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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 13829R-2 
 Symbol CG13829  Full Name CG13829 
 CG No CG13829  Old CG No CG13829 
 Synonyms CG13829 
 Accession No (Link to NCBI) NM_142872.1 
 Inserted Chr. ll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees lethal 
 Map Viewer
 Reference
[Please submit your publication] 		Umemori M, Habara O, Iwata T, Maeda K, Nishinoue K, Okabe A, Takemura M, Takahashi K, Saigo K, Ueda R, Adachi-Yamada T.<br> RNAi-mediated knockdown showing impaired cell survival in Drosophila wing imaginal disc.<br> Gene Regul Syst Bio (2009) 3 11-20 [ PubMed ID = 19838331 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5' 
aaggcctacatggccggaccgTCCACAGCGGATCTGAACAAT 
 Primer Seq. 3' 
aatctagaggtaccACTGCTGCATGAACTGCAACT 
 Predicted Fragment Size 
500 
 IR fragment full Seq 
0001 TCCACAGCGG ATCTGAACAA TGCTGAACTT GTTTCCAATG TCAAGAAAAG GCGAGCCGAA 
0061 TATCTCGTCG AACGAATGCA GCGACTGCTG CTCTTTCTGA CCGTCTTCCT TCTGTTTCCC 
0121 GTGGTGATCT TCGTCATCTT CAAGTTCTTG ATTATGGAGC CGCTCTACGG AAACAGCGAT 
0181 GACAATGTGG GCATTGGATC CGGCGTAGCC ACGGTAATTG TGATGCATGT CCTGGTCACG 
0241 GGCTATATCC TGCGCCTGAT CTTCCTTCAA GAGATTTCGA GCATGGAGAA GCTGGAGTGG 
0301 GAAGTTCTGA TGCCACCAAA CACCCAAATT CATGGATCCG TGTTCATTGT CCTGCTGCTG 
0361 ATGTCCTACT GTTCCCTAAT AATTGGCTTT CCCATAGCCA CCTTTTTTGC CCTGAAATTT 
0421 GTGGTGCTCA AGAGCTATGC CCATATCAAT GCCGATATTA TTTCGACCAT TTGCACCGTA 
0481 GTTGCAGTTC ATGCAGCAGT  
 in silico PCR Fragment 
0001 TCCACAGCGG ATCTGAACAA TGCTGAACTT GTTTCCAATG TCAAGAAAAG GCGAGCCGAA 
0061 TATCTCGTCG AACGAATGCA GCGACTGCTG CTCTTTCTGA CCGTCTTCCT TCTGTTTCCC 
0121 GTGGTGATCT TCGTCATCTT CAAGTTCTTG ATTATGGAGC CGCTCTACGG AAACAGCGAT 
0181 GACAATGTGG GCATTGGATC CGGCGTAGCC ACGGTAATTG TGATGCATGT CCTGGTCACG 
0241 GGCTATATCC TGCGCCTGAT CTTCCTTCAA GAGATTTCGA GCATGGAGAA GCTGGAGTGG 
0301 GAAGTTCTGA TGCCACCAAA CACCCAAATT CATGGATCCG TGTTCATTGT CCTGCTGCTG 
0361 ATGTCCTACT GTTCCCTAAT AATTGGCTTT CCCATAGCCA CCTTTTTTGC CCTGAAATTT 
0421 GTGGTGCTCA AGAGCTATGC CCATATCAAT GCCGATATTA TTTCGACCAT TTGCACCGTA 
0481 GTTGCAGTTC ATGCAGCAGT  
 Assemble Data 
<PRE>

13829R-2.IR_full       1   TCCACAGCGGATCTGAACAATGCTGAACTTGTTTCCAATGTCAAGAAAAGGCGAGCCGAA 60
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
13829R-2.in silico     1   TCCACAGCGGATCTGAACAATGCTGAACTTGTTTCCAATGTCAAGAAAAGGCGAGCCGAA 60


13829R-2.IR_full       61  TATCTCGTCGAACGAATGCAGCGACTGCTGCTCTTTCTGACCGTCTTCCTTCTGTTTCCC 120
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
13829R-2.in silico     61  TATCTCGTCGAACGAATGCAGCGACTGCTGCTCTTTCTGACCGTCTTCCTTCTGTTTCCC 120


13829R-2.IR_full       121 GTGGTGATCTTCGTCATCTTCAAGTTCTTGATTATGGAGCCGCTCTACGGAAACAGCGAT 180
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
13829R-2.in silico     121 GTGGTGATCTTCGTCATCTTCAAGTTCTTGATTATGGAGCCGCTCTACGGAAACAGCGAT 180


13829R-2.IR_full       181 GACAATGTGGGCATTGGATCCGGCGTAGCCACGGTAATTGTGATGCATGTCCTGGTCACG 240
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
13829R-2.in silico     181 GACAATGTGGGCATTGGATCCGGCGTAGCCACGGTAATTGTGATGCATGTCCTGGTCACG 240


