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Notice:
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Suspension of shipments during Golden Week Holidays: From 29 April to 13 May, deadline 16 April.
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| NIG-RNAi Strains Detail |
| Request : Click the "Order" button to request for this stock |
discarded
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| Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
| Stock ID |
15006R-1 |
| Symbol |
Cpr64Aa |
Full Name |
Cuticular protein 64Aa |
| CG No |
CG15006 |
Old CG No |
CG15006 |
| Synonyms |
Cpr64Aa, CG15006 |
| Accession No (Link to NCBI) |
NM_139615.2 |
| Inserted Chr. |
lll |
| Insertional Mutation |
lethal |
| Phenotype induced by Act5C-GAL4 at 28 degrees |
viable |
| Map Viewer |
|
Reference
[Please submit your publication]
|
Álvarez-Fernández C, Tamirisa S, Prada F, Chernomoretz A, Podhajcer O, Blanco E, Martín-Blanco E.<br> Identification and functional analysis of healing regulators in Drosophila.<br> PLoS Genet (2015) 11(2) e1004965
[
PubMed ID = 25647511
]
[
RRC reference
]
Minami R, Sato C, Yamahama Y, Kubo H, Hariyama T, Kimura KI.<br> An RNAi Screen for Genes Involved in Nanoscale Protrusion Formation on Corneal Lens in Drosophila melanogaster.<br> Zoolog Sci (2016) 33(6) 583-591
[
PubMed ID = 27927092
]
[
RRC reference
]
|
| Comment |
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| Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
| Primer Seq. 5' |
aaggcctacatggccggaccgAACTGATCCTCGTCCTGAGCG |
| Primer Seq. 3' |
aatctagaggtaccTTGGCCACCAGAGGAGAGGCA |
| Predicted Fragment Size |
430 |
| IR fragment full Seq |
0001 AACTGATCCT CGTCCTGAGC GCCCTGGTGG cGGTGTCCTC CGCCGTTGTG GTCCCTGGTC
0061 CCGGACTGGC ACTGCCCGCC TATCCATCGT ACCCGGCGCT GGCCAAGGTG GCTGCTCCTC
0121 TGGTGGCCAA GGTGGCGGGT CCGGAGCCAT ACGATCCCAA TCCCCAATAC ACCTTCAGCT
0181 ACGATGTTCA TGATGGCTCC ACTGGTGACG TGAAGAGCCA GCAGGAGACC CGCAGCGGAG
0241 ATGTGGTGCA GGGCGCCTNA TTCACTGATT GAGGCCGACG GAACCCGCCG CATTGTGGAG
0301 TACACCGCCG ATCCCGTGCA CGGATTCAAC GCAGTGGTGC GCCGCGAGGG AGCTGTGGTG
0361 AAGGCTGTGG CTCCGGTGGC CAAGGTTCTG GCCCCGCCTC CGCTGCTCCA TGCCTCTCCT
0421 CTGGTGGCCA A |
| in silico PCR Fragment |
0001 AACTGATCCT CGTCCTGAGC GCCCTGGTGG CGGTGTCCTC CGCCGTTGTG GTCCCTGGTC
0061 CCGGACTGGC ACTGCCCGCC TATCCATCGT ACCCGGCGCT GGCCAAGGTG GCTGCTCCTC
0121 TGGTGGCCAA GGTGGCGGGT CCGGAGCCAT ACGATCCCAA TCCCCAATAC ACCTTCAGCT
0181 ACGATGTTCA TGATGGCTCC ACTGGTGACG TGAAGAGCCA GCAGGAGACC CGCAGCGGAG
0241 ATGTGGTGCA GGGCGCCT-A TTCACTGATT GAGGCCGACG GAACCCGCCG CATTGTGGAG
0301 TACACCGCCG ATCCCGTGCA CGGATTCAAC GCAGTGGTGC GCCGCGAGGG AGCTGTGGTG
0361 AAGGCTGTGG CTCCGGTGGC CAAGGTTCTG GCCCCGGCTC CGCTGCTCCA TGCCTCTCCT
0421 CTGGTGGCCA A |
| Assemble Data |
<PRE>
15006R-1.IR_full 1 AACTGATCCTCGTCCTGAGCGCCCTGGTGGCGGTGTCCTCCGCCGTTGTGGTCCCTGGTC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
15006R-1.in silico 1 AACTGATCCTCGTCCTGAGCGCCCTGGTGGCGGTGTCCTCCGCCGTTGTGGTCCCTGGTC 60
15006R-1.IR_full 61 CCGGACTGGCACTGCCCGCCTATCCATCGTACCCGGCGCTGGCCAAGGTGGCTGCTCCTC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
15006R-1.in silico 61 CCGGACTGGCACTGCCCGCCTATCCATCGTACCCGGCGCTGGCCAAGGTGGCTGCTCCTC 120
15006R-1.IR_full 121 TGGTGGCCAAGGTGGCGGGTCCGGAGCCATACGATCCCAATCCCCAATACACCTTCAGCT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
15006R-1.in silico 121 TGGTGGCCAAGGTGGCGGGTCCGGAGCCATACGATCCCAATCCCCAATACACCTTCAGCT 180
15006R-1.IR_full 181 ACGATGTTCATGATGGCTCCACTGGTGACGTGAAGAGCCAGCAGGAGACCCGCAGCGGAG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
