| Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
| Stock ID |
11641R-2 |
| Symbol |
pdm3 |
Full Name |
pou domain motif 3 |
| CG No |
CG11641 |
Old CG No |
CG11641 |
| Synonyms |
CG11641, BcDNA:AT16994, pdm3 |
| Accession No (Link to NCBI) |
NM_136533.1 |
| Inserted Chr. |
ll |
| Insertional Mutation |
lethal |
| Phenotype induced by Act5C-GAL4 at 28 degrees |
lethal |
| Map Viewer |
|
Reference
[Please submit your publication]
|
Nitta Y, Yamazaki D, Sugie A, Hiroi M, Tabata T.<br> DISCO Interacting Protein 2 regulates axonal bifurcation and guidance of Drosophila mushroom body neurons.<br> Dev Biol (2017) 421(2) 233-244
[
PubMed ID = 27908785
]
[
RRC reference
]
Tiwari P, Kumar A, Das RN, Malhotra V, VijayRaghavan K.<br> A Tendon Cell Specific RNAi Screen Reveals Novel Candidates Essential for Muscle Tendon Interaction.<br> PLoS One (2015) 10(10) e0140976
[
PubMed ID = 26488612
]
[
RRC reference
]
|
| Comment |
balanced with SM6a, Cy
|
| Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
| Primer Seq. 5' |
aaggcctacatggccggaccgGCTGATTCTTGCCTCCGGACA |
| Primer Seq. 3' |
aatctagaggtaccAGTGCGGCAGGTGACCAATTC |
| Predicted Fragment Size |
500 |
| IR fragment full Seq |
0001 GCTGATTCTT GCCTCCGGAC AGCTGGTGCA GGGcGTCCAG GGTGCCCAGC TGCTCATACC
0061 CACGGCCCAA GGcATTGCCG NGCAGACCAT CCTGACCATT CCGGTGAGTC CACAGATCCC
0121 CACCACGGAA CAGTTTCTGC CCAACGCGTT CGGCGCCTTT GCGAGCTACC AGCAACAGCA
0181 ACAACAGCAG CAGCAGCAGC GGGANCTTGC TACCGCCATC GCTGGCCGCA CTGCAGCATG
0241 CCACTGCCCT GCCCCAGTTG GCACAGACAC CCACGAATTT ACTCAAGCCC AATCTGTTTT
0301 CGACGGGCGT GCAACAGCTG CTCACGGCTT TGCATCCGGA ACTGTTTGCT GCGGCAGCTG
0361 CAACACATCA GCAGCAGCAG CAGCAACAGC AGCAGCAGGT CCAGCAGCAG CGGGAGAGGG
0421 AAAGGGAGAG AGAACGGGAA CGGGAACGAG AACGGGAGCG GGAACGGGAG CAGCACTTGG
0481 GAATTGGTCA CCTgNCGCAC T |
| in silico PCR Fragment |
0001 GCTGATTCTT GCCTCCGGAC AGCTGGTGCA GGGCGTCCAG GGTGCCCAGC TGCTCATACC
0061 CACGGCCCAA GGCATTGCCG TGCAGACCAT CCTGACCATT CCGGTGAGTC CACAGATCCC
0121 CACCACGGAA CAGTTTCTGC CCAACGCGTT CGGCGCCTTT GCGAGCTACC AGCAACAGCA
0181 ACAACAGCAG CAGCAGCAGC GGGA-CTTGC TACCGCCATC GCTGGCCGCA CTGCAGCATG
0241 CCACTGCCCT GCCCCAGTTG GCACAGACAC CCACGAATTT ACTCAAGCCC AATCTGTTTT
0301 CGACGGGCGT GCAACAGCTG CTCACGGCTT TGCATCCGGA ACTGTTTGCT GCGGCAGCTG
0361 CAACACATCA GCAGCAGCAG CAGCAACAGC AGCAGCAGGT CCAGCAGCAG CGGGAGAGGG
0421 AAAGGGAGAG AGAACGGGAA CGGGAACGAG AACGGGAGCG GGAACGGGAG CAGCACTTGG
0481 GAATTGGTCA CCTGCCGCAC T |
| Assemble Data |
<PRE>
