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NIG-RNAi Strains Detail

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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)

Stock ID

13029R-2

Symbol

CG13029

Full Name

CG13029

CG No

CG13029

Old CG No

CG13029

Synonyms

BcDNA:AT31918, anon-WO0118547.38, CG13029

Accession No (Link to NCBI)

NM_168690.1

Inserted Chr.

lll

Insertional Mutation

Phenotype induced by Act5C-GAL4 at 28 degrees

viable

Map Viewer

Reference
[Please submit your publication]

Comment

Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)

Primer Seq. 5'

aaggcctacatggccggaccgCACTTTTGTCATTGGCAACGC

Primer Seq. 3'

aatctagaggtaccTAGTGGGTGCCTGTTTGGTTT

Predicted Fragment Size

IR fragment full Seq

0001 CACTTTTGTC ATTGGCAACG CATGTAAATC TGCTTATAAT TGATGAACAA ATTCGGAGGC 
0061 AATATGTTGT ATTACACTTT TCACGCTTTT TCCTATTTCT CAAACCAATG AGCTGCGAGT 
0121 TAATAGCACT GAACATAAGT TTCATCATCA ACATCTATGC CTGCATTCTA TCACTCATAA 
0181 TGTTGGGATA TCAGATACCA GCATTGTATC TGAATACCAC ATTCTATACG CCAAAGGATT 
0241 ATAGATACAA TCAAGGGCTA CTGGGCAACT TCATGGCCTT CATGGGAAAA CGAGGCCTCT 
0301 GGACATTTAT TTCGCCCAGC ATTAGGAGTC CTCTGCCCCA CGATGGAACT AAGTGGCAAA 
0361 CCAAACAGGC ACCCACTA

in silico PCR Fragment

0001 CACTTTTGTC ATTGGCAACG CATGTAAATC TGCTTATAAT TGATGAACAA ATTCGGAGGC 
0061 AATATGTTGT ATTACACTTT TCACGCTTTT TCCTATTTCT CAAACCAATG AGCTGCGAGT 
0121 TAATAGCACT GAACATAAGT TTCATCATCA ACATCTATGC CTGCATTCTA TCACTCATAA 
0181 TGTTGGGATA TCAGATACCA GCATTGTATC TGAATACCAC ATTCTATACG CCAAAGGATT 
0241 ATAGATACAA TCAAGGGCTA CTGGGCAACT TCATGGCCTT CATGGGAAAA CGAGGCCTCT 
0301 GGACATTTAT TTCGCCCAGC ATTAGGAGTC CTCTGCCCCA CGATGGAACT AAGTGGCAAA 
0361 CCAAACAGGC ACCCACTA

Assemble Data

<PRE>

13029R-2.IR_full       1   CACTTTTGTCATTGGCAACGCATGTAAATCTGCTTATAATTGATGAACAAATTCGGAGGC 60
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
13029R-2.in silico     1   CACTTTTGTCATTGGCAACGCATGTAAATCTGCTTATAATTGATGAACAAATTCGGAGGC 60


13029R-2.IR_full       61  AATATGTTGTATTACACTTTTCACGCTTTTTCCTATTTCTCAAACCAATGAGCTGCGAGT 120
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
13029R-2.in silico     61  AATATGTTGTATTACACTTTTCACGCTTTTTCCTATTTCTCAAACCAATGAGCTGCGAGT 120


13029R-2.IR_full       121 TAATAGCACTGAACATAAGTTTCATCATCAACATCTATGCCTGCATTCTATCACTCATAA 180
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
13029R-2.in silico     121 TAATAGCACTGAACATAAGTTTCATCATCAACATCTATGCCTGCATTCTATCACTCATAA 180


13029R-2.IR_full       181 TGTTGGGATATCAGATACCAGCATTGTATCTGAATACCACATTCTATACGCCAAAGGATT 240
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
13029R-2.in silico     181 TGTTGGGATATCAGATACCAGCATTGTATCTGAATACCACATTCTATACGCCAAAGGATT 240