13829R-2.IR_full       241 GGCTATATCCTGCGCCTGATCTTCCTTCAAGAGATTTCGAGCATGGAGAAGCTGGAGTGG 300
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
13829R-2.in silico     241 GGCTATATCCTGCGCCTGATCTTCCTTCAAGAGATTTCGAGCATGGAGAAGCTGGAGTGG 300


13829R-2.IR_full       301 GAAGTTCTGATGCCACCAAACACCCAAATTCATGGATCCGTGTTCATTGTCCTGCTGCTG 360
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
13829R-2.in silico     301 GAAGTTCTGATGCCACCAAACACCCAAATTCATGGATCCGTGTTCATTGTCCTGCTGCTG 360


13829R-2.IR_full       361 ATGTCCTACTGTTCCCTAATAATTGGCTTTCCCATAGCCACCTTTTTTGCCCTGAAATTT 420
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
13829R-2.in silico     361 ATGTCCTACTGTTCCCTAATAATTGGCTTTCCCATAGCCACCTTTTTTGCCCTGAAATTT 420


13829R-2.IR_full       421 GTGGTGCTCAAGAGCTATGCCCATATCAATGCCGATATTATTTCGACCATTTGCACCGTA 480
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
13829R-2.in silico     421 GTGGTGCTCAAGAGCTATGCCCATATCAATGCCGATATTATTTCGACCATTTGCACCGTA 480


13829R-2.IR_full       481 GTTGCAGTTCATGCAGCAGT 500
                           ||||||||||||||||||||
13829R-2.in silico     481 GTTGCAGTTCATGCAGCAGT 500

</PRE>
 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  0  0  0  NM_142872.1  CG13829-RA (CG13829), mRNA 
0   0  5  3  5  NM_135755.1  CG9932-RA (CG9932), mRNA 
0   0  2  5  5  NM_166641.1  CG2987-RB, transcript variant B (alpha-catenin-related), mRNA 
0   0  2  5  5  NM_143816.2  CG2987-RA, transcript variant A (alpha-catenin-related), mRNA 
0   0  2  2  4  NM_130717.3  CG32782-RC, transcript variant C (tlk), mRNA 
0   0  2  2  4  NM_206620.4  CG32782-RD, transcript variant D (tlk), mRNA 
0   0  2  2  4  NM_165270.1  CG31792-RA (CG31792), mRNA 
0   0  1  4  7  NM_001042794.1  CG2621-RL, transcript variant L (sgg), mRNA 
0   0  1  3  7  NM_135057.1  CG9121-RA (CG9121), mRNA 
0   0  1  2  9  NM_080142.2  CG1925-RA (mus205), mRNA 
0   0  1  2  3  NM_001031964.1  CG13702-RC, transcript variant C (AlCR2), mRNA 
0   0  1  2  2  NM_141028.1  CG12977-RA (CG12977), mRNA 
0   0  1  2  2  NM_078577.2  CG4147-RB, transcript variant B (Hsc70-3), mRNA 
0   0  1  2  2  NM_167308.1  CG4147-RD, transcript variant D (Hsc70-3), mRNA 
0   0  1  2  2  NM_167306.1  CG4147-RA, transcript variant A (Hsc70-3), mRNA 
0   0  1  2  2  NM_167307.1  CG4147-RC, transcript variant C (Hsc70-3), mRNA 
0   0  0  7  3  NM_166339.1  CG7225-RA (wbl), mRNA 
0   0  0  5  8  NM_140424.1  CG9007-RA (CG9007), mRNA 
0   0  0  5  8  NM_176591.1  CG15532-RC, transcript variant C (hdc), mRNA 
0   0  0  5  8  NM_079853.2  CG15532-RA, transcript variant A (hdc), mRNA 
0   0  0  5  3  NM_206340.1  CG7319-RC, transcript variant C (mtTFB1), mRNA 
0   0  0  5  3  NM_140242.2  CG7319-RA, transcript variant A (mtTFB1), mRNA 
0   0  0  4  9  NM_136257.2  CG8677-RA (CG8677), mRNA 
0   0  0  4  8  NM_166671.1  CG30164-RA (CG30164), mRNA 
0   0  0  4  5  NM_167519.1  CG9968-RB, transcript variant B (Anxb11), mRNA 
0   0  0  4  4  NM_141453.2  CG1234-RA (CG1234), mRNA 
0   0  0  4  4  NM_143302.1  CG14264-RA (CG14264), mRNA 
0   0  0  4  3  NM_079895.2  CG11064-RA (RfaBp), mRNA 
0   0  0  4  3  NM_134683.1  CG4297-RA, transcript variant A (CG4297), mRNA 
0   0  0  4  3  NM_175945.1  CG4297-RB, transcript variant B (CG4297), mRNA 
 Wing Disc
GFP
 Puc
 Caspase
DAPI
 Merge
 Figure
JNK signal
N
 
DB
 
DC
+- 
DM
 
VM
 
VB
 
Caspase-3 signal
N
 
DB
 
DC
 
DM
 
VM
 
VB
 
Dcompartment   Penetrance
     
 Pathways (updated: 2024/04/26)
 KEGG Pathway

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