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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 12015R-1 
 Symbol RabX6  Full Name RabX6 
 CG No CG12015  Old CG No CG12015 
 Synonyms CG12015, DmRabX6, RabX6 
 Accession No (Link to NCBI)  
 Inserted Chr. lll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees early pupal lethal 
 Map Viewer
 Reference
[Please submit your publication]
 
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgCACGATGCGCATACCCAAACA 
 Primer Seq. 3'
aatctagaggtaccCACGGAACATCTCCTCCACAC 
 Predicted Fragment Size
500 
 IR fragment full Seq
 
 in silico PCR Fragment
 
 Assemble Data

12015R-1.IR full       1   CACGATGCGCATACCCAAACAGAAGGTGATCCTGTGCGGAGACTACGGAGTGGGCAAGAG 60
                           ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
12015R-1.in silico     1   CACGATGCGCATACCCAAACAAAAGGTGATCCTGTGCGGCGACTACGGAGTGGGCAAGAG 60


12015R-1.IR full       61  CTCCCTGTTCCGGCGCTTCGCCACCAACACCTTCATCACGGATACGGACAGGAAATCCAC 120
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
12015R-1.in silico     61  CTCCCTGTTCCGGCGCTTCGCCACCAACACCTTCATCACGGATACGGACAGGAAATCCAC 120


12015R-1.IR full       121 GTTGGGACTGGACCACATCGATAGGGAATACAGTGTGAATGAAAAGCAAATCAAGCTCCA 180
                           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
12015R-1.in silico     121 GTTGGGACTGGACCACATCGATAGGGAATACAGTGTGAATGAAAAGCAGATCAAGCTCCA 180


12015R-1.IR full       181 ACTCTGGGACACCGGTGGCATGGAGCGTGTGGCCTCGGTCACATCCTCGTACTACAAGTT 240
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
12015R-1.in silico     181 ACTCTGGGACACCGGTGGCATGGAGCGTGTGGCCTCGGTCACATCCTCGTACTACAAGTT 240


12015R-1.IR full       241 CGCCGAGGGAGCCATCCTGGTCTTTGCTTTGGACAACGCCGCTTCGTTCCACTCGCTGTC 300
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
12015R-1.in silico     241 CGCCGAGGGAGCCATCCTGGTCTTTGCTTTGGACAACGCCGCTTCGTTCCACTCGCTGTC 300


12015R-1.IR full       301 GCAGCACTTGCTGGACATTGTGACCTATGCAGAGAATGCCAAGATCTTCATCTGTGGCAA 360
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
12015R-1.in silico     301 GCAGCACTTGCTGGACATTGTGACCTATGCAGAGAATGCCAAGATCTTCATCTGTGGCAA 360


12015R-1.IR full       361 TAAGAGCGATCTGGATGGCAGGGAGCCGGAGGTCAGCGATGAGGAAGTGGAGGCCTTCTG 420
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
12015R-1.in silico     361 TAAGAGCGATCTGGATGGCAGGGAGCCGGAGGTCAGCGATGAGGAAGTGGAGGCCTTCTG 420


12015R-1.IR full       421 CGAGCAGTGCCACTCACTGATCAGTGCCACGTACAAGACCTCCTGTCGCAGCGGCGCCGG 480
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
12015R-1.in silico     421 CGAGCAGTGCCACTCACTGATCAGTGCCACGTACAAGACCTCCTGTCGCAGCGGCGCCGG 480


12015R-1.IR full       481 TGTGGAGGAGATGTTCCGTG 500
                           ||||||||||||||||||||
12015R-1.in silico     481 TGTGGAGGAGATGTTCCGTG 500

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
 

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