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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 1722R-2 
 Symbol CG1722  Full Name CG1722 
 CG No CG1722  Old CG No CG1722 
 Synonyms CG1722 
 Accession No (Link to NCBI) NM_134599.1 
 Inserted Chr. lll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees lethal 
 Map Viewer
 Reference
[Please submit your publication]
 
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgAAGCGGCTACAAAACCGCTTA 
 Primer Seq. 3'
aatctagaggtaccCTTTACGCCGAGATTGCAGAA 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 AAGCGGCTAC AAAACCGCTT AGCACAAAGA AGCTACAGTC CAAAGTCAAA AGTGTCGGTA 
0061 AGACCAAGCC GAAAATGCAG CAGAAATCCG TAAAGCAACC GCTCAAGAAA CCCATGAGAC 
0121 GATCTCCGCT GATGCGAGCC GCCCTCCAGC CCACCATTTT GGGCTTGGCC AAGGAAAAGC 
0181 CGGTGAAAAA GTCGCGGGTG ACCTTCAAGA AGTCACATCG TCGGCCGCTG GACGCCATGC 
0241 AATCCCTTGG GATGTCCCGC AGGACCAGAC TCATAGACGC CAGTCCCCAG AGAAAGGCCA 
0301 AGGGTACTTC GGTACTGTTC CTGGGTAAGG ATTCAAGGAC CACCAAGATG CCCAAGAAAA 
0361 TGAAGCCCTC AAGCGAAAAG CCAGCAAGCG AAAAAAATCA GTTACCCCGG TTAAAAAGAC 
0421 GGATGGAATT CCGAGTAATG ACGAAAGCCG AGACTAGGGC TACCGACGGC GTGAACTTCT 
0481 TCTGCAATCT CGGCGTAAAG  
 in silico PCR Fragment
0001 AAGCGGCTAC AAAACCGCTT AGCACAAAGA AGCTACAGTC CAAAGTCAAA AGTGTCGGTA 
0061 AGACCAAGCC GAAAATGCAG CAGAAATCCG TAAAGCAACC GCTCAAGAAA CCCATGAGAC 
0121 GATCTCCGCT GATGCGAGCC GCCCTCCAGC CCACCATTTT GGGCTTGGCC AAGGAAAAGC 
0181 CGGTGAAAAA GTCGCGGGTG ACCTTCAAGA AGTCACATCG TCGGCCGCTG GACGCCATGC 
0241 AATCCCTTGG GATGTCCCGC AGGACCAGAC TCATAGACGC CAGTCCCCAG AGAAAGGCCA 
0301 AGGGTACTTC GGTACTGTTC CTGGGTAAGG ATTCAAGGAC CACCAAGATG CCCAAGAAAA 
0361 TGAAGCCCTC AAGCGAAAAG CCTGCAAGCG AAAAAAATCA GTTACCCCGG TTAAAAAGAC 
0421 GGATGGAATT CCGAGTAATG ACGAAAGCCG AGACTAGGGC TACCGACGGC GTGAACTTCT 
0481 TCTGCAATCT CGGCGTAAAG  
 Assemble Data

1494R-2.IR_full       1   GTGGCTGCCTTTTTCCGGAACGCTCTCAACGCCGTTCGGGTGTTGACAATCCTGTGGATA 60
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
1494R-2.in silico     1   GTGGCTGCCTTTTTCCGGAACGCTCTCAACGCCGTTCGGGTGTTGACAATCCTGTGGATA 60


1494R-2.IR_full       61  ATGTCCTACGTGCCCACCTTCATTCTGTCGAACAACTTGGAGGGCAATATTCACGCCCTG 120
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
1494R-2.in silico     61  ATGTCCTACGTGCCCACCTTCATTCTGTCGAACAACTTGGAGGGCAATATTCACGCCCTG 120


1494R-2.IR_full       121 CGCTACGTGTCGTATGCGCTGCCAAATGTGGTGGCAACTCTGGTGATTGAATTTCTCATC 180
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
1494R-2.in silico     121 CGCTACGTGTCGTATGCGCTGCCAAATGTGGTGGCAACTCTGGTGATTGAATTTCTCATC 180


1494R-2.IR_full       181 GAACGGGAGTCGATCGTCCATATCACGTGGGAGGACTCTGGGTACAGACTCAACTATGAC 240
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
1494R-2.in silico     181 GAACGGGAGTCGATCGTCCATATCACGTGGGAGGACTCTGGGTACAGACTCAACTATGAC 240


1494R-2.IR_full       241 GGCGGCCACATAACGGTAAACCGCGAGCTCCTGGATCTTCATGCTGAATGCTTTGGTTTA 300
                          ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
1494R-2.in silico     241 GGCGGCCACATAACGGT-AACCGCGAGCTCCTGGATCTTCATGCTGAATGCTTTGGTTTA 300


1494R-2.IR_full       301 CTGTGCAATTGGTCTCTATGTGGACATGTGGCGGGGTGGCGACCGATCGGGTAAGAAGAT 360
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
1494R-2.in silico     301 CTGTGCAATTGGTCTCTATGTGGACATGTGGCGGGGTGGCGACCGATCGGGTAAGAAGAT 360


1494R-2.IR_full       361 GAAGAAACCCAACACGAATGCCAGTGTACAAGAAGATCCATACCACGAACGGGGGGACAG 420
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
1494R-2.in silico     361 GAAGAAACCCAACACGAATGCCAGTGTACAAGAAGATCCATACCACGAACGGGGGGACAG 420


1494R-2.IR_full       421 TTTCACTCATCAGGGTCAGGCCATTGGCGTTAACTCAACGAAAATCTATGAGGTGGAACC 480
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
1494R-2.in silico     421 TTTCACTCATCAGGGTCAGGCCATTGGCGTTAACTCAACGAAAATCTATGAGGTGGAACC 480


1494R-2.IR_full       481 CTCACATCGGCGCTTCAAGCT 501
                          |||||||||||||||||||||
1494R-2.in silico     481 CTCACATCGGCGCTTCAAGCT 501

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
 

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