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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 15118R-2 
 Symbol CG15118  Full Name CG15118 
 CG No CG15118  Old CG No CG15118 
 Synonyms anon-EST:fe1H12, CG15118, anon-fast-evolving-1H12 
 Accession No (Link to NCBI) NM_166325.1 
 Inserted Chr. lll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees viable 
 Map Viewer
 Reference
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 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5' 
aaggcctacatggccggaccgAGGAGCGTCGAGGAGATCAAA 
 Primer Seq. 3' 
aatctagaggtaccCAGGTGTTGTTGTCGAAGCCC 
 Predicted Fragment Size 
500 
 IR fragment full Seq 
0001 AGGAGCGTCG AGGAGATCAA NAGCGGAGTA CCCGCTGCAC TGGCACATCT GGCACAACGA 
0061 ACTGGAGCAG CTGCAGGCGG CCATCGACCA GAACGATAAG GAGAAAATCG ATCCCCGCGG 
0121 CCGGACGCCA CTGATGCTGG CTGTGAGATT GGCCAATTTG CCATGCGTTA AATGCCTTCT 
0181 GGCGGCCAAA TGCAATGCGA CCTATGAGCA CGAAGGCTGG TCGATTGTCC AGGAAGCGGT 
0241 CTGCACCGGC GATGTGGACA TACTGACGGC CATCATCGAA GTCCGGGATC TCCAGCGTCA 
0301 TGTCCAGCGG GTTACGCATG TGCCCTAANG CTGCTGCAGC ACCTATTGGA CGCACCAGAT 
0361 TTCTACATCG AGATGAAGTG GGAATTCACC TCCTGGGTGC CCTCTGATGT CGCGTCTCTG 
0421 TCCCAGCGAC ACCTACAAGG TCTACAAGCG GGGAGCCAAC GTCCCGGATA GATACCANCC 
0481 TGCTGGGCTT cGACAACAAC ACCTG 
 in silico PCR Fragment 
0001 AGGAGCGTCG AGGAGATCAA -AGCGGAGTA CCCGCTGCAC TGGCACATCT GGCACAACGA 
0061 ACTGGAGCAG CTGCAGGCGG CCATCGACCA GAACGATAAG GAGAAAATCG ATCCCCGCGG 
0121 CCGGACGCCA CTGATGCTGG CTGTGAGATT GGCCAATTTG CCATGCGTTA AATGCCTTCT 
0181 GGCGGCCAAA TGCAATGCGA CCTATGAGTA CGAAGGCTGG TCGATTGTCC AGGAAGCGGT 
0241 CTGCACCGGC GATGTGGACA TACTGACGGC CATCATCGAA GTCCGGGATC TCCAGCGTCA 
0301 TGTCCAGCGG GTTACGCATG TG-CCTAA-G CTGCTGCAGC ACCTATTGGA CGCACCAGAT 
0361 TTCTACATCG AGATGAAGTG GGAATTCACC TCCTGGGTG- CCTCTGATGT CGCGTCTCTG 
0421 TCCCAGCGAC ACCTACAAGG TCTACAAGCG GGGAGCCAAC GT-CCGGATA GATACCACCC 
0481 TGCTGGGCTT CGACAACAAC ACCTG 
 Assemble Data 

15118R-2.IR_full       1   AGGAGCGTCGAGGAGATCAANAGCGGAGTACCCGCTGCACTGGCACATCTGGCACAACGA 60
                           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
15118R-2.in silico     1   AGGAGCGTCGAGGAGATCAA-AGCGGAGTACCCGCTGCACTGGCACATCTGGCACAACGA 60


15118R-2.IR_full       61  ACTGGAGCAGCTGCAGGCGGCCATCGACCAGAACGATAAGGAGAAAATCGATCCCCGCGG 120
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
15118R-2.in silico     61  ACTGGAGCAGCTGCAGGCGGCCATCGACCAGAACGATAAGGAGAAAATCGATCCCCGCGG 120


15118R-2.IR_full       121 CCGGACGCCACTGATGCTGGCTGTGAGATTGGCCAATTTGCCATGCGTTAAATGCCTTCT 180
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
15118R-2.in silico     121 CCGGACGCCACTGATGCTGGCTGTGAGATTGGCCAATTTGCCATGCGTTAAATGCCTTCT 180


15118R-2.IR_full       181 GGCGGCCAAATGCAATGCGACCTATGAGCACGAAGGCTGGTCGATTGTCCAGGAAGCGGT 240
                           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
15118R-2.in silico     181 GGCGGCCAAATGCAATGCGACCTATGAGTACGAAGGCTGGTCGATTGTCCAGGAAGCGGT 240


