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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 16979R-1 
 Symbol CG16979  Full Name CG16979 
 CG No CG16979  Old CG No CG16979 
 Synonyms CG16979, UFSP2 
 Accession No (Link to NCBI) NM_140522.1 
 Inserted Chr. lll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees lethal 
 Map Viewer
 Reference
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 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5' 
aaggcctacatggccggaccgCATGGCCATTCTCTGCCGCAA 
 Primer Seq. 3' 
aatctagaggtaccAGCAGATCGTCTGCAGCGAGC 
 Predicted Fragment Size 
500 
 IR fragment full Seq 
0001 CATGGCCATT CTCTGCCGCA AAACGAAGCT CCAACGGCTA TACGACGTAC TCATCGAGAG 
0061 CATCTGCAGA GGTCTCAGAT TGTTCGAACT GAGCCTGATT GAGCATCTCA CGGAGTCGGG 
0121 AAGTGGAAAG CTGCTGGTGC CCGCTAGCTA TCACTTCTAC CCACAAGAGT TTGGTCACTT 
0181 CGNTGAGCTG CGCCNTATCT GGAAGGTCTG AGTGACGATA CACCAAGCAT GCTAATGAAG 
0241 ACGCAAGCGC CTGCATCGAC AGTTTGCTTT GCCCATCAGT CGTCCTTATT TNCCGCAGGG 
0301 CCAACCAGAT GATTTTCCTA GGTGAAACGG AGGACGCACC ATGGACTCCG CTGCTAAATA 
0361 CCCACATCGG ATTACGTCCC AGTGGAGTTG TCGACGGCAA AGAGTACTTA GTAAATGGTA 
0421 ACTACCATTA CTATCATTAC CTGCAACAGC AGGTGCAGGA CAAGGGATGG GGATgNGCAT 
0481 ATCGCTCGCT GCAGACGATC TGCT 
 in silico PCR Fragment 
0001 CATGGCCATT CTCTGCCGCA AAACGAAGCT CCAACGGCTA TACGACGTAC TCATCGAGAG 
0061 CATCTGCAGA GGTCTCAGAT TGTTCGAACT GAGCCTGATT GAGCATCTCA CGGAGTCGGG 
0121 AAGTGGAAAG CTGCTGGTGC CCGCTAGCTA TCACTTCTAC CCACAAGAGT TTGGTCACTT 
0181 CG-TGAGCTG CGCC-TATCT GGAAGGTCTG AGTGACGATA CACCAAGCAT GCTAATG-AG 
0241 ACGCAAGCGC CTGCATCGAC AGTTTGCTTT GCCCATCAGT CGTCCTTATT T-CCGCAGGG 
0301 CCAACCAGAT GCTTTTCCTA GGTGAAACGG AGGACGCACC ATGGACTCCG CTGCTAAATA 
0361 CCCACATCGG ATTACGTCCC AGTGGAGTTG TCGACGGCAA AGAGTACTTA GTAAATGGTA 
0421 ACTACCATTA CTATCATTAC CTGCAACAGC AGGTGCAGGA CAAGGGATGG GGATGCGCAT 
0481 ATCGCTCGCT GCAGACGATC TGCT 
 Assemble Data 
<PRE>

16979R-1.IR_full       1   CATGGCCATTCTCTGCCGCAAAACGAAGCTCCAACGGCTATACGACGTACTCATCGAGAG 60
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
16979R-1.in silico     1   CATGGCCATTCTCTGCCGCAAAACGAAGCTCCAACGGCTATACGACGTACTCATCGAGAG 60


16979R-1.IR_full       61  CATCTGCAGAGGTCTCAGATTGTTCGAACTGAGCCTGATTGAGCATCTCACGGAGTCGGG 120
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
16979R-1.in silico     61  CATCTGCAGAGGTCTCAGATTGTTCGAACTGAGCCTGATTGAGCATCTCACGGAGTCGGG 120


16979R-1.IR_full       121 AAGTGGAAAGCTGCTGGTGCCCGCTAGCTATCACTTCTACCCACAAGAGTTTGGTCACTT 180
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
16979R-1.in silico     121 AAGTGGAAAGCTGCTGGTGCCCGCTAGCTATCACTTCTACCCACAAGAGTTTGGTCACTT 180


16979R-1.IR_full       181 CG<span class="snp"><tt>N</tt></span>TGAGCTGCGCC<span class="snp"><tt>N</tt></span>TATCTGGAAGGTCTGAGTGACGATACACCAAGCATGCTAATG<span class="snp"><tt>A</tt></span>AG 240
                           ||<span class="snp"><tt>&nbsp;</tt></span>|||||||||||<span class="snp"><tt>&nbsp;</tt></span>||||||||||||||||||||||||||||||||||||||||||<span class="snp"><tt>&nbsp;</tt></span>||
16979R-1.in silico     181 CG<span class="snp"><tt>-</tt></span>TGAGCTGCGCC<span class="snp"><tt>-</tt></span>TATCTGGAAGGTCTGAGTGACGATACACCAAGCATGCTAATG<span class="snp"><tt>-</tt></span>AG 240


