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| NIG-RNAi Strains Detail |
| Request : Click the "Order" button to request for this stock |
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| Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
| Stock ID |
14884R-1 |
| Symbol |
CSN5 |
Full Name |
COP9 complex homolog subunit 5 |
| CG No |
CG14884 |
Old CG No |
CG14884 |
| Synonyms |
jab1/csn5, csn5, Dch5, quo, JAB1/CSN5, Csn5, Jab1, l(3)L4032, DCH5, BcDNA.LD14392, dch5, JadBp, l(3)89Cf, l(3)M203, CH5, CG14884, BcDNA:LD14392, CSN5 |
| Accession No (Link to NCBI) |
NM_058094.3 |
| Inserted Chr. |
lll |
| Insertional Mutation |
|
| Phenotype induced by Act5C-GAL4 at 28 degrees |
lethal |
| Map Viewer |
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Reference
[Please submit your publication]
|
Fernández-Espartero CH, Rizzo A, Fulford AD, Falo-Sanjuan J, Goutte-Gattat D, Ribeiro PS.
Prp8 regulates oncogene-induced hyperplastic growth in Drosophila.
Development (2018) 145(22)
[
PubMed ID = 30333215
]
[
RRC reference
]
Cho Y, Lai CM, Lin KY, Hsu HJ.
A Targeted RNAi Screen Reveals Drosophila Female-Sterile Genes That Control the Size of Germline Stem Cell Niche During Development.
G3 (Bethesda) (2018) 8(7) 2345-2354
[
PubMed ID = 29764959
]
[
RRC reference
]
Zhang J, Liu M, Su Y, Du J, Zhu AJ.
A targeted in vivo RNAi screen reveals deubiquitinases as new regulators of Notch signaling.
G3 (Bethesda) (2012) 2(12) 1563-75
[
PubMed ID = 23275879
]
[
RRC reference
]
|
| Comment |
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| Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
| Primer Seq. 5' |
aaggcctacatggccggaccgATGGACTCCGACGCCGCACAA |
| Primer Seq. 3' |
aatctagaggtaccACCACAATGGCCACGAATGGC |
| Predicted Fragment Size |
500 |
| IR fragment full Seq |
0001 ATGGACTCCG ACGCCGCACA AAAGACCTGG GAGCTGGAGA ACAACATCCA GACGTTGCCC
0061 AGTTGTGACG AGATCTTTCG CTACGACGCC GAACAGCAGC GGCAGATCAT CGATGCGAAG
0121 CCCTGGGAGA AAGATCCCCA CTTCTTTAAG GACATTAAGA TCTCGGCTCT GGCGCTCCTA
0181 AAGATGGTGA TGCACGCTCG CTCTGGCGGT ACTTTGGAGG TGATGGGTCT AATGCTTGGC
0241 AAGGTAGAGG ACAACACAAT GATTGTCATG GATGCATTTG CACTGCCAGT GGAGGGCACT
0301 GAAACCCGCG TCAATGCCCA GGCACAAGCG TACGAGTACA TGACCGCCTA CATGGAAGCG
0361 GCCAAAGAGG TGGGACGCAT GGAACACGCC GTGGGCTGGT ATCACAGCCA TCCCGGTTAC
0421 GGTTGCTGGT TGTCCGGCAT CGATGTGTCC ACCCAGATGC TCAACCAGAC ATACCAGGAG
0481 CCATTCGTGG CCATTGTGGT |
| in silico PCR Fragment |
0001 ATGGACTCCG ACGCCGCACA AAAGACCTGG GAGCTGGAGA ACAACATCCA GACGTTGCCC
