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NIG-RNAi Strains Detail

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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)

Stock ID

13472R-3

Symbol

CG13472

Full Name

CG13472

CG No

CG13472

Old CG No

CG13472

Synonyms

CG13472

Accession No (Link to NCBI)

NM_140467.2

Inserted Chr.

Insertional Mutation

Phenotype induced by Act5C-GAL4 at 28 degrees

viable

Map Viewer

Reference
[Please submit your publication]

Park J, Lee J, Kim JH, Lee J, Park H, Lim C.<br> ZNF598 co-translationally titrates poly(GR) protein implicated in the pathogenesis of C9ORF72-associated ALS/FTD.<br> Nucleic Acids Res (2021) 49(19) 11294-11311 [ PubMed ID = 34551427 ] [ RRC reference ]

Mummery-Widmer JL, Yamazaki M, Stoeger T, Novatchkova M, Bhalerao S, Chen D, Dietzl G, Dickson BJ, Knoblich JA.<br> Genome-wide analysis of Notch signalling in Drosophila by transgenic RNAi.<br> Nature (2009) 458(7241) 987-92 [ PubMed ID = 19363474 ] [ RRC reference ]

Comment

Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)

Primer Seq. 5'

aaggcctacatggccggaccgACCTGACAGAGGAGGGCCTTA

Primer Seq. 3'

aatctagaggtaccTGGCGCTGATGTCCCATTCAA

Predicted Fragment Size

IR fragment full Seq

0001 ACCTGACAGA GGAgGGCCTT AAAATCGTGA CAACAGCCGT CGGCAGCGAG GATGTCCGGA 
0061 AAATAGTCAA TGATGCACTG AATCGAGATC TGCGCGATAT TGGCGGTGGC GCACTGNCCG 
0121 CGAAACGCGA AGATGCCACT TTGCCCGGTA AAATTGTGCT GCAGGTTCAG CGTGTGCGAA 
0181 ATATTGCCGC TCCCAAGGCG AATGAGGAAT CGAAGGCGGC GCCACGCCTC CNTTCAGTTG 
0241 GATCTGAGTG ATGGGCAGAA TTCCATAAAG GCCTTGGAGC TGGAGCCAGT TCCCCAACTG 
0301 AATCTCAATG TGGCTCCCGG AAGCAAGATC TATTTCAAGG CCGAGAAACT GCAGCTTATG 
0361 CAGGGATTCC TGCTGCTAAA GTCCAGTGAA ATTCAGCTGC TCGGCGGCCG TGTGGATGCA 
0421 CTCTACGAGA AATGGGATCT GGCCAGGACC ATGATGAGAT ATGCNCGCAG TGGGCGCCCC 
0481 TTGAATGGGA CATCAGCGCC A

in silico PCR Fragment

0001 ACCTGACAGA GGAGGGCCTT AAAATCGTGA CAACAGCCGT CGGCAGCGAG GATGTCCGGA 
0061 AAATAGTCAA TGATGCACTG AATCGAGATC TGCGCGATAT TGGCGGTGGC GCACTGCCCG 
0121 CGAAACGCGA AGATGCCACT TTGCCCGGTA AAATTGTGCT GCAGGTTCAG CGTGTGCGAA 
0181 ATATTGCCGC TCCCAAGGCG AATGAGGAAT CGAAGGCGGC GCCACGCCTC C-TTCAGTTG 
0241 GATCTGAGTG ATGGGCAGAA TTCCATAAAG GCCTTGGAGC TGGAGCCAGT TCCCCAACTG 
0301 AATCTCAATG TGGCTCCCGG AAGCAAGATC TATTTCAAGG CCGAGAAACT GCAGCTTATG 
0361 CAGGGATTCC TGCTGCTAAA GTCCAGTGAA ATTCAGCTGC TCGGCGGCCG TGTGGATGCA 
0421 CTCTACGAGA AATGGGATCT GGCCAGGACC ATGATGAGAT ATGCGCGCAG TGGGCGCCCC 
0481 TTGAATGGGA CATCAGCGCC A

Assemble Data

<PRE>

13472R-3.IR_full       1   ACCTGACAGAGGAGGGCCTTAAAATCGTGACAACAGCCGTCGGCAGCGAGGATGTCCGGA 60
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
13472R-3.in silico     1   ACCTGACAGAGGAGGGCCTTAAAATCGTGACAACAGCCGTCGGCAGCGAGGATGTCCGGA 60


13472R-3.IR_full       61  AAATAGTCAATGATGCACTGAATCGAGATCTGCGCGATATTGGCGGTGGCGCACTG<span class="snp"><tt>N</tt></span>CCG 120
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||<span class="snp"><tt>&nbsp;</tt></span>|||
13472R-3.in silico     61  AAATAGTCAATGATGCACTGAATCGAGATCTGCGCGATATTGGCGGTGGCGCACTG<span class="snp"><tt>C</tt></span>CCG 120


13472R-3.IR_full       121 CGAAACGCGAAGATGCCACTTTGCCCGGTAAAATTGTGCTGCAGGTTCAGCGTGTGCGAA 180
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
13472R-3.in silico     121 CGAAACGCGAAGATGCCACTTTGCCCGGTAAAATTGTGCTGCAGGTTCAGCGTGTGCGAA 180


