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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 17352R-2 
 Symbol CG17352  Full Name CG17352 
 CG No CG17352  Old CG No CG17352 
 Synonyms CT33100, CG17352 
 Accession No (Link to NCBI) NM_168263.1 
 Inserted Chr. ll 
 Insertional Mutation  3 lethal 
 Phenotype induced by Act5C-GAL4 at 28 degrees viable 
 Map Viewer
 Reference
[Please submit your publication] 		 
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5' 
aaggcctacatggccggaccgTGTGCCGAGTGCGTCATCCGA 
 Primer Seq. 3' 
aatctagaggtaccGAGTCCAGCATCTGGCCATTG 
 Predicted Fragment Size 
500 
 IR fragment full Seq 
0001 TGTGCCGAGT GCGTCATCCG AGTGGCCTTC ACCTATGCCA ACTTCTCCAA AAGTTGCGGC 
0061 AATACGGGTG GCAAGTCCAG CATGTGTCCC TGCGAGCATA TCCAGTTCTC GGAGCCGCCC 
0121 TATGATTCCA CCATTTCCGG CCAAGAGTTC TGTGGAGATG GCAAGGTGTT TCGGAGCAAA 
0181 ACCAGGACAC TGCAGTTGAA ATTCTTCTAC AGAGCCAGCA ATGCGCACGT GTTCTCCCTT 
0241 CAATACTTCT CGGAACGCAA CGTGCGGATA GTCAGTGGCT CCCCCAAGCA GTCTATTGTG 
0301 GGCAATGGGA GTACAAAGTC CCAGCCACAA GTGATCTCCA CGCCGTATTT CCCGATGGCA 
0361 TATCCACGCG ACTATGGTAT CGAACACATC CTCACCTGCG AGGCGGACAA CTGCCAGGTG 
0421 CGTTTGGATT TTACCGACTT CCAGCTGGGC CTCACCTCCA CCCTAGAGAT CTTCGACTCC 
0481 AATGGCCAGA TGCTGGACTC  
 in silico PCR Fragment 
0001 TGTGCCGAGT GCGTCATCCG AGTGGCCTTC ACCTATGCCA ACTTCTCCAA AAGTTGCGGC 
0061 AATACGGGTG GCAAGTCCAG CATGTGTCCC TGCGAGCATA TCCAGTTCTC GGAGCCGCCC 
0121 TATGATTCCA CCATTTCCGG CCAAGAGTTC TGTGGAGATG GCAAGGTGTT TCGGAGCAAA 
0181 ACCAGGACAC TGCAGTTGAA ATTCTTCTAC AGAGCCAGCA ATGCGCACGT GTTCTCCCTT 
0241 CAATACTTCT CGGAACGCAA CGTGCGGATA GTCAGTGGCT CCCCCAAGCA GTCTATTGTG 
0301 GGCAATGGGA GTACAAAGTC CCAGCCACAA GTGATCTCCA CGCCGTATTT CCCGATGGCA 
0361 TATCCACGCG ACTATGGTAT CGAACACATC CTCACCTGCG AGGCGGACAA CTGCCAGGTG 
0421 CGTTTGGATT TTACCGACTT CCAGCTGGGC CTCACCTCCA CCCTAGAGAT CTTCGACTCC 
0481 AATGGCCAGA TGCTGGACTC  
 Assemble Data 
<PRE>

17352R-2.IR_full       1   TGTGCCGAGTGCGTCATCCGAGTGGCCTTCACCTATGCCAACTTCTCCAAAAGTTGCGGC 60
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
17352R-2.in silico     1   TGTGCCGAGTGCGTCATCCGAGTGGCCTTCACCTATGCCAACTTCTCCAAAAGTTGCGGC 60


17352R-2.IR_full       61  AATACGGGTGGCAAGTCCAGCATGTGTCCCTGCGAGCATATCCAGTTCTCGGAGCCGCCC 120
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
17352R-2.in silico     61  AATACGGGTGGCAAGTCCAGCATGTGTCCCTGCGAGCATATCCAGTTCTCGGAGCCGCCC 120


17352R-2.IR_full       121 TATGATTCCACCATTTCCGGCCAAGAGTTCTGTGGAGATGGCAAGGTGTTTCGGAGCAAA 180
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
17352R-2.in silico     121 TATGATTCCACCATTTCCGGCCAAGAGTTCTGTGGAGATGGCAAGGTGTTTCGGAGCAAA 180


17352R-2.IR_full       181 ACCAGGACACTGCAGTTGAAATTCTTCTACAGAGCCAGCAATGCGCACGTGTTCTCCCTT 240
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
17352R-2.in silico     181 ACCAGGACACTGCAGTTGAAATTCTTCTACAGAGCCAGCAATGCGCACGTGTTCTCCCTT 240


