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NIG-RNAi Strains Detail

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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)

Stock ID

17570R-1

Symbol

CG17570

Full Name

CG17570

CG No

CG17570

Old CG No

CG17570

Synonyms

CG17570

Accession No (Link to NCBI)

NM_136266.1

Inserted Chr.

lll

Insertional Mutation

lethal

Phenotype induced by Act5C-GAL4 at 28 degrees

male lethal

Map Viewer

Reference
[Please submit your publication]

Comment

Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)

Primer Seq. 5'

aaggcctacatggccggaccgTGCCGAACATTGTCGCACTAA

Primer Seq. 3'

aatctagaggtaccGACCAGCGAGCAGATTTCTTT

Predicted Fragment Size

IR fragment full Seq

0001 TGCCGAACAT TGTCGCACTA AAGCTGAGCG CCAgCTATTC CGCTGATGCC GGGCCACAAG 
0061 GACGAGGGCA ATATCCTTGC GCTGGACCAA TTGGCGCTGC AGCAGCAAAT CAGTGCGAAC 
0121 TTCATTTTCC ATGCGATCTC GAACTACAAG AAAACGCCAT CCGAGCGAAA AACGCTGGTC 
0181 TTCATTGCCA AAAAATGGCT GCACATCCAG ATGCTGTGGC GCGAGTTCCG GCTGAGGGAT 
0241 AAGCAAATAC GGCGGCTTGG CCACAAGGAT GCACGCGTTC TGGAGCACGG CTACTTCCAG 
0301 CAGGAACTCT TCGAGCTGGT CCACGAAAAG TATATGGTTG TCCGTGGATT CCTGAGTCGT 
0361 GACAAAAGAA ATCTGCTCGC TGGTC

in silico PCR Fragment

0001 TGCCGAACAT TGTCGCACTA AAGCTGAGCG CCAGCTA-TC CGCTGATGCC GGGCCACAAG 
0061 GACGAGGGCA ATATCCTTGC GCTGGACCAA TTGGCGCTGC AGCAGCAAAT CAGTGCGAAC 
0121 TTCATTTTCC ATGCGATCTC GAACTACAAG AAAACGCCAT CCGAGCGAAA AACGCTGGTC 
0181 TTCATTGCCA AAAAATGGCT GCACATCCAG ATGCTGTGGC GCGAGTTCCG GCTGAGGGAT 
0241 AAGCAAATAC GGCGGCTTGG CCACAAGGAT GCACGCGTTC TGGAGCACGG CTACTTCCAG 
0301 CAGGAACTCT TCGAGCTGGT CCACGAAAAG TATATGGTTG TCCGTGGATT CCTGAGTCGT 
0361 GACAAAAGAA ATCTGCTCGC TGGTC

Assemble Data

<PRE>

17570R-1.IR_full       1   TGCCGAACATTGTCGCACTAAAGCTGAGCGCCAGCTA<span class="snp"><tt>T</tt></span>TCCGCTGATGCCGGGCCACAAG 60
                           |||||||||||||||||||||||||||||||||||||<span class="snp"><tt>&nbsp;</tt></span>||||||||||||||||||||||
17570R-1.in silico     1   TGCCGAACATTGTCGCACTAAAGCTGAGCGCCAGCTA<span class="snp"><tt>-</tt></span>TCCGCTGATGCCGGGCCACAAG 60


17570R-1.IR_full       61  GACGAGGGCAATATCCTTGCGCTGGACCAATTGGCGCTGCAGCAGCAAATCAGTGCGAAC 120
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
17570R-1.in silico     61  GACGAGGGCAATATCCTTGCGCTGGACCAATTGGCGCTGCAGCAGCAAATCAGTGCGAAC 120


17570R-1.IR_full       121 TTCATTTTCCATGCGATCTCGAACTACAAGAAAACGCCATCCGAGCGAAAAACGCTGGTC 180
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
17570R-1.in silico     121 TTCATTTTCCATGCGATCTCGAACTACAAGAAAACGCCATCCGAGCGAAAAACGCTGGTC 180


