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Notification of resumption of orders:

Orders have been suspended as a response to the COVID-19 infection, but it will be resumed today, May 11. However, we would like to set our organizational framework that prioritizes the maintenance of stocks for the time being. In addition, due to delays in delivery of postal items, it is expected that the flies you ordered will not reach you in normal period. We apologize for the inconvenience.

Thank you for your understanding.

NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 13616R-4 
 Symbol CG13616  Full Name CG13616 
 CG No CG13616  Old CG No CG13616 
 Synonyms CG13616 
 Accession No (Link to NCBI) NM_143005.1 
 Inserted Chr. ll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees lethal 
 Map Viewer
 Reference
[Please submit your publication]
 
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgCGAACTGGCCACTTCAGTTTG 
 Primer Seq. 3'
aatctagaggtaccGAGGGAGGCAGGCTAAAGACA 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 CGAACTGGCC ACTTCAGTTT GCTGGCACTT TGCCTCCTGC TGCACGAGGT GCAATCCCAG 
0061 GTGATGTCCA TGTCATCAGC TGCCAACCGG ACAGGGGAGG TGACCAAAGT TCTGCGCCGG 
0121 CACAAGCGTT ATCTGGCATT TCCGGAGGGC TCATCGGTTT CGGGCGCCGT TTGCATGACG 
0181 ATCGGCATGA TTGGCAATCC AGATGTTGAC TATCTCAGCT GCGGCGGTCA ACTGGGGCGT 
0241 GGCATACGAT CTGCCCAACC ATCAGTGGGT CATCCAACAC GCCCATGGAC TGAACGCCAC 
0301 CCTGGCCAAG GATACCATTA AGCGGCGATC CCGGCGAGCT TTTTACGATG AGGTGCAGTC 
0361 TTTATTTGAT AACATGGGTT TCAATGGTCG TTCGTGTGTG GCTCGAGCTC TATGCGAAAG 
0421 TGCCAAGTTC ATGTTGCCGT CGGTGGAACG GGGAAACATG TTGCAGGAGT TGGTCAGGAC 
0481 TGTCTTTAGC CTGCCTCCCT C 
 in silico PCR Fragment
0001 CGAACTGGCC ACTTCAGTTT GCTGGCACTT TGCCTCCTGC TGCACGAGGT GCAATCCCAG 
0061 GTGATGTCCA TGTCATCAGC TGCCAACCGG ACAGGGGAGG TGACCAAAGT TCTGCGCCGG 
0121 CACAAGCGTT ATCTGGCATT TCCGGAGGGC TCATCGGTTT CGGGCGCCGT TTGCATGACG 
0181 ATCGGCATGA TTGGCAATCC AGATGTTGAC TATCTCAGCT G-GGCGGTCA ACTGGGGCGT 
0241 GGCATACGAT CTGCCCAACC ATCAGTGGGT CATCCAACAC GCCCATGGAC TGAACGCCAC 
0301 CCTGGCCAAG GATACCATTA AGCGGCGATC CCGGCGAGCT TTTTACGATG AGGTGCAGTC 
0361 TTTATTTGAT AACATGGGTT TCAATGGTCG TTCGTGTGTG GCTCGAGCTC TATGCGAAAG 
0421 TGCCAAGTTC ATGTTGCCGT CGGTGGAACG GGGAAACATG TTGCAGGAGT TGGTCAGGAC 
0481 TGTCTTTAGC CTGCCTCCCT C 
 Assemble Data

13616R-4.IR_full       1   CGAACTGGCCACTTCAGTTTGCTGGCACTTTGCCTCCTGCTGCACGAGGTGCAATCCCAG 60
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
13616R-4.in silico     1   CGAACTGGCCACTTCAGTTTGCTGGCACTTTGCCTCCTGCTGCACGAGGTGCAATCCCAG 60


13616R-4.IR_full       61  GTGATGTCCATGTCATCAGCTGCCAACCGGACAGGGGAGGTGACCAAAGTTCTGCGCCGG 120
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
13616R-4.in silico     61  GTGATGTCCATGTCATCAGCTGCCAACCGGACAGGGGAGGTGACCAAAGTTCTGCGCCGG 120


13616R-4.IR_full       121 CACAAGCGTTATCTGGCATTTCCGGAGGGCTCATCGGTTTCGGGCGCCGTTTGCATGACG 180
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
13616R-4.in silico     121 CACAAGCGTTATCTGGCATTTCCGGAGGGCTCATCGGTTTCGGGCGCCGTTTGCATGACG 180