17352R-2.IR_full       241 CAATACTTCTCGGAACGCAACGTGCGGATAGTCAGTGGCTCCCCCAAGCAGTCTATTGTG 300
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
17352R-2.in silico     241 CAATACTTCTCGGAACGCAACGTGCGGATAGTCAGTGGCTCCCCCAAGCAGTCTATTGTG 300


17352R-2.IR_full       301 GGCAATGGGAGTACAAAGTCCCAGCCACAAGTGATCTCCACGCCGTATTTCCCGATGGCA 360
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
17352R-2.in silico     301 GGCAATGGGAGTACAAAGTCCCAGCCACAAGTGATCTCCACGCCGTATTTCCCGATGGCA 360


17352R-2.IR_full       361 TATCCACGCGACTATGGTATCGAACACATCCTCACCTGCGAGGCGGACAACTGCCAGGTG 420
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
17352R-2.in silico     361 TATCCACGCGACTATGGTATCGAACACATCCTCACCTGCGAGGCGGACAACTGCCAGGTG 420


17352R-2.IR_full       421 CGTTTGGATTTTACCGACTTCCAGCTGGGCCTCACCTCCACCCTAGAGATCTTCGACTCC 480
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
17352R-2.in silico     421 CGTTTGGATTTTACCGACTTCCAGCTGGGCCTCACCTCCACCCTAGAGATCTTCGACTCC 480


17352R-2.IR_full       481 AATGGCCAGATGCTGGACTC 500
                           ||||||||||||||||||||
17352R-2.in silico     481 AATGGCCAGATGCTGGACTC 500

</PRE>
 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  0  0  0  NM_139957.2  CG17352-RC, transcript variant C (CG17352), mRNA 
100   482  0  0  0  NM_168264.1  CG17352-RB, transcript variant B (CG17352), mRNA 
100   482  0  0  0  NM_168263.1  CG17352-RA, transcript variant A (CG17352), mRNA 
96.47   465  5  2  3  NM_001038906.1  CG17352-RD, transcript variant D (CG17352), mRNA 
0   0  4  2  3  NM_137982.2  CG5532-RA (CG5532), mRNA 
0   0  2  3  5  NM_141431.1  CG1105-RA (CG1105), mRNA 
0   0  2  3  3  NM_166318.1  CG15105-RB, transcript variant B (CG15105), mRNA 
0   0  2  3  3  NM_137546.2  CG15105-RA, transcript variant A (CG15105), mRNA 
0   0  1  3  2  NM_079956.2  CG18455-RA, transcript variant A (Optix), mRNA 
0   0  1  3  2  NM_134720.2  CG4629-RA, transcript variant A (CG4629), mRNA 
0   0  1  3  2  NM_164404.2  CG4629-RB, transcript variant B (CG4629), mRNA 
0   0  1  3  2  NM_205888.1  CG4629-RC, transcript variant C (CG4629), mRNA 
0   0  1  2  5  NM_170239.2  CG31092-RA, transcript variant A (LpR2), mRNA 
0   0  1  2  4  NM_136445.2  CG1605-RA (az2), mRNA 
0   0  1  2  4  NM_132626.1  CG4349-RA (Fer3HCH), mRNA 
0   0  1  2  2  NM_176746.1  CG5424-RC, transcript variant C (f), mRNA 
0   0  1  2  2  NM_176745.1  CG5424-RD, transcript variant D (f), mRNA 
0   0  1  2  2  NM_001042819.1  CG5424-RF, transcript variant F (f), mRNA 
0   0  1  2  2  NM_078660.2  CG5424-RB, transcript variant B (f), mRNA 
0   0  0  6  6  NM_169395.1  CG5308-RB, transcript variant B (dpr5), mRNA 
0   0  0  6  6  NM_141823.2  CG5308-RA, transcript variant A (dpr5), mRNA 
0   0  0  5  8  NM_206697.1  CG1522-RB, transcript variant B (cac), mRNA 
0   0  0  5  8  NM_206693.1  CG1522-RF, transcript variant F (cac), mRNA 
0   0  0  5  8  NM_001014732.1  CG1522-RJ, transcript variant J (cac), mRNA 
0   0  0  5  8  NM_001014735.1  CG1522-RG, transcript variant G (cac), mRNA 
0   0  0  5  8  NM_206695.1  CG1522-RD, transcript variant D (cac), mRNA 
0   0  0  5  8  NM_206694.1  CG1522-RE, transcript variant E (cac), mRNA 
0   0  0  5  8  NM_001014733.1  CG1522-RI, transcript variant I (cac), mRNA 
0   0  0  5  8  NM_001014734.1  CG1522-RH, transcript variant H (cac), mRNA 
0   0  0  5  8  NM_206696.1  CG1522-RC, transcript variant C (cac), mRNA 
 Pathways (updated: 2024/04/26)
 KEGG Pathway

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