17570R-1.IR_full       181 TTCATTGCCAAAAAATGGCTGCACATCCAGATGCTGTGGCGCGAGTTCCGGCTGAGGGAT 240
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
17570R-1.in silico     181 TTCATTGCCAAAAAATGGCTGCACATCCAGATGCTGTGGCGCGAGTTCCGGCTGAGGGAT 240


17570R-1.IR_full       241 AAGCAAATACGGCGGCTTGGCCACAAGGATGCACGCGTTCTGGAGCACGGCTACTTCCAG 300
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
17570R-1.in silico     241 AAGCAAATACGGCGGCTTGGCCACAAGGATGCACGCGTTCTGGAGCACGGCTACTTCCAG 300


17570R-1.IR_full       301 CAGGAACTCTTCGAGCTGGTCCACGAAAAGTATATGGTTGTCCGTGGATTCCTGAGTCGT 360
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
17570R-1.in silico     301 CAGGAACTCTTCGAGCTGGTCCACGAAAAGTATATGGTTGTCCGTGGATTCCTGAGTCGT 360


17570R-1.IR_full       361 GACAAAAGAAATCTGCTCGCTGGTC 385
                           |||||||||||||||||||||||||
17570R-1.in silico     361 GACAAAAGAAATCTGCTCGCTGGTC 385

</PRE>

Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)

Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch

cv	0mm	1mm	2mm	3mm	target transcript	off target name
100	366	0	0	0	NM_136266.1	CG17570-RA (CG17570), mRNA
0	0	5	4	8	NM_079321.2	CG10571-RA (ara), mRNA
0	0	4	3	3	NM_135172.2	CG9499-RA (ppk7), mRNA
0	0	1	5	4	NM_168715.1	CG7930-RB, transcript variant B (TpnC73F), mRNA
0	0	1	5	4	NM_079398.2	CG7930-RA, transcript variant A (TpnC73F), mRNA
0	0	1	5	2	NM_132084.2	CG12219-RA (CG12219), mRNA
0	0	1	5	2	NM_079007.2	CG17716-RA (fas), mRNA
0	0	1	4	5	NM_168288.1	CG32029-RA (CG32029), mRNA
0	0	1	4	4	NM_130658.2	CG10260-RB (CG10260), mRNA
0	0	1	4	3	NM_132072.1	CG14446-RA (CG14446), mRNA
0	0	1	4	2	NM_167230.1	CG32683-RA (CG32683), mRNA
0	0	1	3	5	NM_057842.2	CG16858-RA (vkg), mRNA
0	0	1	3	3	NM_176242.1	CG33133-RA (grau), mRNA
0	0	1	3	2	NM_135908.2	CG18482-RA (CG18482), mRNA
0	0	1	2	4	NM_080325.3	CG6450-RC (lva), mRNA
0	0	1	2	4	NM_137835.1	CG11362-RA (CG11362), mRNA
0	0	1	2	3	NM_164369.1	CG31975-RA (CG31975), mRNA
0	0	1	2	3	NM_142635.2	CG5180-RA (CG5180), mRNA
0	0	1	2	3	NM_057609.4	CG7704-RA (Taf5), mRNA
0	0	1	2	2	NM_079649.2	CG18740-RA (mor), mRNA
0	0	1	2	2	NM_169394.1	CG17230-RB, transcript variant B (CG17230), mRNA
0	0	1	2	2	NM_141820.1	CG17230-RA, transcript variant A (CG17230), mRNA
0	0	1	2	2	NM_143156.2	CG4730-RA (CG4730), mRNA
0	0	0	7	4	NM_140364.2	CG11259-RA (MICAL-like), mRNA
0	0	0	6	2	NM_079638.2	CG4920-RA (ea), mRNA
0	0	0	4	5	NM_079507.2	CG2530-RA (corto), mRNA
0	0	0	4	5	NM_137344.2	CG30456-RA (CG30456), mRNA
0	0	0	4	3	NM_135454.4	CG3838-RB, transcript variant B (CG3838), mRNA
0	0	0	4	3	NM_001014479.1	CG33529-RB, transcript variant B (Rapgap1), mRNA
0	0	0	3	10	NM_169389.2	CG5270-RB, transcript variant B (CG5270), mRNA

Pathways (updated: 2024/04/26)

KEGG Pathway

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