCCACAGTC GCAGTCAAGA TGGAGGTGAT GATCTGGAGG CTACCATTAG 
0181 TAGCTCCCTA AATAATACGA AGCACATGCT CCGTGTGCCG GATGTCCACA GCCTGCTGGA 
0241 AGTTGTGGAG GATCCGAGTT TGGTGCAGTT CATCGACAGC AAGAGCAACG AAGAGCCAAG 
0301 TGAGGACTTC GATTTGAATG ATTGCCTAGA GCGTTTGAAG TCGGAAGCCT CCTACCTGTT 
0361 GCATTTGTCA GAGGATTTGC ATAAGCAGCG GACACACGAT GAGTCGTCGG AGCACTTGGA 
0421 CGAACCGGAA AAACAGGAGC ATGAGCTCTG CTGCGAGGCG GAAGATGGTC TGAAGACCAC 
0481 AGGTGCAGTG AATCAACAAG  
 Assemble Data 
<PRE>

18648R-1.IR_full       1   CTGCGAACGAGATGGATTGAGGGAGCTGTCCAAGAGTTTCCGCAGCGTACTTTGTCGGCT 60
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
18648R-1.in silico     1   CTGCGAACGAGATGGATTGAGGGAGCTGTCCAAGAGTTTCCGCAGCGTACTTTGTCGGCT 60


18648R-1.IR_full       61  GGCCAAGTGTGTGGCCCACTGTGAGGAGGATTTGAATGCCACACTATCCGAGGAGGTGCA 120
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
18648R-1.in silico     61  GGCCAAGTGTGTGGCCCACTGTGAGGAGGATTTGAATGCCACACTATCCGAGGAGGTGCA 120


18648R-1.IR_full       121 ACGCCTGCTGTTCCACAGTCGCAGTCAAGATGGAGGTGATGATCTGGAGGCTACCATTAG 180
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
18648R-1.in silico     121 ACGCCTGCTGTTCCACAGTCGCAGTCAAGATGGAGGTGATGATCTGGAGGCTACCATTAG 180


18648R-1.IR_full       181 TAGCTCCCTAAATAATACGAAGCACATGCTCCGTGTGCCGGATGTCCACAGCCTGCTGGA 240
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
18648R-1.in silico     181 TAGCTCCCTAAATAATACGAAGCACATGCTCCGTGTGCCGGATGTCCACAGCCTGCTGGA 240


18648R-1.IR_full       241 AGTTGTGGAGGATCCGAGTTTGGTGCAGTTCATCGACAGCAAGAGCAACGAAGAGCCAAG 300
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
18648R-1.in silico     241 AGTTGTGGAGGATCCGAGTTTGGTGCAGTTCATCGACAGCAAGAGCAACGAAGAGCCAAG 300


18648R-1.IR_full       301 TGAGGACTTCGATTTGAATGATTGCCTAGAGCGTTTGAAGTCGGAAGCCTCCTACCTGTT 360
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
18648R-1.in silico     301 TGAGGACTTCGATTTGAATGATTGCCTAGAGCGTTTGAAGTCGGAAGCCTCCTACCTGTT 360


18648R-1.IR_full       361 GCATTTGTCAGAGGATTTGCATAAGCAGCGGACACACGATGAGTCGTCGGAGCACTTGGA 420
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
18648R-1.in silico     361 GCATTTGTCAGAGGATTTGCATAAGCAGCGGACACACGATGAGTCGTCGGAGCACTTGGA 420


18648R-1.IR_full       421 CGAACCGGAAAAACAGGAGCATGAGCTCTGCTGCGAGGCGGAAGATGGTCTGAAGACCAC 480
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
18648R-1.in silico     421 CGAACCGGAAAAACAGGAGCATGAGCTCTGCTGCGAGGCGGAAGATGGTCTGAAGACCAC 480


18648R-1.IR_full       481 AGGTGCAGTGAATCAACAAG 500
                           ||||||||||||||||||||
18648R-1.in silico     481 AGGTGCAGTGAATCAACAAG 500

</PRE>
 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  0  0  3  NM_001032402.1  CG33957-RB, transcript variant B (cp309), mRNA 
0   0  3  2  2  NM_133101.2  CG7101-RA (CG7101), mRNA 
0   0  2  5  2  NM_167609.1  CG32553-RA (CG32553), mRNA 
0   0  2  2  8  NM_143765.2  CG12218-RA (mei-P26), mRNA 
0   0  1  6  5  NM_137533.3  CG15097-RA, transcript variant A (CG15097), mRNA 
0   0  1  6  5  NM_176232.1  CG15097-RB, transcript variant B (CG15097), mRNA 
0   0  1  3  4  NM_140968.2  CG11796-RB, transcript variant B (CG11796), mRNA 
0   0  1  3  4  NM_168857.1  CG11796-RA, transcript variant A (CG11796), mRNA 
0   0  1  2  7  NM_137771.1  CG4372-RA (CG4372), mRNA 
0   0  1  2  6  NM_142892.2  CG4370-RA, transcript variant A (Irk2), mRNA 
0   0  1  2  6  NM_170076.1  CG4370-RB, transcript variant B (Irk2), mRNA 
0   0  1  2  3  NM_057362.2  CG17579-RA, transcript variant A (sca), mRNA 
0   0  1  2  3  NM_165951.1  CG17579-RB, transcript variant B (sca), mRNA 
0   0  0  8  9  NM_001042810.1  CG10952-RB, transcript variant B (eag), mRNA 
0   0  0  8  9  NM_078603.2  CG10952-RA, transcript variant A (eag), mRNA 
0   0  0  6  6  NM_142485.2  CG7706-RA (CG7706), mRNA 
0   0  0  5  3  NM_057309.2  CG6534-RA (slou), mRNA 
0   0  0  4  7  NM_169610.1  CG6904-RA, transcript variant A (CG6904), mRNA 
0   0  0  4  7  NM_142165.2  CG6904-RB, transcript variant B (CG6904), mRNA 
0   0  0  4  7  NM_169611.1  CG6904-RC, transcript variant C (CG6904), mRNA 
0   0  0  4  7  NM_136727.2  CG18408-RA, transcript variant A (CAP), mRNA 
0   0  0  4  7  NM_166548.2  CG30092-RB, transcript variant B (jbug), mRNA 
0   0  0  4  7  NM_166546.2  CG30092-RD, transcript variant D (jbug), mRNA 
0   0  0  4  4  NM_169902.1  CG5191-RC, transcript variant C (CG5191), mRNA 
0   0  0  4  4  NM_169904.1  CG5191-RA, transcript variant A (CG5191), mRNA 
0   0  0  4  4  NM_142636.1  CG5191-RB, transcript variant B (CG5191), mRNA 
0   0  0  4  4  NM_169905.1  CG5191-RD, transcript variant D (CG5191), mRNA 
0   0  0  4  4  NM_169903.1  CG5191-RE, transcript variant E (CG5191), mRNA 
0   0  0  4  3  NM_164966.2  CG6464-RA (salm), mRNA 
0   0  0  4  3  NM_141858.1  CG17360-RA (CG17360), mRNA 
 Pathways (updated: 2024/04/26)
 KEGG Pathway

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