13029R-2.IR_full       241 ATAGATACAATCAAGGGCTACTGGGCAACTTCATGGCCTTCATGGGAAAACGAGGCCTCT 300
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
13029R-2.in silico     241 ATAGATACAATCAAGGGCTACTGGGCAACTTCATGGCCTTCATGGGAAAACGAGGCCTCT 300


13029R-2.IR_full       301 GGACATTTATTTCGCCCAGCATTAGGAGTCCTCTGCCCCACGATGGAACTAAGTGGCAAA 360
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
13029R-2.in silico     301 GGACATTTATTTCGCCCAGCATTAGGAGTCCTCTGCCCCACGATGGAACTAAGTGGCAAA 360


13029R-2.IR_full       361 CCAAACAGGCACCCACTA 378
                           ||||||||||||||||||
13029R-2.in silico     361 CCAAACAGGCACCCACTA 378

</PRE>

Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)

Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch

cv	0mm	1mm	2mm	3mm	target transcript	off target name
100	360	0	0	0	NM_168690.1	CG13029-RB, transcript variant B (CG13029), mRNA
100	360	0	0	0	NM_140671.1	CG13029-RC, transcript variant C (CG13029), mRNA
0	0	4	6	8	NM_143168.1	CG17197-RA (CG17197), mRNA
0	0	2	7	5	NM_137456.2	CG5733-RA (CG5733), mRNA
0	0	2	2	6	NM_137064.2	CG10808-RA (synaptogyrin), mRNA
0	0	1	5	3	NM_165176.2	CG31782-RB, transcript variant B (CG31782), mRNA
0	0	1	5	3	NM_165175.1	CG31782-RA, transcript variant A (CG31782), mRNA
0	0	1	4	8	NM_001014603.1	CG32490-RJ, transcript variant J (cpx), mRNA
0	0	1	4	8	NM_001014602.1	CG32490-RK, transcript variant K (cpx), mRNA
0	0	1	4	8	NM_164327.2	CG32490-RA, transcript variant A (cpx), mRNA
0	0	1	4	8	NM_164330.2	CG32490-RC, transcript variant C (cpx), mRNA
0	0	1	4	8	NM_164331.2	CG32490-RH, transcript variant H (cpx), mRNA
0	0	1	4	8	NM_164329.2	CG32490-RI, transcript variant I (cpx), mRNA
0	0	1	4	8	NM_164328.2	CG32490-RG, transcript variant G (cpx), mRNA
0	0	1	3	3	NM_140258.2	CG7264-RA (CG7264), mRNA
0	0	1	3	2	NM_143153.2	CG4719-RA (tankyrase), mRNA
0	0	1	2	5	NM_132598.2	CG3989-RA (ade5), mRNA
0	0	1	2	4	NM_057618.2	CG3399-RA, transcript variant A (capu), mRNA
0	0	1	2	3	NM_135485.4	CG4619-RA (CG4619), mRNA
0	0	1	2	2	NM_176005.1	CG5853-RA (CG5853), mRNA
0	0	0	7	2	NM_136684.1	CG1675-RA (CG1675), mRNA
0	0	0	5	6	NM_132993.2	CG8465-RA, transcript variant A (l(1)G0222), mRNA
0	0	0	5	6	NM_167569.1	CG8465-RB, transcript variant B (l(1)G0222), mRNA
0	0	0	5	6	NM_167570.1	CG8465-RC, transcript variant C (l(1)G0222), mRNA
0	0	0	5	2	NM_140937.2	CG17149-RA, transcript variant A (CG17149), mRNA
0	0	0	5	2	NM_168835.1	CG17149-RB, transcript variant B (CG17149), mRNA
0	0	0	4	5	NM_167401.1	CG1517-RB, transcript variant B (na), mRNA
0	0	0	4	5	NM_167402.1	CG1517-RC, transcript variant C (na), mRNA
0	0	0	4	4	NM_057262.2	CG1828-RA, transcript variant A (dre4), mRNA
0	0	0	4	4	NM_167922.1	CG1828-RB, transcript variant B (dre4), mRNA

Pathways (updated: 2024/04/26)

KEGG Pathway

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