0061 AGTTGTGACG AGATCTTTCG CTACGACGCC GAACAGCAGC GGCAGATCAT CGATGCGAAG
0121 CCCTGGGAGA AAGATCCCCA CTTCTTTAAG GACATTAAGA TCTCGGCTCT GGCGCTCCTA
0181 AAGATGGTGA TGCACGCTCG CTCTGGCGGT ACTTTGGAGG TGATGGGTCT AATGCTTGGC
0241 AAGGTAGAGG ACAACACAAT GATTGTCATG GATGCATTTG CACTGCCAGT GGAGGGCACT
0301 GAAACCCGCG TCAATGCCCA GGCACAAGCG TACGAGTACA TGACCGCCTA CATGGAAGCG
0361 GCCAAAGAGG TGGGACGCAT GGAACACGCC GTGGGCTGGT ATCACAGCCA TCCCGGTTAC
0421 GGTTGCTGGT TGTCCGGCAT CGATGTGTCC ACCCAGATGC TCAACCAGAC ATACCAGGAG
0481 CCATTCGTGG CCATTGTGGT |
| Assemble Data |
14884R-1.IR_full 1 ATGGACTCCGACGCCGCACAAAAGACCTGGGAGCTGGAGAACAACATCCAGACGTTGCCC 60
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14884R-1.in silico 1 ATGGACTCCGACGCCGCACAAAAGACCTGGGAGCTGGAGAACAACATCCAGACGTTGCCC 60
14884R-1.IR_full 61 AGTTGTGACGAGATCTTTCGCTACGACGCCGAACAGCAGCGGCAGATCATCGATGCGAAG 120
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14884R-1.in silico 61 AGTTGTGACGAGATCTTTCGCTACGACGCCGAACAGCAGCGGCAGATCATCGATGCGAAG 120
14884R-1.IR_full 121 CCCTGGGAGAAAGATCCCCACTTCTTTAAGGACATTAAGATCTCGGCTCTGGCGCTCCTA 180
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14884R-1.in silico 121 CCCTGGGAGAAAGATCCCCACTTCTTTAAGGACATTAAGATCTCGGCTCTGGCGCTCCTA 180
14884R-1.IR_full 181 AAGATGGTGATGCACGCTCGCTCTGGCGGTACTTTGGAGGTGATGGGTCTAATGCTTGGC 240
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14884R-1.in silico 181 AAGATGGTGATGCACGCTCGCTCTGGCGGTACTTTGGAGGTGATGGGTCTAATGCTTGGC 240
14884R-1.IR_full 241 AAGGTAGAGGACAACACAATGATTGTCATGGATGCATTTGCACTGCCAGTGGAGGGCACT 300
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14884R-1.in silico 241 AAGGTAGAGGACAACACAATGATTGTCATGGATGCATTTGCACTGCCAGTGGAGGGCACT 300
14884R-1.IR_full 301 GAAACCCGCGTCAATGCCCAGGCACAAGCGTACGAGTACATGACCGCCTACATGGAAGCG 360
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14884R-1.in silico 301 GAAACCCGCGTCAATGCCCAGGCACAAGCGTACGAGTACATGACCGCCTACATGGAAGCG 360
14884R-1.IR_full 361 GCCAAAGAGGTGGGACGCATGGAACACGCCGTGGGCTGGTATCACAGCCATCCCGGTTAC 420
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14884R-1.in silico 361 GCCAAAGAGGTGGGACGCATGGAACACGCCGTGGGCTGGTATCACAGCCATCCCGGTTAC 420
14884R-1.IR_full 421 GGTTGCTGGTTGTCCGGCATCGATGTGTCCACCCAGATGCTCAACCAGACATACCAGGAG 480
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14884R-1.in silico 421 GGTTGCTGGTTGTCCGGCATCGATGTGTCCACCCAGATGCTCAACCAGACATACCAGGAG 480
14884R-1.IR_full 481 CCATTCGTGGCCATTGTGGT 500
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14884R-1.in silico 481 CCATTCGTGGCCATTGTGGT 500