15118R-2.IR_full       241 CTGCACCGGCGATGTGGACATACTGACGGCCATCATCGAAGTCCGGGATCTCCAGCGTCA 300
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
15118R-2.in silico     241 CTGCACCGGCGATGTGGACATACTGACGGCCATCATCGAAGTCCGGGATCTCCAGCGTCA 300


15118R-2.IR_full       301 TGTCCAGCGGGTTACGCATGTGCCCTAANGCTGCTGCAGCACCTATTGGACGCACCAGAT 360
                           |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
15118R-2.in silico     301 TGTCCAGCGGGTTACGCATGTG-CCTAA-GCTGCTGCAGCACCTATTGGACGCACCAGAT 360


15118R-2.IR_full       361 TTCTACATCGAGATGAAGTGGGAATTCACCTCCTGGGTGCCCTCTGATGTCGCGTCTCTG 420
                           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
15118R-2.in silico     361 TTCTACATCGAGATGAAGTGGGAATTCACCTCCTGGGTG-CCTCTGATGTCGCGTCTCTG 420


15118R-2.IR_full       421 TCCCAGCGACACCTACAAGGTCTACAAGCGGGGAGCCAACGTCCCGGATAGATACCANCC 480
                           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
15118R-2.in silico     421 TCCCAGCGACACCTACAAGGTCTACAAGCGGGGAGCCAACGT-CCGGATAGATACCACCC 480


15118R-2.IR_full       481 TGCTGGGCTTCGACAACAACACCTG 505
                           |||||||||||||||||||||||||
15118R-2.in silico     481 TGCTGGGCTTCGACAACAACACCTG 505



 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  0  2  8  NM_166326.1  CG15118-RC, transcript variant C (CG15118), mRNA 
100   482  0  2  8  NM_166325.1  CG15118-RA, transcript variant A (CG15118), mRNA 
100   482  0  2  8  NM_137552.2  CG15118-RB, transcript variant B (CG15118), mRNA 
81.95   395  1  3  10  NM_166327.1  CG15118-RD, transcript variant D (CG15118), mRNA 
0.2   1  3  4  8  NM_176254.1  CG5403-RB, transcript variant B (retn), mRNA 
0.2   1  3  4  8  NM_057516.3  CG5403-RA, transcript variant A (retn), mRNA 
0   0  7  2  3  NM_078759.2  CG11020-RA, transcript variant A (nompC), mRNA 
0   0  7  2  3  NM_205912.1  CG11020-RB, transcript variant B (nompC), mRNA 
0   0  4  8  25  NM_001032051.1  CG33715-RD, transcript variant D (Msp-300), mRNA 
0   0  4  7  19  NM_001032053.1  CG33715-RB, transcript variant B (Msp-300), mRNA 
0   0  4  2  4  NM_142213.1  CG14870-RA (CG14870), mRNA 
0   0  3  2  3  NM_168297.1  CG32026-RA (CG32026), mRNA 
0   0  2  7  8  NM_164692.2  CG31638-RA (CG31638), mRNA 
0   0  2  6  8  NM_142053.1  CG14366-RA (CG14366), mRNA 
0   0  2  3  4  NM_142263.2  CG5013-RA (CG5013), mRNA 
0   0  2  3  3  NM_057576.3  CG6407-RA (Wnt5), mRNA 
0   0  2  3  2  NM_169649.1  CG5044-RB, transcript variant B (CG5044), mRNA 
0   0  2  3  2  NM_142196.2  CG5044-RA, transcript variant A (CG5044), mRNA 
0   0  2  2  4  NM_134850.2  CG3210-RA (Drp1), mRNA 
0   0  1  6  2  NM_140200.1  CG6175-RB (CG6175), mRNA 
0   0  1  5  3  NM_132559.1  CG2750-RA (CG2750), mRNA 
0   0  1  4  10  NM_142819.1  CG6954-RA (CG6954), mRNA 
0   0  1  4  5  NM_164852.1  CG3694-RC, transcript variant C (Ggamma30A), mRNA 
0   0  1  4  5  NM_080068.2  CG3694-RA, transcript variant A (Ggamma30A), mRNA 
0   0  1  4  3  NM_001031985.1  CG33720-RA, transcript variant A (Pif1B), mRNA 
0   0  1  4  3  NM_001031986.1  CG33719-RB, transcript variant B (Pif1A), mRNA 
0   0  1  4  3  NM_176694.1  CG3126-RB, transcript variant B (C3G), mRNA 
0   0  1  4  3  NM_132122.2  CG3126-RA, transcript variant A (C3G), mRNA 
0   0  1  4  3  NM_001031987.1  CG33719-RA, transcript variant A (Pif1A), mRNA 
0   0  1  4  2  NM_141239.1  CG17735-RA (CG17735), mRNA 

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