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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 13671R-3 
 Symbol CG13671  Full Name CG13671 
 CG No CG13671  Old CG No CG13671 
 Synonyms CG13671 
 Accession No (Link to NCBI) NM_139945.2 
 Inserted Chr. lll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees viable 
 Map Viewer
 Reference
[Please submit your publication] 		 
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5' 
aaggcctacatggccggaccgTGCTCCTGGCTCTCTCTATCG 
 Primer Seq. 3' 
aatctagaggtaccAAGCAGACCCAAAACCACCGC 
 Predicted Fragment Size 
500 
 IR fragment full Seq 
0001 TGCTCCTGGC TCTCTCTATC GCTCAGTTGG ACGCCTCAAG GTCAGCCACA TCCGACCAGG 
0061 CTCCCATTGT CGAGTGTCCC GGACGCAGTN GTTCCCCAGC TCCGTGCGGA AGCGTCAGAG 
0121 TCAGAGATCT CGCTGCTATT TTACTACGTG TCCTGGGCCA GCGAAGCACG GCAGGCACGA 
0181 CTGGTCTACA ATGGACTGGC CCACTATTAC CAGGAGTATG GCTTCTTTGG AGCCATCGAT 
0241 TGCTGGCACT TGCAGTGCAA TTGCAGCCGT ACTTTGATGC CGGCACCAGG AGTCGCCGGC 
0301 GCAGGAGGTT ATCCTGACAA ATGGCCCACG CTGATCGTNC GCTACGGCCA AAAGCAGTTA 
0361 CTCCAGTACC AGGGCTCGTG GAGCTTTGAA GATCTCGCCC GGTTCATGAA TAACCTGCTT 
0421 CAGCCACTGG ACCGGGCACA CAGTAGTCAG GATCTCGCCG NCATTCGGAA GCACTCGGAT 
0481 GCGGTGGTTT TGGGTCTGCT T 
 in silico PCR Fragment 
0001 TGCTCCTGGC TCTCTCTATC GCTCAGTTGG ACGCCTCAAG GTCAGCCACA TCCGACCAGG 
0061 CTCCCATTGT CGAGTGTCCC GGACGCAGT- GTTCCCCAGC TCCGTGCGGA AGCGTCAGAG 
0121 TCAGAGATCT CGCTGCTATT TTACTACGTG TCCTGGGCCA GCGAAGCACG GCAGGCACGA 
0181 CTGGTCTACA ATGGACTGGC CCACTATTAC CAGGAGTATG GCTTCTTTGG AGCCATCGAT 
0241 TGCTGGCACT TGCAGTGCAA TTGCAGCCGT ACTTTGATGC CGGCACCAGG AGTCGCCGGC 
0301 GCAGGAGGTT ATCCTGACAA ATGGCCCACG CTGATCGTGC GCTACGGCCA AAAGCAGTTA 
0361 CTCCAGTACC AGGGCTCGTG GAGCTTTGAA GATCTCGCCC GGTTCATGAA TAACCTGCTT 
0421 CAGCCACTGG ACCGGGCACA CAGTAGTCAG GATCTCGCCG CCATTCGGAA GCACTCGGAT 
0481 GCGGTGGTTT TGGGTCTGCT T 
 Assemble Data 
<PRE>

13671R-3.IR_full       1   TGCTCCTGGCTCTCTCTATCGCTCAGTTGGACGCCTCAAGGTCAGCCACATCCGACCAGG 60
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
13671R-3.in silico     1   TGCTCCTGGCTCTCTCTATCGCTCAGTTGGACGCCTCAAGGTCAGCCACATCCGACCAGG 60


13671R-3.IR_full       61  CTCCCATTGTCGAGTGTCCCGGACGCAGT<span class="snp"><tt>N</tt></span>GTTCCCCAGCTCCGTGCGGAAGCGTCAGAG 120
                           |||||||||||||||||||||||||||||<span class="snp"><tt>&nbsp;</tt></span>||||||||||||||||||||||||||||||
13671R-3.in silico     61  CTCCCATTGTCGAGTGTCCCGGACGCAGT<span class="snp"><tt>-</tt></span>GTTCCCCAGCTCCGTGCGGAAGCGTCAGAG 120


13671R-3.IR_full       121 TCAGAGATCTCGCTGCTATTTTACTACGTGTCCTGGGCCAGCGAAGCACGGCAGGCACGA 180
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
13671R-3.in silico     121 TCAGAGATCTCGCTGCTATTTTACTACGTGTCCTGGGCCAGCGAAGCACGGCAGGCACGA 180


13671R-3.IR_full       181 CTGGTCTACAATGGACTGGCCCACTATTACCAGGAGTATGGCTTCTTTGGAGCCATCGAT 240
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
13671R-3.in silico     181 CTGGTCTACAATGGACTGGCCCACTATTACCAGGAGTATGGCTTCTTTGGAGCCATCGAT 240


13671R-3.IR_full       241 TGCTGGCACTTGCAGTGCAATTGCAGCCGTACTTTGATGCCGGCACCAGGAGTCGCCGGC 300
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
13671R-3.in silico     241 TGCTGGCACTTGCAGTGCAATTGCAGCCGTACTTTGATGCCGGCACCAGGAGTCGCCGGC 300


