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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 14637R-3 
 Symbol abs  Full Name abstrakt 
 CG No CG14637  Old CG No CG14637 
 Synonyms ABS, DmRH23, l(3)06863, l(3)06862, l(3)04505, l(3)00620, anon-WO0118547.315, CG14637, abs 
 Accession No (Link to NCBI) NM_079496.2 
 Inserted Chr. lll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees lethal 
 Map Viewer
 Reference
[Please submit your publication] 		 
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5' 
aaggcctacatggccggaccgAGGAAGGCGACCTGGACAACG 
 Primer Seq. 3' 
aatctagaggtaccTTCCCGGAAGCTGCGAATTGG 
 Predicted Fragment Size 
500 
 IR fragment full Seq 
0001 AGGAAGGCGA CCTGGACAAC GAGGACTACG TGCCATACGT ACCGGTGAAG GAGCGGAAGA 
0061 AGCAGCACAT GATAAAGCTG GGCAGGATCG TGCAACTGGT TTCGGAAACG GCCCAGCCCA 
0121 AGTCGTCAAG CGAGAATGAG AATGAAGACG ACTCGCAGGG TGCGCACGAT GTCGAGACCT 
0181 GGGGACGCAA GTACAACATT AGTCTGCTGG ACCAGCACAC AGAACTGAAG AAAATTGCCG 
0241 AGGCCAAAAA GTTGAGTGCC GTCGAAAAGC AGCTGCGAGA GGAGGAAAAG ATTATGGAGA 
0301 GCATTGCTCA GCAGAAGGCC CTTATGGGTG TGGCAGAGTT GGCGAAGGGG ATTCAGTACG 
0361 AGCAGCCTAT TAAAACAGCT TGGAAACCGC CGCGTTACAT TCGGGAAATG TCGGAGGAAG 
0421 AGCGCGAGGC CGTTCGCCAC GAGTTGAGGA TCCTAGTGGA GGGAGAAACC CCCAGCCCGC 
0481 CAATTCGCAG CTTCCGGGAA  
 in silico PCR Fragment 
0001 AGGAAGGCGA CCTGGACAAC GAGGACTACG TGCCATACGT ACCGGTGAAG GAGCGGAAGA 
0061 AGCAGCACAT GATAAAGCTG GGCAGGATCG TGCAACTGGT TTCGGAAACG GCCCAGCCCA 
0121 AGTCGTCAAG CGAGAATGAG AATGAAGACG ACTCGCAGGG TGCGCACGAT GTCGAGACCT 
0181 GGGGACGCAA GTACAACATT AGTCTGCTGG ACCAGCACAC AGAACTGAAG AAAATTGCCG 
0241 AGGCCAAAAA GTTGAGTGCC GTCGAAAAGC AGCTGCGAGA GGAGGAAAAG ATTATGGAGA 
0301 GCATTGCTCA GCAGAAGGCC CTTATGGGTG TGGCAGAGTT GGCGAAGGGG ATTCAGTACG 
0361 AGCAGCCTAT TAAAACAGCT TGGAAACCGC CGCGTTACAT TCGGGAAATG TCGGAGGAAG 
0421 AGCGCGAGGC CGTTCGCCAC GAGTTGAGGA TCCTAGTGGA GGGAGAAACC CCCAGCCCGC 
0481 CAATTCGCAG CTTCCGGGAA  
 Assemble Data 
<PRE>

14637R-3.IR_full       1   AGGAAGGCGACCTGGACAACGAGGACTACGTGCCATACGTACCGGTGAAGGAGCGGAAGA 60
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
14637R-3.in silico     1   AGGAAGGCGACCTGGACAACGAGGACTACGTGCCATACGTACCGGTGAAGGAGCGGAAGA 60


14637R-3.IR_full       61  AGCAGCACATGATAAAGCTGGGCAGGATCGTGCAACTGGTTTCGGAAACGGCCCAGCCCA 120
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
14637R-3.in silico     61  AGCAGCACATGATAAAGCTGGGCAGGATCGTGCAACTGGTTTCGGAAACGGCCCAGCCCA 120


14637R-3.IR_full       121 AGTCGTCAAGCGAGAATGAGAATGAAGACGACTCGCAGGGTGCGCACGATGTCGAGACCT 180
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
14637R-3.in silico     121 AGTCGTCAAGCGAGAATGAGAATGAAGACGACTCGCAGGGTGCGCACGATGTCGAGACCT 180


14637R-3.IR_full       181 GGGGACGCAAGTACAACATTAGTCTGCTGGACCAGCACACAGAACTGAAGAAAATTGCCG 240
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
14637R-3.in silico     181 GGGGACGCAAGTACAACATTAGTCTGCTGGACCAGCACACAGAACTGAAGAAAATTGCCG 240


