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Notice:
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Suspension of shipments during Golden Week Holidays: From 29 April to 13 May, deadline 16 April.
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| NIG-RNAi Strains Detail |
| Request : Click the "Order" button to request for this stock |
discarded
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| Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
| Stock ID |
13039R-2 |
| Symbol |
CG13039 |
Full Name |
CG13039 |
| CG No |
CG13039 |
Old CG No |
CG13039 |
| Synonyms |
BcDNA:AT27312, CG13039 |
| Accession No (Link to NCBI) |
NM_140619.2 |
| Inserted Chr. |
lll |
| Insertional Mutation |
|
| Phenotype induced by Act5C-GAL4 at 28 degrees |
viable |
| Map Viewer |
|
Reference
[Please submit your publication]
|
Tiwari P, Kumar A, Das RN, Malhotra V, VijayRaghavan K.<br> A Tendon Cell Specific RNAi Screen Reveals Novel Candidates Essential for Muscle Tendon Interaction.<br> PLoS One (2015) 10(10) e0140976
[
PubMed ID = 26488612
]
[
RRC reference
]
Umemori M, Habara O, Iwata T, Maeda K, Nishinoue K, Okabe A, Takemura M, Takahashi K, Saigo K, Ueda R, Adachi-Yamada T.<br> RNAi-mediated knockdown showing impaired cell survival in Drosophila wing imaginal disc.<br> Gene Regul Syst Bio (2009) 3 11-20
[
PubMed ID = 19838331
]
[
RRC reference
]
|
| Comment |
|
| Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
| Primer Seq. 5' |
aaggcctacatggccggaccgATGTCGAATACCAGTCGTCGC |
| Primer Seq. 3' |
aatctagaggtaccGGTGCTGGATCAGGTTCTCGT |
| Predicted Fragment Size |
367 |
| IR fragment full Seq |
0001 ATGTCGAATA CCAGTCGTCG CGATATTTGG GTGCCCAGTC CCGCCATTAT ACTGCATCAG
0061 ATGCAATCCA ACGAGGATGT GTCCGATGAA TCAACTCTGG AATACCATGA GGAATCCAAC
0121 CAGGCGTGGC GCGAACAGTA TATGGCCAAA AACGTGGCCA GNAATGGGAG TCGGTTTCGA
0181 GTTCGTGAAC TCAACCTCTC GCTACATGAG CTCCTTGAGC AGCACCCAGG ATGACGATAC
0241 AGAGAACCAC GTGATTGGTA ATTCATCTTC CAGCACCACC TATCGAGTGG GGCCCACCAT
0301 CCGAATCCCC CGTCTCGAAA TTCAGTCTTA CAGTTCCGGG TCGGATGACG AGAACCTGAT
0361 CCAGCACC |
| in silico PCR Fragment |
0001 ATGTCGAATA CCAGTCGTCG CGATATTTGG GTGCCCAGTC CCGCCATTAT ACTGCATCAG
0061 ATGCAATCCA ACGAGGATGT GTCCGATGAA TCAACTCTGG AATACCATGA GGAATCCAAC
0121 CAGGCGTGGC GCGAACAGTA TATGGCCAAA AACGTGGCCA G-AATGGGAG TCGGTTTCGA
0181 GTTCGTGAAC TCAACCTCTC GCTACATGAG CTCCTTGAGC AGCACCCAGG ATGACGATAC
0241 AGAGAACCAC GTGATTGGTA ATTCATCTTC CAGCACCACC TATCGAGTGG GGCCCACCAT
0301 CCGAATCCCC CGTCTCGAAA TTCAGTCTTA CAGTTCCGGG TCGGATGACG AGAACCTGAT
0361 CCAGCACC |
| Assemble Data |
<PRE>
13039R-2.IR_full 1 ATGTCGAATACCAGTCGTCGCGATATTTGGGTGCCCAGTCCCGCCATTATACTGCATCAG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
13039R-2.in silico 1 ATGTCGAATACCAGTCGTCGCGATATTTGGGTGCCCAGTCCCGCCATTATACTGCATCAG 60
13039R-2.IR_full 61 ATGCAATCCAACGAGGATGTGTCCGATGAATCAACTCTGGAATACCATGAGGAATCCAAC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
13039R-2.in silico 61 ATGCAATCCAACGAGGATGTGTCCGATGAATCAACTCTGGAATACCATGAGGAATCCAAC 120
13039R-2.IR_full 121 CAGGCGTGGCGCGAACAGTATATGGCCAAAAACGTGGCCAG<span class="snp"><tt>N</tt></span>AATGGGAGTCGGTTTCGA 180
|||||||||||||||||||||||||||||||||||||||||<span class="snp"><tt> </tt></span>||||||||||||||||||
13039R-2.in silico 121 CAGGCGTGGCGCGAACAGTATATGGCCAAAAACGTGGCCAG<span class="snp"><tt>-</tt></span>AATGGGAGTCGGTTTCGA 180
