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NIG-RNAi Strains Detail

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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)

Stock ID

11451R-1

Symbol

CG11451

Full Name

CG11451

CG No

CG11451

Old CG No

CG11451

Synonyms

CG11451

Accession No (Link to NCBI)

NM_141002.1

Inserted Chr.

lll

Insertional Mutation

Phenotype induced by Act5C-GAL4 at 28 degrees

semi-lethal

Map Viewer

Reference
[Please submit your publication]

Comment

Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)

Primer Seq. 5'

aaggcctacatggccggaccgGCGTAAGGTGCCGACCAAGGA

Primer Seq. 3'

aatctagaggtaccCGATTTGGTGGCGGTTGACGA

Predicted Fragment Size

IR fragment full Seq

0001 GCGTAAGGTG CCGACCAAGG AAGATGAGGC GACCACAACA ACGTCCGCGA TCAAACAACA 
0061 AATCAAGCGA CGCATCAGTT TCAGTGGCAA GAAGTCCGTG AGGGAATTCG TAAACACCAA 
0121 GGAGACCAAC AACTGGGACG ACTCGTACGA GGTGTCGGAA CACCATGCTG AGGACAGCTC 
0181 GGGATCGAAG TGCTGCAGCA CAGGATCAGC ATCAGTAGCG AGGGTTTCCG AACATGCCGA 
0241 CAAGGAGAAC ATTCCCCTGC CCAGCCACTG CGAGCGGGAA CATGTCGATC TGTCCGTGAA 
0301 TCTGCAGGCC AGCGTGGATT TCACCCTGCT GCCCTGCGAA ATGATGGACA AATCGAGGAA 
0361 GACATCCTCA ATCTCTGCTG TGTCCTTTTG CATGACCTCC GAGGAGCGAA AACTGTTGCA 
0421 AAGCAGTCTC AGCGACCGCC AGCTGGTAGA CAAGACCATG GATCTGATAT CCGGATCTCT 
0481 CGTCAACCGC CACCAAATCG

in silico PCR Fragment

0001 GCGTAAGGTG CCGACCAAGG AAGATGAGGC GACCACAACA ACGTCCGCGA TCAAACAACA 
0061 AATCAAGCGA CGCATCAGTT TCAGTGGCAA GAAGTCCGTG AGGGAATTCG TAAACACCAA 
0121 GGAGACCAAC AACTGGGACG ACTCGTACGA GGTGTCGGAA CACCATGCTG AGGACAGCTC 
0181 GGGATCGAAG TGCTGCAGCA CAGGATCAGC ATCAGTAGCG AGGGTTTCCG AACATGCCGA 
0241 CAAGGAGAAC ATTCCCCTGC CCAGCCACTG CGAGCGGGAA CATGTCGATC TGTCCGTGAA 
0301 TCTGCAGGCC AGCGTGGATT TCACCCTGCT GCCCTGCGAA ATGATGGACA AATCGAGGAA 
0361 GACATCCTCA ATCTCTGCTG TGTCCTTTTG CATGACCTCC GAGGAGCGAA AACTGTTGCA 
0421 AAGCAGTCTC AGCGACCGCC AGCTGGTAGA CAAGACCATG GATCTGATAT CCGGATCTCT 
0481 CGTCAACCGC CACCAAATCG

Assemble Data

<PRE>

11451R-1.IR_full       1   GCGTAAGGTGCCGACCAAGGAAGATGAGGCGACCACAACAACGTCCGCGATCAAACAACA 60
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11451R-1.in silico     1   GCGTAAGGTGCCGACCAAGGAAGATGAGGCGACCACAACAACGTCCGCGATCAAACAACA 60


11451R-1.IR_full       61  AATCAAGCGACGCATCAGTTTCAGTGGCAAGAAGTCCGTGAGGGAATTCGTAAACACCAA 120
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11451R-1.in silico     61  AATCAAGCGACGCATCAGTTTCAGTGGCAAGAAGTCCGTGAGGGAATTCGTAAACACCAA 120


11451R-1.IR_full       121 GGAGACCAACAACTGGGACGACTCGTACGAGGTGTCGGAACACCATGCTGAGGACAGCTC 180
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11451R-1.in silico     121 GGAGACCAACAACTGGGACGACTCGTACGAGGTGTCGGAACACCATGCTGAGGACAGCTC 180


11451R-1.IR_full       181 GGGATCGAAGTGCTGCAGCACAGGATCAGCATCAGTAGCGAGGGTTTCCGAACATGCCGA 240
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11451R-1.in silico     181 GGGATCGAAGTGCTGCAGCACAGGATCAGCATCAGTAGCGAGGGTTTCCGAACATGCCGA 240


