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NIG-RNAi Strains Detail

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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)

Stock ID

13811R-1

Symbol

CG13811

Full Name

CG13811

CG No

CG13811

Old CG No

CG13811

Synonyms

CG13811

Accession No (Link to NCBI)

NM_140926.1

Inserted Chr.

Insertional Mutation

Phenotype induced by Act5C-GAL4 at 28 degrees

male lethal, female semi-lethal

Map Viewer

Reference
[Please submit your publication]

Comment

Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)

Primer Seq. 5'

aaggcctacatggccggaccgCAGTGGCTTTGGACCAGGTCG

Primer Seq. 3'

aatctagaggtaccCTCGCCCAGTTCGCAACTGCT

Predicted Fragment Size

IR fragment full Seq

0001 CAGTGGCTTT GGACCAGGTC GAGATACCCA TTCCGGCGAC GGATATGCAC GAGAAACTCC 
0061 TGGAGAAGGA AGGCAAGACT GAGAGGACCA ATCTGCTGGG CAGGTCCAAG GACAAACCGC 
0121 CCAAGGACAA GCCGCCCAAG CAGTCGAAGT TCGCGGAgCG CTTGCGGCGC TCCTTCCGCC 
0181 GCGGCGATCA TCGATCCTTA GAGATCAAAC GACAGGAACC GACTCCGGAG GAACTGAAGG 
0241 CTAAGAGTCG GGCCACTCCA CCGCCGCCGA GTACTCTGCG CTCGGACAAC AATAACCGCC 
0301 TGCCATTTGC CCTGAGCCAC TTGAATTTGC CGGGTCTGGG ATTGGGAGTG GGCGTGGGTG 
0361 TCGGTGGACA CATCAATCCC GCCCTGCTGC TGGACAGTCC GGACGAGTGC ACGCCGCCGG 
0421 AGTACGCCTA TCAGCACCTG AGCAGCGTTG CCACAACCAA TTCGAGCACA TCTTTGGAGA 
0481 GCAGTTGCGA ACTGGGCGAG

in silico PCR Fragment

0001 CAGTGGCTTT GGACCAGGTC GAGATACCCA TTCCGGCGAC GGATATGCAC GAGAAACTCC 
0061 TGGAGAAGGA AGGCAAGACT GAGAGGACCA ATCTGCTGGG CAGGTCCAAG GACAAACCGC 
0121 CCAAGGACAA GCCGCCCAAG CAGTCGAAGT TCGCGGAGCG CTTGCGGCGC TCCTTCCGCC 
0181 GCGGCGATCA TCGATCCTTA GAGATCAAAC GACAGGAACC GACTCCGGAG GAACTGAAGG 
0241 CTAAGAGTCG GGCCACTCCA CCGCCGCCGA GTACTCTGCG CTCGGACAAC AATAACCGCC 
0301 TGCCATTTGC CCTGAGCCAC TTGAATTTGC CGGGTCTGGG ATTGGGAGTG GGCGTGGGTG 
0361 TCGGTGGACA CATCAATCCC GCCCTGCTGC TGGACAGTCC GGACGAGTGC ACGCCGCCGG 
0421 AGTACGCCTA TCAGCACCTG AGCAGCGTTG CCACAACCAA TTCGAGCACA TCTTTGGAGA 
0481 GCAGTTGCGA ACTGGGCGAG

Assemble Data

<PRE>

13811R-1.IR_full       1   CAGTGGCTTTGGACCAGGTCGAGATACCCATTCCGGCGACGGATATGCACGAGAAACTCC 60
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
13811R-1.in silico     1   CAGTGGCTTTGGACCAGGTCGAGATACCCATTCCGGCGACGGATATGCACGAGAAACTCC 60


13811R-1.IR_full       61  TGGAGAAGGAAGGCAAGACTGAGAGGACCAATCTGCTGGGCAGGTCCAAGGACAAACCGC 120
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
13811R-1.in silico     61  TGGAGAAGGAAGGCAAGACTGAGAGGACCAATCTGCTGGGCAGGTCCAAGGACAAACCGC 120


13811R-1.IR_full       121 CCAAGGACAAGCCGCCCAAGCAGTCGAAGTTCGCGGAGCGCTTGCGGCGCTCCTTCCGCC 180
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
13811R-1.in silico     121 CCAAGGACAAGCCGCCCAAGCAGTCGAAGTTCGCGGAGCGCTTGCGGCGCTCCTTCCGCC 180


13811R-1.IR_full       181 GCGGCGATCATCGATCCTTAGAGATCAAACGACAGGAACCGACTCCGGAGGAACTGAAGG 240
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
13811R-1.in silico     181 GCGGCGATCATCGATCCTTAGAGATCAAACGACAGGAACCGACTCCGGAGGAACTGAAGG 240