13472R-3.IR_full       181 ATATTGCCGCTCCCAAGGCGAATGAGGAATCGAAGGCGGCGCCACGCCTCC<span class="snp"><tt>N</tt></span>TTCAGTTG 240
                           |||||||||||||||||||||||||||||||||||||||||||||||||||<span class="snp"><tt>&nbsp;</tt></span>||||||||
13472R-3.in silico     181 ATATTGCCGCTCCCAAGGCGAATGAGGAATCGAAGGCGGCGCCACGCCTCC<span class="snp"><tt>-</tt></span>TTCAGTTG 240


13472R-3.IR_full       241 GATCTGAGTGATGGGCAGAATTCCATAAAGGCCTTGGAGCTGGAGCCAGTTCCCCAACTG 300
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
13472R-3.in silico     241 GATCTGAGTGATGGGCAGAATTCCATAAAGGCCTTGGAGCTGGAGCCAGTTCCCCAACTG 300


13472R-3.IR_full       301 AATCTCAATGTGGCTCCCGGAAGCAAGATCTATTTCAAGGCCGAGAAACTGCAGCTTATG 360
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
13472R-3.in silico     301 AATCTCAATGTGGCTCCCGGAAGCAAGATCTATTTCAAGGCCGAGAAACTGCAGCTTATG 360


13472R-3.IR_full       361 CAGGGATTCCTGCTGCTAAAGTCCAGTGAAATTCAGCTGCTCGGCGGCCGTGTGGATGCA 420
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
13472R-3.in silico     361 CAGGGATTCCTGCTGCTAAAGTCCAGTGAAATTCAGCTGCTCGGCGGCCGTGTGGATGCA 420


13472R-3.IR_full       421 CTCTACGAGAAATGGGATCTGGCCAGGACCATGATGAGATATGC<span class="snp"><tt>N</tt></span>CGCAGTGGGCGCCCC 480
                           ||||||||||||||||||||||||||||||||||||||||||||<span class="snp"><tt>&nbsp;</tt></span>|||||||||||||||
13472R-3.in silico     421 CTCTACGAGAAATGGGATCTGGCCAGGACCATGATGAGATATGC<span class="snp"><tt>G</tt></span>CGCAGTGGGCGCCCC 480


13472R-3.IR_full       481 TTGAATGGGACATCAGCGCCA 501
                           |||||||||||||||||||||
13472R-3.in silico     481 TTGAATGGGACATCAGCGCCA 501

</PRE>

Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)

Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch

cv	0mm	1mm	2mm	3mm	target transcript	off target name
100	482	0	0	0	NM_140467.2	CG13472-RA (CG13472), mRNA
0.2	1	2	4	2	NM_058140.3	CG10033-RB, transcript variant B (for), mRNA
0.2	1	2	4	2	NM_205906.1	CG10033-RH, transcript variant H (for), mRNA
0.2	1	2	4	2	NM_205904.1	CG10033-RI, transcript variant I (for), mRNA
0.2	1	2	4	2	NM_058139.3	CG10033-RA, transcript variant A (for), mRNA
0	0	2	6	5	NM_136502.2	CG14762-RA (CG14762), mRNA
0	0	2	2	5	NM_166524.1	CG3413-RA, transcript variant A (wdp), mRNA
0	0	2	2	5	NM_166525.1	CG3413-RC, transcript variant C (wdp), mRNA
0	0	2	2	5	NM_166526.1	CG3413-RD, transcript variant D (wdp), mRNA
0	0	2	2	5	NM_137817.2	CG3413-RB, transcript variant B (wdp), mRNA
0	0	1	4	4	NM_206560.1	CG13614-RB, transcript variant B (CG13614), mRNA
0	0	1	4	4	NM_142999.2	CG13614-RA, transcript variant A (CG13614), mRNA
0	0	1	4	2	NM_166148.1	CG8430-RB, transcript variant B (Got1), mRNA
0	0	1	4	2	NM_137242.2	CG8430-RA, transcript variant A (Got1), mRNA
0	0	1	3	4	NM_079845.2	CG7951-RA (sima), mRNA
0	0	1	3	4	NM_169386.1	CG17228-RA, transcript variant A (pros), mRNA
0	0	1	3	4	NM_176459.1	CG17228-RD, transcript variant D (pros), mRNA
0	0	1	3	4	NM_079593.3	CG17228-RC, transcript variant C (pros), mRNA
0	0	1	3	4	NM_134507.1	CG14234-RA (CG14234), mRNA
0	0	1	3	3	NM_141948.1	CG5333-RA (trus), mRNA
0	0	1	2	13	NM_143300.1	CG3339-RA, transcript variant A (CG3339), mRNA
0	0	1	2	13	NM_001043297.1	CG3339-RB, transcript variant B (CG3339), mRNA
0	0	1	2	3	NM_135666.1	CG6589-RA (CG6589), mRNA
0	0	0	6	8	NM_166047.1	CG8603-RB, transcript variant B (CG8603), mRNA
0	0	0	6	8	NM_137108.2	CG8603-RA, transcript variant A (CG8603), mRNA
0	0	0	5	3	NM_079503.2	CG9761-RA (Nep2), mRNA
0	0	0	4	4	NM_137385.1	CG18432-RA (CG18432), mRNA
0	0	0	4	4	NM_168687.1	CG9674-RC, transcript variant C (CG9674), mRNA
0	0	0	4	4	NM_132959.2	CG8949-RA (CG8949), mRNA
0	0	0	4	4	NM_168686.1	CG9674-RB, transcript variant B (CG9674), mRNA

Pathways (updated: 2024/04/26)

KEGG Pathway

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