15006R-1.in silico 181 ACGATGTTCATGATGGCTCCACTGGTGACGTGAAGAGCCAGCAGGAGACCCGCAGCGGAG 240
15006R-1.IR_full 241 ATGTGGTGCAGGGCGCCT<span class="snp"><tt>N</tt></span>ATTCACTGATTGAGGCCGACGGAACCCGCCGCATTGTGGAG 300
||||||||||||||||||<span class="snp"><tt> </tt></span>|||||||||||||||||||||||||||||||||||||||||
15006R-1.in silico 241 ATGTGGTGCAGGGCGCCT<span class="snp"><tt>-</tt></span>ATTCACTGATTGAGGCCGACGGAACCCGCCGCATTGTGGAG 300
15006R-1.IR_full 301 TACACCGCCGATCCCGTGCACGGATTCAACGCAGTGGTGCGCCGCGAGGGAGCTGTGGTG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
15006R-1.in silico 301 TACACCGCCGATCCCGTGCACGGATTCAACGCAGTGGTGCGCCGCGAGGGAGCTGTGGTG 360
15006R-1.IR_full 361 AAGGCTGTGGCTCCGGTGGCCAAGGTTCTGGCCCCG<span class="snp"><tt>C</tt></span>CTCCGCTGCTCCATGCCTCTCCT 420
||||||||||||||||||||||||||||||||||||<span class="snp"><tt> </tt></span>|||||||||||||||||||||||
15006R-1.in silico 361 AAGGCTGTGGCTCCGGTGGCCAAGGTTCTGGCCCCG<span class="snp"><tt>G</tt></span>CTCCGCTGCTCCATGCCTCTCCT 420
15006R-1.IR_full 421 CTGGTGGCCAA 431
|||||||||||
15006R-1.in silico 421 CTGGTGGCCAA 431
</PRE>
|
| Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
|
| cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
| 100.48 |
414 |
3 |
9 |
14 |
NM_139615.2 |
CG15006-RA (CG15006), mRNA |
| 1.69 |
7 |
14 |
10 |
38 |
NM_141420.2 |
CG2342-RA (Ccp84Ag), mRNA |
| 0 |
0 |
11 |
5 |
6 |
NM_057558.3 |
CG16963-RA (Cry), mRNA |
| 0 |
0 |
8 |
6 |
5 |
NM_164877.1 |
CG31878-RB, transcript variant B (CG31878), mRNA |
| 0 |
0 |
8 |
6 |
5 |
NM_164878.1 |
CG31878-RA, transcript variant A (CG31878), mRNA |
| 0 |
0 |
3 |
4 |
12 |
NM_140864.1 |
CG9290-RA (CG9290), mRNA |
| 0 |
0 |
3 |
4 |
9 |
NM_139618.2 |
CG1259-RB (CG1259), mRNA |
| 0 |
0 |
3 |
3 |
3 |
NM_167522.2 |
CG4429-RB, transcript variant B (Rbp2), mRNA |
| 0 |
0 |
3 |
3 |
3 |
NM_080220.2 |
CG4429-RA, transcript variant A (Rbp2), mRNA |
| 0 |
0 |
3 |
3 |
3 |
NM_206764.1 |
CG4429-RC, transcript variant C (Rbp2), mRNA |
| 0 |
0 |
3 |
2 |
5 |
NM_206398.1 |
CG33255-RA (CG33255), mRNA |
| 0 |
0 |
2 |
11 |
18 |
NM_139617.1 |
CG15008-RA (CG15008), mRNA |
| 0 |
0 |
2 |
10 |
6 |
NM_168797.1 |
CG32213-RA (CG32213), mRNA |
| 0 |
0 |
2 |
10 |
6 |
NM_168796.1 |
CG32208-RA (825-Oak), mRNA |
| 0 |
0 |
2 |
7 |
2 |
NM_139411.1 |
CG1919-RA (CG1919), mRNA |
| 0 |
0 |
2 |
4 |
7 |
NM_079523.1 |
CG2345-RA (Edg84A), mRNA |
| 0 |
0 |
2 |
3 |
8 |
NM_165103.2 |
CG3506-RA (vas), mRNA |
| 0 |
0 |
2 |
3 |
6 |
NM_078768.2 |
CG9554-RB, transcript variant B (eya), mRNA |
| 0 |
0 |
2 |
3 |
6 |
NM_164693.1 |
CG9554-RA, transcript variant A (eya), mRNA |
| 0 |
0 |
2 |
3 |
4 |
NM_130571.1 |
CG14796-RA (CG14796), mRNA |
| 0 |
0 |
2 |
2 |
3 |
NM_164429.1 |
CG31666-RC, transcript variant C (CG31666), mRNA |
| 0 |
0 |
2 |
2 |
3 |
NM_164428.2 |
CG31666-RB, transcript variant B (CG31666), mRNA |
| 0 |
0 |
2 |
2 |
3 |
NM_134766.3 |
CG31666-RA, transcript variant A (CG31666), mRNA |
| 0 |
0 |
2 |
2 |
3 |
NM_164430.2 |
CG31666-RD, transcript variant D (CG31666), mRNA |
| 0 |
0 |
1 |
12 |
7 |
NM_140857.2 |
CG12519-RA (CG12519), mRNA |
| 0 |
0 |
1 |
10 |
35 |
NM_141423.2 |
CG2341-RA (Ccp84Ad), mRNA |
| 0 |
0 |
1 |
9 |
38 |
NM_141426.1 |
CG2360-RA (Ccp84Aa), mRNA |
| 0 |
0 |
1 |
9 |
32 |
NM_141425.1 |
CG1252-RA (Ccp84Ab), mRNA |
| 0 |
0 |
1 |
5 |
4 |
NM_168795.1 |
CG32214-RA (CG32214), mRNA |
| 0 |
0 |
1 |
4 |
27 |
NM_142556.2 |
CG6240-RA (CG6240), mRNA |
|
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Pathways (updated: 2024/04/26)
|
| KEGG Pathway |
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