13616R-4.IR_full       181 ATCGGCATGATTGGCAATCCAGATGTTGACTATCTCAGCTGCGGCGGTCAACTGGGGCGT 240
                           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
13616R-4.in silico     181 ATCGGCATGATTGGCAATCCAGATGTTGACTATCTCAGCTG-GGCGGTCAACTGGGGCGT 240


13616R-4.IR_full       241 GGCATACGATCTGCCCAACCATCAGTGGGTCATCCAACACGCCCATGGACTGAACGCCAC 300
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
13616R-4.in silico     241 GGCATACGATCTGCCCAACCATCAGTGGGTCATCCAACACGCCCATGGACTGAACGCCAC 300


13616R-4.IR_full       301 CCTGGCCAAGGATACCATTAAGCGGCGATCCCGGCGAGCTTTTTACGATGAGGTGCAGTC 360
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
13616R-4.in silico     301 CCTGGCCAAGGATACCATTAAGCGGCGATCCCGGCGAGCTTTTTACGATGAGGTGCAGTC 360


13616R-4.IR_full       361 TTTATTTGATAACATGGGTTTCAATGGTCGTTCGTGTGTGGCTCGAGCTCTATGCGAAAG 420
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
13616R-4.in silico     361 TTTATTTGATAACATGGGTTTCAATGGTCGTTCGTGTGTGGCTCGAGCTCTATGCGAAAG 420


13616R-4.IR_full       421 TGCCAAGTTCATGTTGCCGTCGGTGGAACGGGGAAACATGTTGCAGGAGTTGGTCAGGAC 480
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
13616R-4.in silico     421 TGCCAAGTTCATGTTGCCGTCGGTGGAACGGGGAAACATGTTGCAGGAGTTGGTCAGGAC 480


13616R-4.IR_full       481 TGTCTTTAGCCTGCCTCCCTC 501
                           |||||||||||||||||||||
13616R-4.in silico     481 TGTCTTTAGCCTGCCTCCCTC 501

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  NM_143005.1  CG13616-RA (CG13616), mRNA 
0   NM_135554.2  CG5300-RA (Klp31E), mRNA 
0   NM_137486.3  CG17533-RA (GstE8), mRNA 
0   NM_078737.2  CG16987-RA, transcript variant A (Alp23B), mRNA 
0   NM_164503.1  CG16987-RB, transcript variant B (Alp23B), mRNA 
0   NM_079613.2  CG7642-RA (ry), mRNA 
0   NM_176243.1  CG18375-RB, transcript variant B (CG18375), mRNA 
0   NM_137721.1  CG18375-RA, transcript variant A (CG18375), mRNA 
0   NM_079949.2  CG7586-RA (Mcr), mRNA 
0   NM_166546.2  CG30092-RD, transcript variant D (jbug), mRNA 
0   NM_206644.1  CG15332-RB, transcript variant B (CG15332), mRNA 
0   NM_132201.1  CG15332-RA, transcript variant A (CG15332), mRNA 
0   NM_134486.1  CG14221-RA (CG14221), mRNA 
0   NM_001043010.1  CG9432-RD, transcript variant D (l(2)01289), mRNA 
0   NM_165485.1  CG9432-RB, transcript variant B (l(2)01289), mRNA 
0   NM_168088.1  CG32249-RA (CG32249), mRNA 
0   10  NM_176447.1  CG33208-RF, transcript variant F (MICAL), mRNA 
0   10  NM_176445.1  CG33208-RC, transcript variant C (MICAL), mRNA 
0   10  NM_176449.1  CG33208-RH, transcript variant H (MICAL), mRNA 
0   10  NM_176448.1  CG33208-RG, transcript variant G (MICAL), mRNA 
0   10  NM_176446.1  CG33208-RD, transcript variant D (MICAL), mRNA 
0   NM_142218.1  CG18522-RA (CG18522), mRNA 
0   NM_079217.2  CG10539-RA (S6k), mRNA 
0   NM_143769.3  CG9432-RA, transcript variant A (l(2)01289), mRNA 
0   NM_176450.1  CG33208-RA, transcript variant A (MICAL), mRNA 
0   NM_176443.1  CG33208-RE, transcript variant E (MICAL), mRNA 
0   NM_176444.1  CG33208-RB, transcript variant B (MICAL), mRNA 
0   NM_142346.1  CG5246-RA (CG5246), mRNA 
0   NM_168578.1  CG17285-RB, transcript variant B (Fbp1), mRNA 
0   NM_079341.1  CG17285-RA, transcript variant A (Fbp1), mRNA 

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