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NIG-RNAi Strains Detail

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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)

Stock ID

11915R-1

Symbol

CG11915

Full Name

CG11915

CG No

CG11915

Old CG No

CG11915

Synonyms

CG11915

Accession No (Link to NCBI)

NM_140674.2

Inserted Chr.

Insertional Mutation

Phenotype induced by Act5C-GAL4 at 28 degrees

pupal lethal

Map Viewer

Reference
[Please submit your publication]

Comment

Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)

Primer Seq. 5'

aaggcctacatggccggaccgGCGAGCTACTATTCTCGCTGC

Primer Seq. 3'

aatctagaggtaccTAGCTGTCTGCGTTCGGCTTC

Predicted Fragment Size

IR fragment full Seq

0001 GCGAGCTACT ATTCTCGCTG CTAATTGGAT ACCTAGGTGC CCTGGAATTC GCCTTTGTGG 
0061 cGCGCCATCT ATACCACTGG ACTTTCCAAC ATCCCGGCGA TTCTTCTGTA GATGCAGCAG 
0121 CTGACGCAGA AGAATTGCCT CGCATGCGAG AGCGATTGGA TAAGCAGATC AAGGAGGCGG 
0181 CGGAAAGGGA AGCCCTGGCA GGNAACCAAT GTCATGCAGG ATGGTGTCCT ATATGTCAAT 
0241 GGAATACGAG TAGATCCTGC TGGAGATAAA AGACAAGCTT TGGCAGCCGA ACTGGCACGT 
0301 CAACAGCAAA TTGAAGCCGA TACGAGGCGT CAGCTGGCCG AAGCCGAGGC CAAGCTGGTA 
0361 GAAGAAAGAC TACGAGTCCA GAGGGAGAAA GAGGAATCGG AGGAGCAGCA GAGAAAGCTC 
0421 GTAGAGGCGG AAAGACAGCG CGAAAGAGAG CAGGCGGAGA AAGAACTGCA GGAACAAAGA 
0481 GAAGCCGAAC GCAGACAGCT A

in silico PCR Fragment

0001 GCGAGCTACT ATTCTCGCTG CTAATTGGAT ACCTAGGTGC CCTGGAATTC GCCTTTGTGG 
0061 CGCGCCATCT ATACCACTGG ACTTTCCAAC ATCCCGGCGA TTCTTCTGTA GATGCAGCAG 
0121 CTGACGCAGA AGAATTGCCT CGCATGCGAG AGCGATTGGA TAAGCAGATC AAGGAGGCGG 
0181 CGGAAAGGGA AGCCCTGGCA GG-AACCAAT GTCATGCAGG ATGGTGTCCT ATATGTCAAT 
0241 GGAATACGAG TAGATCCTGC TGGAGATAAA AGACAAGCTT TGGCAGCCGA ACTGGCACGT 
0301 CAACAGCAAA TTGAAGCCGA TACGAGGCGT CAGCTGGCCG AAGCCGAGGC CAAGCTGGTA 
0361 GAAGAAAGAC TACGAGTCCA GAGGGAGAAA GAGGAATCGG AGGAGCAGCA GAGAAAGCTC 
0421 GTAGAGGCGG AAAGACAGCG CGAAAGAGAG CAGGCGGAGA AAGAACTGCA GGAACAAAGA 
0481 GAAGCCGAAC GCAGACAGCT A

Assemble Data

<PRE>

11915R-1.IR_full       1   GCGAGCTACTATTCTCGCTGCTAATTGGATACCTAGGTGCCCTGGAATTCGCCTTTGTGG 60
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11915R-1.in silico     1   GCGAGCTACTATTCTCGCTGCTAATTGGATACCTAGGTGCCCTGGAATTCGCCTTTGTGG 60


11915R-1.IR_full       61  CGCGCCATCTATACCACTGGACTTTCCAACATCCCGGCGATTCTTCTGTAGATGCAGCAG 120
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11915R-1.in silico     61  CGCGCCATCTATACCACTGGACTTTCCAACATCCCGGCGATTCTTCTGTAGATGCAGCAG 120


11915R-1.IR_full       121 CTGACGCAGAAGAATTGCCTCGCATGCGAGAGCGATTGGATAAGCAGATCAAGGAGGCGG 180
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11915R-1.in silico     121 CTGACGCAGAAGAATTGCCTCGCATGCGAGAGCGATTGGATAAGCAGATCAAGGAGGCGG 180


11915R-1.IR_full       181 CGGAAAGGGAAGCCCTGGCAGG<span class="snp"><tt>N</tt></span>AACCAATGTCATGCAGGATGGTGTCCTATATGTCAAT 240
                           ||||||||||||||||||||||<span class="snp"><tt>&nbsp;</tt></span>|||||||||||||||||||||||||||||||||||||
11915R-1.in silico     181 CGGAAAGGGAAGCCCTGGCAGG<span class="snp"><tt>-</tt></span>AACCAATGTCATGCAGGATGGTGTCCTATATGTCAAT 240