11451R-1.IR_full       241 CAAGGAGAACATTCCCCTGCCCAGCCACTGCGAGCGGGAACATGTCGATCTGTCCGTGAA 300
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11451R-1.in silico     241 CAAGGAGAACATTCCCCTGCCCAGCCACTGCGAGCGGGAACATGTCGATCTGTCCGTGAA 300


11451R-1.IR_full       301 TCTGCAGGCCAGCGTGGATTTCACCCTGCTGCCCTGCGAAATGATGGACAAATCGAGGAA 360
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11451R-1.in silico     301 TCTGCAGGCCAGCGTGGATTTCACCCTGCTGCCCTGCGAAATGATGGACAAATCGAGGAA 360


11451R-1.IR_full       361 GACATCCTCAATCTCTGCTGTGTCCTTTTGCATGACCTCCGAGGAGCGAAAACTGTTGCA 420
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11451R-1.in silico     361 GACATCCTCAATCTCTGCTGTGTCCTTTTGCATGACCTCCGAGGAGCGAAAACTGTTGCA 420


11451R-1.IR_full       421 AAGCAGTCTCAGCGACCGCCAGCTGGTAGACAAGACCATGGATCTGATATCCGGATCTCT 480
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11451R-1.in silico     421 AAGCAGTCTCAGCGACCGCCAGCTGGTAGACAAGACCATGGATCTGATATCCGGATCTCT 480


11451R-1.IR_full       481 CGTCAACCGCCACCAAATCG 500
                           ||||||||||||||||||||
11451R-1.in silico     481 CGTCAACCGCCACCAAATCG 500

</PRE>

Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)

Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch

cv	0mm	1mm	2mm	3mm	target transcript	off target name
100	482	0	0	0	NM_141002.1	CG11451-RA (CG11451), mRNA
0	0	4	4	3	NM_132061.1	CG5937-RA (CG5937), mRNA
0	0	3	3	2	NM_168487.1	CG32096-RB, transcript variant B (rols), mRNA
0	0	3	3	2	NM_140285.2	CG32096-RD, transcript variant D (rols), mRNA
0	0	3	3	2	NM_168490.1	CG32096-RE, transcript variant E (rols), mRNA
0	0	3	3	2	NM_168488.1	CG32096-RA, transcript variant A (rols), mRNA
0	0	3	3	2	NM_168489.1	CG32096-RC, transcript variant C (rols), mRNA
0	0	2	3	7	NM_140898.3	CG32217-RA (Su(Tpl)), mRNA
0	0	2	3	5	NM_132660.2	CG1716-RA (CG1716), mRNA
0	0	2	3	2	NM_079163.2	CG1960-RA, transcript variant A (mu2), mRNA
0	0	2	3	2	NM_167927.1	CG1960-RB, transcript variant B (mu2), mRNA
0	0	2	3	2	NM_136904.1	CG13171-RA (CG13171), mRNA
0	0	1	10	7	NM_079488.3	CG9054-RA (Ddx1), mRNA
0	0	1	4	3	NM_139962.3	CG7163-RB, transcript variant B (mkg-p), mRNA
0	0	1	4	3	NM_176299.1	CG33057-RA, transcript variant A (CG33057), mRNA
0	0	1	4	3	NM_168272.1	CG7163-RA, transcript variant A (mkg-p), mRNA
0	0	1	3	17	NM_166019.1	CG18076-RH, transcript variant H (shot), mRNA
0	0	1	3	16	NM_166015.1	CG18076-RG, transcript variant G (shot), mRNA
0	0	1	3	16	NM_166016.1	CG18076-RB, transcript variant B (shot), mRNA
0	0	1	3	16	NM_079009.2	CG18076-RA, transcript variant A (shot), mRNA
0	0	1	3	13	NM_166018.1	CG18076-RC, transcript variant C (shot), mRNA
0	0	1	3	13	NM_166017.1	CG18076-RE, transcript variant E (shot), mRNA
0	0	1	3	6	NM_143009.1	CG6607-RA (CG6607), mRNA
0	0	1	3	4	NM_137393.2	CG4924-RA (icln), mRNA
0	0	1	3	3	NM_141277.2	CG1172-RA (CG1172), mRNA
0	0	1	3	2	NM_205921.1	CG13788-RB, transcript variant B (Gr28b), mRNA
0	0	1	2	6	NM_141831.1	CG5342-RA (CG5342), mRNA
0	0	1	2	4	NM_130725.2	CG15239-RA (CG15239), mRNA
0	0	1	2	4	NM_058071.3	CG7885-RA, transcript variant A (RpII33), mRNA
0	0	0	6	5	NM_136539.1	CG11669-RA (CG11669), mRNA

Pathways (updated: 2024/04/26)

KEGG Pathway

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