13811R-1.IR_full       241 CTAAGAGTCGGGCCACTCCACCGCCGCCGAGTACTCTGCGCTCGGACAACAATAACCGCC 300
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
13811R-1.in silico     241 CTAAGAGTCGGGCCACTCCACCGCCGCCGAGTACTCTGCGCTCGGACAACAATAACCGCC 300


13811R-1.IR_full       301 TGCCATTTGCCCTGAGCCACTTGAATTTGCCGGGTCTGGGATTGGGAGTGGGCGTGGGTG 360
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
13811R-1.in silico     301 TGCCATTTGCCCTGAGCCACTTGAATTTGCCGGGTCTGGGATTGGGAGTGGGCGTGGGTG 360


13811R-1.IR_full       361 TCGGTGGACACATCAATCCCGCCCTGCTGCTGGACAGTCCGGACGAGTGCACGCCGCCGG 420
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
13811R-1.in silico     361 TCGGTGGACACATCAATCCCGCCCTGCTGCTGGACAGTCCGGACGAGTGCACGCCGCCGG 420


13811R-1.IR_full       421 AGTACGCCTATCAGCACCTGAGCAGCGTTGCCACAACCAATTCGAGCACATCTTTGGAGA 480
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
13811R-1.in silico     421 AGTACGCCTATCAGCACCTGAGCAGCGTTGCCACAACCAATTCGAGCACATCTTTGGAGA 480


13811R-1.IR_full       481 GCAGTTGCGAACTGGGCGAG 500
                           ||||||||||||||||||||
13811R-1.in silico     481 GCAGTTGCGAACTGGGCGAG 500

</PRE>

Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)

Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch

cv	0mm	1mm	2mm	3mm	target transcript	off target name
100	482	4	8	8	NM_140926.1	CG13811-RA (CG13811), mRNA
0.2	1	4	6	9	NM_001043216.1	CG34113-RO, transcript variant O (CG34113), mRNA
0.2	1	4	6	6	NM_001043217.1	CG34113-RP, transcript variant P (CG34113), mRNA
0.2	1	3	4	7	NM_142889.1	CG4374-RA (CG4374), mRNA
0.2	1	2	3	3	NM_165585.1	CG12769-RB, transcript variant B (CG12769), mRNA
0.2	1	2	3	3	NM_136503.2	CG12769-RA, transcript variant A (CG12769), mRNA
0.2	1	2	2	8	NM_168571.2	CG32133-RA (CG32133), mRNA
0	0	4	9	11	NM_080046.2	CG10986-RB (g), mRNA
0	0	4	5	18	NM_057798.2	CG1650-RA (unpg), mRNA
0	0	4	4	3	NM_001042834.1	CG41475-RA (CG41475), mRNA
0	0	4	3	8	NM_143372.1	CG9995-RA (htt), mRNA
0	0	2	6	4	NM_138031.1	CG3173-RA (CG3173), mRNA
0	0	2	5	6	NM_134741.2	CG4947-RA (Tgt), mRNA
0	0	2	4	5	NM_170250.1	CG31090-RA (CG31090), mRNA
0	0	2	3	11	NM_001014752.1	CG33525-RF, transcript variant F (CG33525), mRNA
0	0	2	2	6	NM_079725.2	CG7050-RA (Nrx-1), mRNA
0	0	2	2	6	NM_001014753.1	CG33525-RE, transcript variant E (CG33525), mRNA
0	0	1	10	21	NM_166030.1	CG8118-RB, transcript variant B (mam), mRNA
0	0	1	10	21	NM_080376.1	CG8118-RA, transcript variant A (mam), mRNA
0	0	1	5	9	NM_078955.2	CG3454-RA (Hdc), mRNA
0	0	1	4	2	NM_205878.1	CG11148-RC, transcript variant C (CG11148), mRNA
0	0	1	4	2	NM_143693.2	CG11148-RA, transcript variant A (CG11148), mRNA
0	0	1	4	2	NM_205879.1	CG11148-RB, transcript variant B (CG11148), mRNA
0	0	1	3	6	NM_135216.2	CG11070-RA (CG11070), mRNA
0	0	1	3	5	NM_166852.1	CG17829-RC, transcript variant C (CG17829), mRNA
0	0	1	3	5	NM_166851.1	CG17829-RB, transcript variant B (CG17829), mRNA
0	0	1	3	5	NM_143797.1	CG17829-RA, transcript variant A (CG17829), mRNA
0	0	1	3	5	NM_164576.2	CG15427-RD, transcript variant D (tutl), mRNA
0	0	1	3	3	NM_142276.2	CG17930-RA (CG17930), mRNA
0	0	1	3	2	NM_139536.1	CG11505-RB, transcript variant B (CG11505), mRNA

Pathways (updated: 2024/04/26)

KEGG Pathway

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