11915R-1.IR_full       241 GGAATACGAGTAGATCCTGCTGGAGATAAAAGACAAGCTTTGGCAGCCGAACTGGCACGT 300
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11915R-1.in silico     241 GGAATACGAGTAGATCCTGCTGGAGATAAAAGACAAGCTTTGGCAGCCGAACTGGCACGT 300


11915R-1.IR_full       301 CAACAGCAAATTGAAGCCGATACGAGGCGTCAGCTGGCCGAAGCCGAGGCCAAGCTGGTA 360
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11915R-1.in silico     301 CAACAGCAAATTGAAGCCGATACGAGGCGTCAGCTGGCCGAAGCCGAGGCCAAGCTGGTA 360


11915R-1.IR_full       361 GAAGAAAGACTACGAGTCCAGAGGGAGAAAGAGGAATCGGAGGAGCAGCAGAGAAAGCTC 420
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11915R-1.in silico     361 GAAGAAAGACTACGAGTCCAGAGGGAGAAAGAGGAATCGGAGGAGCAGCAGAGAAAGCTC 420


11915R-1.IR_full       421 GTAGAGGCGGAAAGACAGCGCGAAAGAGAGCAGGCGGAGAAAGAACTGCAGGAACAAAGA 480
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11915R-1.in silico     421 GTAGAGGCGGAAAGACAGCGCGAAAGAGAGCAGGCGGAGAAAGAACTGCAGGAACAAAGA 480


11915R-1.IR_full       481 GAAGCCGAACGCAGACAGCTA 501
                           |||||||||||||||||||||
11915R-1.in silico     481 GAAGCCGAACGCAGACAGCTA 501

</PRE>

Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)

Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch

cv	0mm	1mm	2mm	3mm	target transcript	off target name
100	482	0	0	7	NM_140674.2	CG11915-RA (CG11915), mRNA
0.2	1	4	3	3	NM_001032023.1	CG11779-RC, transcript variant C (CG11779), mRNA
0.2	1	4	3	3	NM_142528.2	CG5835-RA (CG5835), mRNA
0	0	4	2	2	NM_132909.1	CG9782-RA (CG9782), mRNA
0	0	3	3	3	NM_167595.3	CG12348-RE, transcript variant E (Sh), mRNA
0	0	3	3	3	NM_167594.2	CG12348-RC, transcript variant C (Sh), mRNA
0	0	2	2	5	NM_165880.1	CG8841-RC, transcript variant C (CG8841), mRNA
0	0	2	2	5	NM_136916.2	CG8841-RA, transcript variant A (CG8841), mRNA
0	0	2	2	5	NM_165879.1	CG8841-RB, transcript variant B (CG8841), mRNA
0	0	2	2	4	NM_168346.1	CG32043-RB, transcript variant B (CG32043), mRNA
0	0	2	2	4	NM_140064.2	CG32043-RA, transcript variant A (CG32043), mRNA
0	0	1	6	4	NM_142540.1	CG14280-RA (CG14280), mRNA
0	0	1	5	5	NM_079253.3	CG6494-RA, transcript variant A (h), mRNA
0	0	1	5	5	NM_001014577.1	CG6494-RB, transcript variant B (h), mRNA
0	0	1	4	5	NM_135908.2	CG18482-RA (CG18482), mRNA
0	0	1	4	4	NM_165511.2	CG30385-RA (CG30385), mRNA
0	0	1	4	2	NM_132972.1	CG12995-RB, transcript variant B (CG12995), mRNA
0	0	1	4	2	NM_167561.1	CG12995-RA, transcript variant A (CG12995), mRNA
0	0	1	3	5	NM_169025.1	CG2534-RB, transcript variant B (cno), mRNA
0	0	1	3	5	NM_079508.2	CG2534-RA, transcript variant A (cno), mRNA
0	0	1	3	5	NM_080004.2	CG2534-RA, transcript variant A (cno), mRNA, ankyrin repeat, tyrosine kinase CG18247-RA (shark), mRNA
0	0	1	3	4	NM_164404.2	CG4629-RB, transcript variant B (CG4629), mRNA
0	0	1	3	4	NM_134720.2	CG4629-RA, transcript variant A (CG4629), mRNA
0	0	1	3	4	NM_205888.1	CG4629-RC, transcript variant C (CG4629), mRNA
0	0	1	3	3	NM_132092.2	CG3869-RA, transcript variant A (Marf), mRNA
0	0	1	3	3	NM_206634.1	CG3869-RC, transcript variant C (Marf), mRNA
0	0	1	3	3	NM_206635.2	CG3869-RB, transcript variant B (Marf), mRNA
0	0	0	7	9	NM_140067.1	CG3654-RD (CG3654), mRNA
0	0	0	7	5	NM_165915.1	CG8815-RB, transcript variant B (Sin3A), mRNA
0	0	0	7	5	NM_165916.1	CG8815-RC, transcript variant C (Sin3A), mRNA

Pathways (updated: 2024/04/26)

KEGG Pathway

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