11641R-2.IR_full 1 GCTGATTCTTGCCTCCGGACAGCTGGTGCAGGGCGTCCAGGGTGCCCAGCTGCTCATACC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11641R-2.in silico 1 GCTGATTCTTGCCTCCGGACAGCTGGTGCAGGGCGTCCAGGGTGCCCAGCTGCTCATACC 60
11641R-2.IR_full 61 CACGGCCCAAGGCATTGCCG<span class="snp"><tt>N</tt></span>GCAGACCATCCTGACCATTCCGGTGAGTCCACAGATCCC 120
||||||||||||||||||||<span class="snp"><tt> </tt></span>|||||||||||||||||||||||||||||||||||||||
11641R-2.in silico 61 CACGGCCCAAGGCATTGCCG<span class="snp"><tt>T</tt></span>GCAGACCATCCTGACCATTCCGGTGAGTCCACAGATCCC 120
11641R-2.IR_full 121 CACCACGGAACAGTTTCTGCCCAACGCGTTCGGCGCCTTTGCGAGCTACCAGCAACAGCA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11641R-2.in silico 121 CACCACGGAACAGTTTCTGCCCAACGCGTTCGGCGCCTTTGCGAGCTACCAGCAACAGCA 180
11641R-2.IR_full 181 ACAACAGCAGCAGCAGCAGCGGGA<span class="snp"><tt>N</tt></span>CTTGCTACCGCCATCGCTGGCCGCACTGCAGCATG 240
||||||||||||||||||||||||<span class="snp"><tt> </tt></span>|||||||||||||||||||||||||||||||||||
11641R-2.in silico 181 ACAACAGCAGCAGCAGCAGCGGGA<span class="snp"><tt>-</tt></span>CTTGCTACCGCCATCGCTGGCCGCACTGCAGCATG 240
11641R-2.IR_full 241 CCACTGCCCTGCCCCAGTTGGCACAGACACCCACGAATTTACTCAAGCCCAATCTGTTTT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11641R-2.in silico 241 CCACTGCCCTGCCCCAGTTGGCACAGACACCCACGAATTTACTCAAGCCCAATCTGTTTT 300
11641R-2.IR_full 301 CGACGGGCGTGCAACAGCTGCTCACGGCTTTGCATCCGGAACTGTTTGCTGCGGCAGCTG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11641R-2.in silico 301 CGACGGGCGTGCAACAGCTGCTCACGGCTTTGCATCCGGAACTGTTTGCTGCGGCAGCTG 360
11641R-2.IR_full 361 CAACACATCAGCAGCAGCAGCAGCAACAGCAGCAGCAGGTCCAGCAGCAGCGGGAGAGGG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11641R-2.in silico 361 CAACACATCAGCAGCAGCAGCAGCAACAGCAGCAGCAGGTCCAGCAGCAGCGGGAGAGGG 420
11641R-2.IR_full 421 AAAGGGAGAGAGAACGGGAACGGGAACGAGAACGGGAGCGGGAACGGGAGCAGCACTTGG 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11641R-2.in silico 421 AAAGGGAGAGAGAACGGGAACGGGAACGAGAACGGGAGCGGGAACGGGAGCAGCACTTGG 480
11641R-2.IR_full 481 GAATTGGTCACCTG<span class="snp"><tt>N</tt></span>CGCACT 501
||||||||||||||<span class="snp"><tt> </tt></span>||||||
11641R-2.in silico 481 GAATTGGTCACCTG<span class="snp"><tt>C</tt></span>CGCACT 501
</PRE>
|
| Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
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Pathways (updated: 2024/04/26)
|
| KEGG Pathway |
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