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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 1321R-1 
 Symbol shakB  Full Name shaking B 
 CG No CG34358  Old CG No CG1321 
 Synonyms FBgn0085387, CG12678, shakB, shaking B, CG32508, CG1321, CG15451, Pas, l(1)19Eb, l(1)LB21, l(1)R-10-14, l(1)R-10-3, l(1)R-10-7, l(1)TH73, l(1)W3b, nj-156, nj156, pas, Passover, non-jumper-156, passover, 2, 3, section 2, section 3, 6, section 6, E81, R9-29, W3, l(1)W3, R-9-29, l(1)R-9-29, pass, shak-B, shkB, shaking-B, ShakB, Shak-B, shB, Shak B, passover-vital protein, Shaking-B, CG34358 
 Accession No (Link to NCBI) NM_170660.1 
 Inserted Chr. ll 
 Insertional Mutation  lethal 
 Phenotype induced by Act5C-GAL4 at 28 degrees lethal 
 Map Viewer
 Reference
[Please submit your publication]
 
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgCCGCCTGCATTACTCAATAAC 
 Primer Seq. 3'
aatctagaggtaccTTATAAGGGCGAGCAGCTCAC 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 CCGCCTGCAT TACTCAATAA CTGTGATGAT TCTGATGTCA TTCTCGCTAA TTATAACCAC 
0061 GCGCCAGTAC GTTGGCAATC CGATCGATTG TGTGCACACC AAAGATATTC CAGAGGATGT 
0121 GCTCAACACT TACTGCTGGA TCCAGTCCAC CTACACGCTC AAGAGCCTCT TCCTGAAGAA 
0181 GCAGGGCGTG TCGGTTCCAT ATCCGGGCAT CGGCAACTCC GACGGTGATC CGGCGGACAA 
0241 GAAGCACTAC AAGTACTACC AGTGGGTCTG CTTCTGCCTC TTCTTTCAGG CAATCTTATT 
0301 TTATACACCA AGATGGCTGT GGAAATCTTG GGAGGGTGGC AAGATTCATG CGCTCATCAT 
0361 GGACTTAGAC ATAGGCATTT GTTCCGAAGC CGAGAAAAAA CAAAAAAAGA AATTACTTTT 
0421 AGATTATTTG TGGGAAAATT TAAGATATCA CAATTGGTGG GCGTACAGAT ATTACGTGTG 
0481 TGAGCTGCTC GCCCTTATAA  
 in silico PCR Fragment
0001 CCGCCTGCAT TACTCAATAA CTGTGATGAT TCTGATGTCA TTCTCGCTAA TTATAACCAC 
0061 GCGCCAGTAC GTTGGCAATC CGATCGATTG TGTGCACACC AAAGATATTC CAGAGGATGT 
0121 GCTCAACACT TACTGCTGGA TCCAGTCCAC CTACACGCTC AAGAGCCTCT TCCTGAAGAA 
0181 GCAGGGCGTG TCGGTTCCAT ATCCGGGCAT CGGCAACTCC GACGGTGATC CGGCGGACAA 
0241 GAAGCACTAC AAGTACTACC AGTGGGTCTG CTTCTGCCTC TTCTTTCAGG CAATCTTATT 
0301 TTATACACCA AGATGGCTGT GGAAATCTTG GGAGGGTGGC AAGATTCATG CGCTCATCAT 
0361 GGACTTAGAC ATAGGCATTT GTTCCGAAGC CGAGAAAAAA CAAAAAAAGA AATTACTTTT 
0421 AGATTATTTG TGGGAAAATT TAAGATATCA CAATTGGTGG GCGTACAGAT ATTACGTGTG 
0481 TGAGCTGCTC GCCCTTATAA  
 Assemble Data
 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
 

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