13039R-2.IR_full 181 GTTCGTGAACTCAACCTCTCGCTACATGAGCTCCTTGAGCAGCACCCAGGATGACGATAC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
13039R-2.in silico 181 GTTCGTGAACTCAACCTCTCGCTACATGAGCTCCTTGAGCAGCACCCAGGATGACGATAC 240
13039R-2.IR_full 241 AGAGAACCACGTGATTGGTAATTCATCTTCCAGCACCACCTATCGAGTGGGGCCCACCAT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
13039R-2.in silico 241 AGAGAACCACGTGATTGGTAATTCATCTTCCAGCACCACCTATCGAGTGGGGCCCACCAT 300
13039R-2.IR_full 301 CCGAATCCCCCGTCTCGAAATTCAGTCTTACAGTTCCGGGTCGGATGACGAGAACCTGAT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
13039R-2.in silico 301 CCGAATCCCCCGTCTCGAAATTCAGTCTTACAGTTCCGGGTCGGATGACGAGAACCTGAT 360
13039R-2.IR_full 361 CCAGCACC 368
||||||||
13039R-2.in silico 361 CCAGCACC 368
</PRE>
|
| Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
|
| cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
| 100 |
349 |
0 |
0 |
0 |
NM_140619.2 |
CG13039-RA (CG13039), mRNA |
| 0 |
0 |
1 |
3 |
2 |
NM_136135.2 |
CG10132-RA (CG10132), mRNA |
| 0 |
0 |
1 |
3 |
2 |
NM_165604.1 |
CG30366-RA (CG30366), mRNA |
| 0 |
0 |
1 |
3 |
2 |
NM_166924.1 |
CG4199-RF, transcript variant F (CG4199), mRNA |
| 0 |
0 |
1 |
3 |
2 |
NM_166921.1 |
CG4199-RE, transcript variant E (CG4199), mRNA |
| 0 |
0 |
1 |
3 |
2 |
NM_166923.1 |
CG4199-RC, transcript variant C (CG4199), mRNA |
| 0 |
0 |
1 |
3 |
2 |
NM_130620.2 |
CG4199-RD, transcript variant D (CG4199), mRNA |
| 0 |
0 |
1 |
3 |
2 |
NM_166922.1 |
CG4199-RB, transcript variant B (CG4199), mRNA |
| 0 |
0 |
1 |
3 |
2 |
NM_166925.1 |
CG4199-RA, transcript variant A (CG4199), mRNA |
| 0 |
0 |
1 |
2 |
4 |
NM_170145.1 |
CG31128-RA (CG31128), mRNA |
| 0 |
0 |
0 |
12 |
20 |
NM_135596.2 |
CG7300-RB, transcript variant B (CG7300), mRNA |
| 0 |
0 |
0 |
7 |
21 |
NM_001032051.1 |
CG33715-RD, transcript variant D (Msp-300), mRNA |
| 0 |
0 |
0 |
7 |
4 |
NM_080535.2 |
CG9774-RA (rok), mRNA |
| 0 |
0 |
0 |
5 |
3 |
NM_135514.2 |
CG4908-RA, transcript variant A (CG4908), mRNA |
| 0 |
0 |
0 |
5 |
3 |
NM_164892.1 |
CG4908-RB, transcript variant B (CG4908), mRNA |
| 0 |
0 |
0 |
5 |
2 |
NM_079395.2 |
CG9695-RA (Dab), mRNA |
| 0 |
0 |
0 |
4 |
6 |
NM_137876.1 |
CG30264-RA (CG30264), mRNA |
| 0 |
0 |
0 |
4 |
3 |
NM_169752.1 |
CG31262-RA (CG31262), mRNA |
| 0 |
0 |
0 |
3 |
5 |
NM_132794.2 |
CG18210-RA (CG18210), mRNA |
| 0 |
0 |
0 |
3 |
4 |
NM_132831.1 |
CG8184-RB (CG8184), mRNA |
| 0 |
0 |
0 |
3 |
4 |
NM_141951.1 |
CG5608-RA (CG5608), mRNA |
| 0 |
0 |
0 |
3 |
4 |
NM_131995.1 |
CG15784-RA (CG15784), mRNA |
| 0 |
0 |
0 |
3 |
3 |
NM_001014545.1 |
CG33519-RB (Unc-89), mRNA |
| 0 |
0 |
0 |
3 |
3 |
NM_057941.3 |
CG5227-RA, transcript variant A (sdk), mRNA |
| 0 |
0 |
0 |
3 |
3 |
NM_137847.2 |
CG4207-RA (bonsai), mRNA |
| 0 |
0 |
0 |
3 |
3 |
NM_137977.2 |
CG11299-RA (CG11299), mRNA |
| 0 |
0 |
0 |
3 |
2 |
NM_142098.1 |
CG8538-RA (CG8538), mRNA |
| 0 |
0 |
0 |
3 |
2 |
NM_137502.3 |
CG5323-RA (CG5323), mRNA |
| 0 |
0 |
0 |
3 |
2 |
NM_144103.1 |
CG13946-RA (CG13946), mRNA |
| 0 |
0 |
0 |
3 |
2 |
NM_134697.1 |
CG12506-RA (CG12506), mRNA |
|
| Wing Disc |
GFP
 |
Puc
 |
Caspase
 |
DAPI
 |
Merge
 |
Figure
 |
|
JNK signal
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Caspase-3 signal
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Pathways (updated: 2024/04/26)
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| KEGG Pathway |
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