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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 14967R-2 
 Symbol CG14967  Full Name CG14967 
 CG No CG14967  Old CG No CG14967 
 Synonyms CG14967 
 Accession No (Link to NCBI) NM_139532.1 
 Inserted Chr. lll 
 Insertional Mutation  lethal 
 Phenotype induced by Act5C-GAL4 at 28 degrees lethal 
 Map Viewer
 Reference
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 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5' 
aaggcctacatggccggaccgAGCTACTTCTATTCTGCCTGG 
 Primer Seq. 3' 
aatctagaggtaccCTTCGCCGTGGCATGGATGAA 
 Predicted Fragment Size 
500 
 IR fragment full Seq 
0001 AGCTACTTCT ATTCTGCCTG GCGCTCTTCA TCTTCGTTTA TTGGGTCTTG CCCACgGGNA 
0061 TTAGTTGGTA TTTGGTGAAG AGGTTTCGGG TCAAAGTACG GATCGGTCGC ATTTCGCTGC 
0121 CCTACTTGTC CCTGAAGAAT GTGCACATCA GCAAGAGTGG ATTCTCGGTG CAAATCGAGG 
0181 AGGTGTGTCT GCGCAGCAGT TTCTTCACCA CCGAGGTGAC CAAGCTGCTC TCCATTTATA 
0241 TCCGTGACAT TCGCATCAAC AAAGACATTC ACAGTCGACA GGATGACTCC TACGACCAGG 
0301 ACTCTTACGA ACTCCGGCGG ACTCAGACGT TGGCGGGCAA AGCCTCGGAG GCGAAGGGTG 
0361 TGCCAGACTT CCGGCAAACT AAGGTGCCGG CGAGTATTAT CACCTTTGCC CAATTTATGG 
0421 CAGTGCACGT GAACAACATA TCAGTGGTTC TGATGAACAA TGACTTTGAT CCGGGGTGGT 
0481 TCATCCATgC CACGGCGAAN  
 in silico PCR Fragment 
0001 AGCTACTTCT ATTCTGCCTG GCGCTCTTCA TCTTCGTTTA TTGGGTCTTG CCCACGGGCA 
0061 TTAGTTGGTA TTTGGTGAAG AGGTTTCGGG TCAAAGTACG GATCGGTCGC ATTTCGCTGC 
0121 CCTACTTGTC CCTGAAGAAT GTGCACATCA GCAAGAGTGG ATTCTCGGTG CAAATCGAGG 
0181 AGGTGTGTCT GCGCAGCAGT TTCTTCACCA CCGAGGTGAC CAAGCTGCTC TCCATTTATA 
0241 TCCGTGACAT TCGCATCAAC AAAGACATTC ACAGTCGACA GGATGACTCC TACGACCAGG 
0301 ACTCTTACGA ACTCCGGCGG ACTCAGACGT TGGCGGGCAA AGCCTCGGAG GCGAAGGGTG 
0361 TGCCAGACTT CCGGCAAACT AAGGTGCCGG CGAGTATTAT CACCTTTGCC CAATTTATGG 
0421 CAGTGCACGT GAACAACATA TCAGTGGTTC TGATGAACAA TGACTTTGAT CCGGGGTGGT 
0481 TCATCCATGC CACGGCGAAG  
 Assemble Data 
<PRE>

14967R-2.IR_full       1   AGCTACTTCTATTCTGCCTGGCGCTCTTCATCTTCGTTTATTGGGTCTTGCCCACGGG<span class="snp"><tt>N</tt></span>A 60
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||<span class="snp"><tt>&nbsp;</tt></span>|
14967R-2.in silico     1   AGCTACTTCTATTCTGCCTGGCGCTCTTCATCTTCGTTTATTGGGTCTTGCCCACGGG<span class="snp"><tt>C</tt></span>A 60


14967R-2.IR_full       61  TTAGTTGGTATTTGGTGAAGAGGTTTCGGGTCAAAGTACGGATCGGTCGCATTTCGCTGC 120
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
14967R-2.in silico     61  TTAGTTGGTATTTGGTGAAGAGGTTTCGGGTCAAAGTACGGATCGGTCGCATTTCGCTGC 120


14967R-2.IR_full       121 CCTACTTGTCCCTGAAGAATGTGCACATCAGCAAGAGTGGATTCTCGGTGCAAATCGAGG 180
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
14967R-2.in silico     121 CCTACTTGTCCCTGAAGAATGTGCACATCAGCAAGAGTGGATTCTCGGTGCAAATCGAGG 180


14967R-2.IR_full       181 AGGTGTGTCTGCGCAGCAGTTTCTTCACCACCGAGGTGACCAAGCTGCTCTCCATTTATA 240
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
14967R-2.in silico     181 AGGTGTGTCTGCGCAGCAGTTTCTTCACCACCGAGGTGACCAAGCTGCTCTCCATTTATA 240