16979R-1.IR_full       241 ACGCAAGCGCCTGCATCGACAGTTTGCTTTGCCCATCAGTCGTCCTTATTT<span class="snp"><tt>N</tt></span>CCGCAGGG 300
                           |||||||||||||||||||||||||||||||||||||||||||||||||||<span class="snp"><tt>&nbsp;</tt></span>||||||||
16979R-1.in silico     241 ACGCAAGCGCCTGCATCGACAGTTTGCTTTGCCCATCAGTCGTCCTTATTT<span class="snp"><tt>-</tt></span>CCGCAGGG 300


16979R-1.IR_full       301 CCAACCAGATG<span class="snp"><tt>A</tt></span>TTTTCCTAGGTGAAACGGAGGACGCACCATGGACTCCGCTGCTAAATA 360
                           |||||||||||<span class="snp"><tt>&nbsp;</tt></span>||||||||||||||||||||||||||||||||||||||||||||||||
16979R-1.in silico     301 CCAACCAGATG<span class="snp"><tt>C</tt></span>TTTTCCTAGGTGAAACGGAGGACGCACCATGGACTCCGCTGCTAAATA 360


16979R-1.IR_full       361 CCCACATCGGATTACGTCCCAGTGGAGTTGTCGACGGCAAAGAGTACTTAGTAAATGGTA 420
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
16979R-1.in silico     361 CCCACATCGGATTACGTCCCAGTGGAGTTGTCGACGGCAAAGAGTACTTAGTAAATGGTA 420


16979R-1.IR_full       421 ACTACCATTACTATCATTACCTGCAACAGCAGGTGCAGGACAAGGGATGGGGATG<span class="snp"><tt>N</tt></span>GCAT 480
                           |||||||||||||||||||||||||||||||||||||||||||||||||||||||<span class="snp"><tt>&nbsp;</tt></span>||||
16979R-1.in silico     421 ACTACCATTACTATCATTACCTGCAACAGCAGGTGCAGGACAAGGGATGGGGATG<span class="snp"><tt>C</tt></span>GCAT 480


16979R-1.IR_full       481 ATCGCTCGCTGCAGACGATCTGCT 504
                           ||||||||||||||||||||||||
16979R-1.in silico     481 ATCGCTCGCTGCAGACGATCTGCT 504

</PRE>
 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  0  0  0  NM_140522.1  CG16979-RA (CG16979), mRNA 
0   0  1  4  10  NM_001014517.1  CG2368-RL, transcript variant L (psq), mRNA 
0   0  1  4  10  NM_001014520.1  CG2368-RI, transcript variant I (psq), mRNA 
0   0  1  4  10  NM_078962.2  CG2368-RB, transcript variant B (psq), mRNA 
0   0  1  4  10  NM_165790.1  CG2368-RA, transcript variant A (psq), mRNA 
0   0  1  4  10  NM_206086.1  CG2368-RC, transcript variant C (psq), mRNA 
0   0  1  4  10  NM_001014518.1  CG2368-RK, transcript variant K (psq), mRNA 
0   0  1  4  10  NM_176141.1  CG2368-RF, transcript variant F (psq), mRNA 
0   0  1  4  10  NM_176142.1  CG2368-RG, transcript variant G (psq), mRNA 
0   0  1  4  10  NM_165792.1  CG2368-RE, transcript variant E (psq), mRNA 
0   0  1  4  10  NM_001014519.1  CG2368-RJ, transcript variant J (psq), mRNA 
0   0  1  4  10  NM_165791.1  CG2368-RD, transcript variant D (psq), mRNA 
0   0  1  4  10  NM_176143.1  CG2368-RH, transcript variant H (psq), mRNA 
0   0  1  4  9  NM_001043070.1  CG34146-RA (brp), mRNA 
0   0  1  4  3  NM_139584.1  CG14982-RB (CG14982), mRNA 
0   0  1  3  8  NM_133108.2  CG32542-RA (CG32542), mRNA 
0   0  1  3  5  NM_078974.2  CG7776-RA, transcript variant A (E(Pc)), mRNA 
0   0  1  3  5  NM_165836.1  CG7776-RB, transcript variant B (E(Pc)), mRNA 
0   0  1  3  4  NM_058145.3  CG2707-RA (fs(1)Ya), mRNA 
0   0  1  2  5  NM_139837.2  CG8609-RA (MED4), mRNA 
0   0  0  7  3  NM_169386.1  CG17228-RA, transcript variant A (pros), mRNA 
0   0  0  7  3  NM_079593.3  CG17228-RC, transcript variant C (pros), mRNA 
0   0  0  7  3  NM_176459.1  CG17228-RD, transcript variant D (pros), mRNA 
0   0  0  6  2  NM_165281.1  CG10691-RA, transcript variant A (l(2)37Cc), mRNA 
0   0  0  6  2  NM_057259.4  CG10691-RB, transcript variant B (l(2)37Cc), mRNA 
0   0  0  5  16  NM_140402.2  CG17689-RA, transcript variant A (CG17689), mRNA 
0   0  0  5  16  NM_144448.2  CG1915-RC, transcript variant C (sls), mRNA 
0   0  0  5  6  NM_057883.2  CG10117-RA (ttv), mRNA 
0   0  0  5  5  NM_135306.2  CG7144-RA (CG7144), mRNA 
0   0  0  4  12  NM_079937.2  CG1915-RA, transcript variant A (sls), mRNA 
 Pathways (updated: 2024/04/26)
 KEGG Pathway

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