13671R-3.IR_full       301 GCAGGAGGTTATCCTGACAAATGGCCCACGCTGATCGT<span class="snp"><tt>N</tt></span>CGCTACGGCCAAAAGCAGTTA 360
                           ||||||||||||||||||||||||||||||||||||||<span class="snp"><tt>&nbsp;</tt></span>|||||||||||||||||||||
13671R-3.in silico     301 GCAGGAGGTTATCCTGACAAATGGCCCACGCTGATCGT<span class="snp"><tt>G</tt></span>CGCTACGGCCAAAAGCAGTTA 360


13671R-3.IR_full       361 CTCCAGTACCAGGGCTCGTGGAGCTTTGAAGATCTCGCCCGGTTCATGAATAACCTGCTT 420
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
13671R-3.in silico     361 CTCCAGTACCAGGGCTCGTGGAGCTTTGAAGATCTCGCCCGGTTCATGAATAACCTGCTT 420


13671R-3.IR_full       421 CAGCCACTGGACCGGGCACACAGTAGTCAGGATCTCGCCG<span class="snp"><tt>N</tt></span>CATTCGGAAGCACTCGGAT 480
                           ||||||||||||||||||||||||||||||||||||||||<span class="snp"><tt>&nbsp;</tt></span>|||||||||||||||||||
13671R-3.in silico     421 CAGCCACTGGACCGGGCACACAGTAGTCAGGATCTCGCCG<span class="snp"><tt>C</tt></span>CATTCGGAAGCACTCGGAT 480


13671R-3.IR_full       481 GCGGTGGTTTTGGGTCTGCTT 501
                           |||||||||||||||||||||
13671R-3.in silico     481 GCGGTGGTTTTGGGTCTGCTT 501

</PRE>
 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  0  0  1  NM_139945.2  CG13671-RA (CG13671), mRNA 
0   0  2  2  2  NM_001042820.1  CG34145-RA (CG34145), mRNA 
0   0  1  4  4  NM_137027.1  CG4744-RA (CG4744), mRNA 
0   0  1  3  3  NM_135038.1  CG8869-RA (Jon25Bii), mRNA 
0   0  1  3  2  NM_136498.1  CG11198-RA, transcript variant A (CG11198), mRNA 
0   0  1  3  2  NM_165581.1  CG11198-RB, transcript variant B (CG11198), mRNA 
0   0  1  2  2  NM_143112.1  CG11878-RA (CG11878), mRNA 
0   0  0  4  4  NM_057582.4  CG18466-RA, transcript variant A (Nmdmc), mRNA 
0   0  0  4  4  NM_057581.4  CG18466-RB, transcript variant B (Nmdmc), mRNA 
0   0  0  4  3  NM_133165.2  CG1079-RA (CG1079), mRNA 
0   0  0  4  3  NM_080358.2  CG1484-RA (fliI), mRNA 
0   0  0  4  2  NM_078881.2  CG13968-RA, transcript variant A (sNPF), mRNA 
0   0  0  4  2  NM_165316.1  CG13968-RB, transcript variant B (sNPF), mRNA 
0   0  0  4  2  NM_142563.1  CG16718-RA, transcript variant A (CG16718), mRNA 
0   0  0  4  2  NM_169867.1  CG16718-RB, transcript variant B (CG16718), mRNA 
0   0  0  3  7  NM_140568.1  CG5830-RA (CG5830), mRNA 
0   0  0  3  6  NM_080505.2  CG8361-RA (HLHm7), mRNA 
0   0  0  3  5  NM_132752.2  CG9517-RA, transcript variant A (CG9517), mRNA 
0   0  0  3  5  NM_167418.1  CG9517-RB, transcript variant B (CG9517), mRNA 
0   0  0  3  5  NM_170032.2  CG5248-RB, transcript variant B (loco), mRNA 
0   0  0  3  5  NM_134871.1  CG3131-RA (Duox), mRNA 
0   0  0  3  5  NM_132040.1  CG15766-RA (CG15766), mRNA 
0   0  0  3  5  NM_079322.2  CG10605-RA (caup), mRNA 
0   0  0  3  4  NM_164557.1  CG10021-RB, transcript variant B (bowl), mRNA 
0   0  0  3  4  NM_057535.2  CG10021-RC, transcript variant C (bowl), mRNA 
0   0  0  3  4  NM_164558.1  CG10021-RD, transcript variant D (bowl), mRNA 
0   0  0  3  4  NM_164556.1  CG10021-RA, transcript variant A (bowl), mRNA 
0   0  0  3  4  NM_206585.1  CG31038-RE, transcript variant E (CG31038), mRNA 
0   0  0  3  4  NM_206584.1  CG31038-RF, transcript variant F (CG31038), mRNA 
0   0  0  3  4  NM_170449.2  CG31038-RD, transcript variant D (CG31038), mRNA 
 Pathways (updated: 2024/04/26)
 KEGG Pathway

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