14967R-2.IR_full       241 TCCGTGACATTCGCATCAACAAAGACATTCACAGTCGACAGGATGACTCCTACGACCAGG 300
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
14967R-2.in silico     241 TCCGTGACATTCGCATCAACAAAGACATTCACAGTCGACAGGATGACTCCTACGACCAGG 300


14967R-2.IR_full       301 ACTCTTACGAACTCCGGCGGACTCAGACGTTGGCGGGCAAAGCCTCGGAGGCGAAGGGTG 360
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
14967R-2.in silico     301 ACTCTTACGAACTCCGGCGGACTCAGACGTTGGCGGGCAAAGCCTCGGAGGCGAAGGGTG 360


14967R-2.IR_full       361 TGCCAGACTTCCGGCAAACTAAGGTGCCGGCGAGTATTATCACCTTTGCCCAATTTATGG 420
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
14967R-2.in silico     361 TGCCAGACTTCCGGCAAACTAAGGTGCCGGCGAGTATTATCACCTTTGCCCAATTTATGG 420


14967R-2.IR_full       421 CAGTGCACGTGAACAACATATCAGTGGTTCTGATGAACAATGACTTTGATCCGGGGTGGT 480
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
14967R-2.in silico     421 CAGTGCACGTGAACAACATATCAGTGGTTCTGATGAACAATGACTTTGATCCGGGGTGGT 480


14967R-2.IR_full       481 TCATCCATGCCACGGCGAA<span class="snp"><tt>N</tt></span> 500
                           |||||||||||||||||||<span class="snp"><tt>&nbsp;</tt></span>
14967R-2.in silico     481 TCATCCATGCCACGGCGAA<span class="snp"><tt>G</tt></span> 500

</PRE>
 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  0  0  1  NM_139532.1  CG14967-RA (CG14967), mRNA 
0.2   1  2  2  3  NM_136134.4  CG10186-RA, transcript variant A (CG10186), mRNA 
0.2   1  2  2  3  NM_165306.1  CG10186-RC, transcript variant C (CG10186), mRNA 
0   0  4  4  3  NM_134551.4  CG32506-RA (CG32506), mRNA 
0   0  4  3  2  NM_167705.1  CG1695-RB, transcript variant B (CG1695), mRNA 
0   0  4  3  2  NM_134550.1  CG1695-RA, transcript variant A (CG1695), mRNA 
0   0  3  2  2  NM_134994.1  CG15435-RA (CG15435), mRNA 
0   0  2  3  3  NM_142144.2  CG3731-RB, transcript variant B (CG3731), mRNA 
0   0  2  3  3  NM_169607.1  CG3731-RA, transcript variant A (CG3731), mRNA 
0   0  2  2  5  NM_079794.2  CG5490-RB, transcript variant B (Tl), mRNA 
0   0  2  2  5  NM_170287.1  CG5490-RA, transcript variant A (Tl), mRNA 
0   0  1  5  2  NM_078686.2  CG12230-RA, transcript variant A (car), mRNA 
0   0  1  5  2  NM_167664.1  CG12230-RB, transcript variant B (car), mRNA 
0   0  1  4  2  NM_140688.2  CG7728-RA (CG7728), mRNA 
0   0  1  2  4  NM_141717.1  CG12812-RA (Fancl), mRNA 
0   0  1  2  4  NM_164987.1  CG14945-RB, transcript variant B (CG14945), mRNA 
0   0  1  2  3  NM_135697.1  CG14945-RA, transcript variant A (CG14945), mRNA 
0   0  1  2  3  NM_079449.2  CG7978-RA (Ac76E), mRNA 
0   0  1  2  3  NM_168811.1  CG32209-RB (CG32209), mRNA 
0   0  1  2  3  NM_001042799.1  CG10966-RB, transcript variant B (rdgA), mRNA 
0   0  1  2  3  NM_078537.2  CG10966-RA, transcript variant A (rdgA), mRNA 
0   0  1  2  2  NM_132459.2  CG1453-RA, transcript variant A (Klp10A), mRNA 
0   0  1  2  2  NM_167270.1  CG1453-RE, transcript variant E (Klp10A), mRNA 
0   0  1  2  2  NM_167269.1  CG1453-RD, transcript variant D (Klp10A), mRNA 
0   0  1  2  2  NM_167268.1  CG1453-RC, transcript variant C (Klp10A), mRNA 
0   0  1  2  2  NM_167267.1  CG1453-RB, transcript variant B (Klp10A), mRNA 
0   0  1  2  2  NM_141167.1  CG11137-RA (CG11137), mRNA 
0   0  1  2  2  NM_136151.1  CG10366-RA (CG10366), mRNA 
0   0  0  5  4  NM_141929.2  CG10096-RA, transcript variant A (CG10096), mRNA 
0   0  0  5  4  NM_169464.2  CG10097-RA, transcript variant A (CG10097), mRNA 
 Pathways (updated: 2024/04/26)
 KEGG Pathway

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