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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 15019R-2 
 Symbol CG15019  Full Name CG15019 
 CG No CG15019  Old CG No CG15019 
 Synonyms CG15019 
 Accession No (Link to NCBI) NM_139642.1 
 Inserted Chr. lll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees lethal 
 Map Viewer
 Reference
[Please submit your publication]
 
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgGCAGAAACAATCGCTCGAGAA 
 Primer Seq. 3'
aatctagaggtaccGGAACATTAACCGTGGTCCAG 
 Predicted Fragment Size
430 
 IR fragment full Seq
0001 GCAGAAACAA TCGCTCGAGA AAGCGTCGTG ATGAAATGAA TAAGATAAAG AAGGCGCGGT 
0061 ACGAAGCCAA GGAGTTAATT CGACTGAAGA AAACTCTGGG ACTCCTAGAT GCCGATGGAA 
0121 ATGAGATCAT GAAGGATATA AGCGATGTGG TCGAAATTAA GACCGCCAAG GAGCTCAAAA 
0181 GGGAGGCCAA ATCCAAGGAG GAGCAGGAAT TGATCTACGA GCACCAGGAG AGTCTGGAGA 
0241 AGGGCGAGAA AGTCAAGGTG ACCAACGAGA ACACGGGCGT GGAGCACATT TTCAACAGCA 
0301 AGACCCTCAA AGATCAGTAC GGCAATTATC CTGCGTGGTT CAAGAAGAAG AAGACCGCCA 
0361 AGCGTCTAAG AAAGAAGCAG CACTCGCAGA AGAAGAACTT CAAACAGGCC TGGACCACGG 
0421 TTAATGTTCC  
 in silico PCR Fragment
0001 GCAGAAACAA TCGCTCGAGA AAGCGTCGTG ATGAAATGAA TAAGATAAAG AAGGCGCGGT 
0061 ACGAAGCCAA GGAGTTAATT CGACTGAAGA AAACTCTGGG ACTCCTAGAT GCCGATGGAA 
0121 ATGAGATCAT GAAGGATATA AGCGATGTGG TCGAAATTAA GACCGCCAAG GAGCTCAAAA 
0181 GGGAGGCCAA ATCCAAGGAG GAGCAGGAAT TGATCTACGA GCACCAGGAG AGTCTGGAGA 
0241 AGGGCGAGAA AGTCAAGGTG ACCAACGAGA ACACGGGCGT GGAGCACATT TTCAACAGCA 
0301 AGACCCTCAA AGATCAGTAC GGCAATTATC CTGCGTGGTT CAAGAAGAAG AAGACCGCCA 
0361 AGCGTCTAAG AAAGAAGCAG CACTCGCAGA AGAAGAACTT CAAACAGGCC TGGACCACGG 
0421 TTAATGTTCC  
 Assemble Data
<PRE>

15019R-2.IR_full       1   GCAGAAACAATCGCTCGAGAAAGCGTCGTGATGAAATGAATAAGATAAAGAAGGCGCGGT 60
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
15019R-2.in silico     1   GCAGAAACAATCGCTCGAGAAAGCGTCGTGATGAAATGAATAAGATAAAGAAGGCGCGGT 60


15019R-2.IR_full       61  ACGAAGCCAAGGAGTTAATTCGACTGAAGAAAACTCTGGGACTCCTAGATGCCGATGGAA 120
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
15019R-2.in silico     61  ACGAAGCCAAGGAGTTAATTCGACTGAAGAAAACTCTGGGACTCCTAGATGCCGATGGAA 120


15019R-2.IR_full       121 ATGAGATCATGAAGGATATAAGCGATGTGGTCGAAATTAAGACCGCCAAGGAGCTCAAAA 180
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
15019R-2.in silico     121 ATGAGATCATGAAGGATATAAGCGATGTGGTCGAAATTAAGACCGCCAAGGAGCTCAAAA 180