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| Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
|
| cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
| 100 |
482 |
0 |
0 |
0 |
NM_058094.3 |
CG14884-RA (CSN5), mRNA |
| 0.41 |
2 |
3 |
4 |
3 |
NM_132608.2 |
CG32649-RA (CG32649), mRNA |
| 0 |
0 |
2 |
8 |
28 |
NM_135061.2 |
CG18174-RA (Rpn11), mRNA |
| 0 |
0 |
2 |
4 |
2 |
NM_135201.1 |
CG9595-RA (osm-6), mRNA |
| 0 |
0 |
2 |
3 |
7 |
NM_079702.2 |
CG3637-RA (Cortactin), mRNA |
| 0 |
0 |
2 |
3 |
5 |
NM_130665.2 |
CG2680-RA (CG2680), mRNA |
| 0 |
0 |
2 |
3 |
4 |
NM_078536.3 |
CG12154-RA, transcript variant A (oc), mRNA |
| 0 |
0 |
2 |
3 |
4 |
NM_001014727.1 |
CG12154-RB, transcript variant B (oc), mRNA |
| 0 |
0 |
2 |
3 |
3 |
NM_001015186.1 |
CG40177-PA.3 (CG40177), mRNA |
| 0 |
0 |
2 |
3 |
2 |
NM_165289.1 |
CG17549-RC, transcript variant C (CG17549), mRNA |
| 0 |
0 |
2 |
3 |
2 |
NM_165288.1 |
CG17549-RB, transcript variant B (CG17549), mRNA |
| 0 |
0 |
2 |
2 |
3 |
NM_168906.1 |
CG5081-RB, transcript variant B (Syx7), mRNA |
| 0 |
0 |
2 |
2 |
3 |
NM_168905.1 |
CG5081-RA, transcript variant A (Syx7), mRNA |
| 0 |
0 |
1 |
5 |
3 |
NM_137761.2 |
CG10307-RA (CG10307), mRNA |
| 0 |
0 |
1 |
4 |
6 |
NM_143149.1 |
CG5071-RB, transcript variant B (CG5071), mRNA |
| 0 |
0 |
1 |
4 |
6 |
NM_170232.1 |
CG5071-RA, transcript variant A (CG5071), mRNA |
| 0 |
0 |
1 |
4 |
4 |
NM_142696.1 |
CG7000-RA (CG7000), mRNA |
| 0 |
0 |
1 |
3 |
3 |
NM_131991.2 |
CG3252-RA (CG3252), mRNA |
| 0 |
0 |
1 |
3 |
3 |
NM_141774.2 |
CG4596-RA (CG4596), mRNA |
| 0 |
0 |
1 |
3 |
3 |
NM_139943.1 |
CG7201-RA (CG7201), mRNA |
| 0 |
0 |
1 |
3 |
2 |
NM_057515.2 |
CG6518-RA (inaC), mRNA |
| 0 |
0 |
1 |
2 |
4 |
NM_132943.1 |
CG13004-RA (CG13004), mRNA |
| 0 |
0 |
1 |
2 |
2 |
NM_057686.3 |
CG4254-RA (tsr), mRNA |
| 0 |
0 |
1 |
2 |
2 |
NM_139386.2 |
CG7974-RA (CG7974), mRNA |
| 0 |
0 |
0 |
5 |
14 |
NM_001032051.1 |
CG33715-RD, transcript variant D (Msp-300), mRNA |
| 0 |
0 |
0 |
5 |
11 |
NM_001032053.1 |
CG33715-RB, transcript variant B (Msp-300), mRNA |
| 0 |
0 |
0 |
5 |
5 |
NM_139513.2 |
CG7740-RC, transcript variant C (prominin-like), mRNA |
| 0 |
0 |
0 |
5 |
5 |
NM_167987.1 |
CG7740-RB, transcript variant B (prominin-like), mRNA |
| 0 |
0 |
0 |
5 |
5 |
NM_167986.1 |
CG7740-RA, transcript variant A (prominin-like), mRNA |
| 0 |
0 |
0 |
5 |
2 |
NM_170411.1 |
CG2310-RB, transcript variant B (CG2310), mRNA |
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