14637R-3.IR_full       241 AGGCCAAAAAGTTGAGTGCCGTCGAAAAGCAGCTGCGAGAGGAGGAAAAGATTATGGAGA 300
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
14637R-3.in silico     241 AGGCCAAAAAGTTGAGTGCCGTCGAAAAGCAGCTGCGAGAGGAGGAAAAGATTATGGAGA 300


14637R-3.IR_full       301 GCATTGCTCAGCAGAAGGCCCTTATGGGTGTGGCAGAGTTGGCGAAGGGGATTCAGTACG 360
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
14637R-3.in silico     301 GCATTGCTCAGCAGAAGGCCCTTATGGGTGTGGCAGAGTTGGCGAAGGGGATTCAGTACG 360


14637R-3.IR_full       361 AGCAGCCTATTAAAACAGCTTGGAAACCGCCGCGTTACATTCGGGAAATGTCGGAGGAAG 420
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
14637R-3.in silico     361 AGCAGCCTATTAAAACAGCTTGGAAACCGCCGCGTTACATTCGGGAAATGTCGGAGGAAG 420


14637R-3.IR_full       421 AGCGCGAGGCCGTTCGCCACGAGTTGAGGATCCTAGTGGAGGGAGAAACCCCCAGCCCGC 480
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
14637R-3.in silico     421 AGCGCGAGGCCGTTCGCCACGAGTTGAGGATCCTAGTGGAGGGAGAAACCCCCAGCCCGC 480


14637R-3.IR_full       481 CAATTCGCAGCTTCCGGGAA 500
                           ||||||||||||||||||||
14637R-3.in silico     481 CAATTCGCAGCTTCCGGGAA 500

</PRE>
 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  0  0  1  NM_079496.2  CG14637-RA (abs), mRNA 
0   0  3  2  2  NM_139365.2  CG18330-RA (Cct2), mRNA 
0   0  2  6  2  NM_167889.1  CG12090-RA, transcript variant A (CG12090), mRNA 
0   0  2  6  2  NM_167888.1  CG12090-RC, transcript variant C (CG12090), mRNA 
0   0  2  6  2  NM_139361.1  CG12090-RB, transcript variant B (CG12090), mRNA 
0   0  2  3  8  NM_057676.3  CG11312-RA (insc), mRNA 
0   0  2  3  4  NM_176718.1  CG9113-RD, transcript variant D (AP-1gamma), mRNA 
0   0  2  3  4  NM_167178.2  CG9113-RB, transcript variant B (AP-1gamma), mRNA 
0   0  2  3  4  NM_176717.1  CG9113-RC, transcript variant C (AP-1gamma), mRNA 
0   0  2  3  4  NM_132299.3  CG9113-RA, transcript variant A (AP-1gamma), mRNA 
0   0  2  3  4  NM_206671.1  CG9113-RE, transcript variant E (AP-1gamma), mRNA 
0   0  2  3  4  NM_132133.1  CG3044-RA (CG3044), mRNA 
0   0  1  4  4  NM_132871.2  CG8939-RA (CG8939), mRNA 
0   0  1  3  8  NM_132959.2  CG8949-RA (CG8949), mRNA 
0   0  1  3  5  NM_137493.2  CG30116-RC, transcript variant C (CG30116), mRNA 
0   0  1  3  5  NM_137494.1  CG30116-RB, transcript variant B (CG30116), mRNA 
0   0  1  3  5  NM_166291.1  CG30116-RD, transcript variant D (CG30116), mRNA 
0   0  1  3  5  NM_166292.1  CG30116-RA, transcript variant A (CG30116), mRNA 
0   0  1  3  5  NM_138040.2  CG3231-RA (CG3231), mRNA 
0   0  1  3  2  NM_165328.1  CG10947-RB, transcript variant B (CG10947), mRNA 
0   0  1  3  2  NM_136187.2  CG10947-RA, transcript variant A (CG10947), mRNA 
0   0  1  3  2  NM_165329.1  CG10947-RC, transcript variant C (CG10947), mRNA 
0   0  1  2  2  NM_140669.2  CG9715-RA (CG9715), mRNA 
0   0  1  2  2  NM_133134.2  CG12359-RA (Ulp1), mRNA 
0   0  0  6  7  NM_080531.2  CG5481-RA (lea), mRNA 
0   0  0  5  9  NM_168512.1  CG32113-RA (CG32113), mRNA 
0   0  0  5  5  NM_140709.1  CG13724-RA (CG13724), mRNA 
0   0  0  5  2  NM_165543.1  CG2092-RB, transcript variant B (scra), mRNA 
0   0  0  5  2  NM_165544.1  CG2092-RA, transcript variant A (scra), mRNA 
0   0  0  5  2  NM_001014502.1  CG2092-RC, transcript variant C (scra), mRNA 
 Pathways (updated: 2024/04/26)
 KEGG Pathway

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