15019R-2.IR_full       181 GGGAGGCCAAATCCAAGGAGGAGCAGGAATTGATCTACGAGCACCAGGAGAGTCTGGAGA 240
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
15019R-2.in silico     181 GGGAGGCCAAATCCAAGGAGGAGCAGGAATTGATCTACGAGCACCAGGAGAGTCTGGAGA 240


15019R-2.IR_full       241 AGGGCGAGAAAGTCAAGGTGACCAACGAGAACACGGGCGTGGAGCACATTTTCAACAGCA 300
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
15019R-2.in silico     241 AGGGCGAGAAAGTCAAGGTGACCAACGAGAACACGGGCGTGGAGCACATTTTCAACAGCA 300


15019R-2.IR_full       301 AGACCCTCAAAGATCAGTACGGCAATTATCCTGCGTGGTTCAAGAAGAAGAAGACCGCCA 360
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
15019R-2.in silico     301 AGACCCTCAAAGATCAGTACGGCAATTATCCTGCGTGGTTCAAGAAGAAGAAGACCGCCA 360


15019R-2.IR_full       361 AGCGTCTAAGAAAGAAGCAGCACTCGCAGAAGAAGAACTTCAAACAGGCCTGGACCACGG 420
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
15019R-2.in silico     361 AGCGTCTAAGAAAGAAGCAGCACTCGCAGAAGAAGAACTTCAAACAGGCCTGGACCACGG 420


15019R-2.IR_full       421 TTAATGTTCC 430
                           ||||||||||
15019R-2.in silico     421 TTAATGTTCC 430

</PRE>
 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   412  NM_139642.1  CG15019-RA (CG15019), mRNA 
0   NM_141369.1  CG1153-RA (Osi7), mRNA 
0   NM_139738.1  CG10489-RA (Pole2), mRNA 
0   10  NM_175993.1  CG32987-RA (CG32987), mRNA 
0   NM_134601.1  CG1718-RA (CG1718), mRNA 
0   NM_057485.3  CG9680-RA (Dbp73D), mRNA 
0   NM_165154.1  CG31818-RA (CG31818), mRNA 
0   NM_133034.3  CG6867-RA (CG6867), mRNA 
0   NM_057633.3  CG1768-RA, transcript variant A (dia), mRNA 
0   NM_165341.1  CG1768-RB, transcript variant B (dia), mRNA 
0   NM_165099.1  CG7595-RA, transcript variant A (ck), mRNA 
0   NM_078847.2  CG7595-RB, transcript variant B (ck), mRNA 
0   11  NM_135216.2  CG11070-RA (CG11070), mRNA 
0   NM_167844.1  CG32479-RA (CG32479), mRNA 
0   NM_137836.1  CG12489-RA (Dnr1), mRNA 
0   NM_135386.3  CG13401-RA, transcript variant A (U26), mRNA 
0   NM_206059.1  CG8083-RC, transcript variant C (CG8083), mRNA 
0   NM_205938.1  CG13401-RB, transcript variant B (U26), mRNA 
0   NM_206060.1  CG8083-RB, transcript variant B (CG8083), mRNA 
0   NM_136602.3  CG8083-RA, transcript variant A (CG8083), mRNA 
0   NM_130725.2  CG15239-RA (CG15239), mRNA 
0   NM_142632.2  CG4288-RB, transcript variant B (CG4288), mRNA 
0   NM_169898.1  CG4288-RA, transcript variant A (CG4288), mRNA 
0   NM_169991.1  CG6375-RB, transcript variant B (pit), mRNA 
0   NM_079722.2  CG6375-RA, transcript variant A (pit), mRNA 
0   NM_167319.3  CG32656-RA (CG32656), mRNA 
0   NM_078664.2  CG5870-RA (beta-Spec), mRNA 
0   NM_057334.2  CG6622-RA, transcript variant A (Pkc53E), mRNA 
0   NM_166201.1  CG6622-RB, transcript variant B (Pkc53E), mRNA 
0   NM_141073.1  CG7173-RA (CG7173), mRNA 
 Pathways (updated: 2024/04/26)
 KEGG Pathway

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