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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 11395R-3 
 Symbol CG11395  Full Name CG11395 
 CG No CG11395  Old CG No CG11395 
 Synonyms CG11395 
 Accession No (Link to NCBI) NM_137351.2 
 Inserted Chr. ll 
 Insertional Mutation  lethal 
 Phenotype induced by Act5C-GAL4 at 28 degrees viable 
 Map Viewer
 Reference
[Please submit your publication] 		Tiwari P, Kumar A, Das RN, Malhotra V, VijayRaghavan K.<br> A Tendon Cell Specific RNAi Screen Reveals Novel Candidates Essential for Muscle Tendon Interaction.<br> PLoS One (2015) 10(10) e0140976 [ PubMed ID = 26488612 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5' 
aaggcctacatggccggaccgTACTACGTGGAAAACGGCGGA 
 Primer Seq. 3' 
aatctagaggtaccCGAGGCTGTAGGGTATTTGGA 
 Predicted Fragment Size 
500 
 IR fragment full Seq 
0001 TACTACGTGG AAAACGGCGG ACATGGATAT CCGAACCATC ATCGCCACCA TGGTCATCAC 
0061 GTACATGGGT CAGGATATGG CCCAGGATCC ATTGGACCAC CTCCCTTTGT CTTCGGTCGT 
0121 TTTCCACCGC CTCCTTCGTA TTATCCAGAT AATCAACCAT CAGGAGGTCG TCAACCGTAT 
0181 TATCCGAACG TCGGTGCAGT TCAAGGACAA CCTGGCAGTC AATTTCACCA ACATGGAGGT 
0241 GGTTTTCATA GAGGACAACA GGAATATCCC TACCCTGTAG GTGATTTTAA CAGGGGACAT 
0301 CCAGGCCTCC AGCAACCGGG TGGAGATTTC AACAGGGGCC AACCAGGTTT TCAGCAGCCA 
0361 GGAAATGAAT TCAATAGACC ACAACCATCT GGAAGGGCGC CAGGACATCA ACAATCTGGC 
0421 AGCCATGAGG AGCTACCCAC CTACCCTCGA GGATTGGAAC CCCAGCAGCC GGGTGGTGAT 
0481 CCAAATACCC TACAGCCTCG  
 in silico PCR Fragment 
0001 TACTACGTGG AAAACGGCGG ACATGGATAT CCGAACCATC ATCGCCACCA TGGTCATCAC 
0061 GTACATGGGT CAGGATATGG CCCAGGATCC ATTGGACCAC CTCCCTTTGT CTTCGGTCGT 
0121 TTTCCACCGC CTCCTTCGTA TTATCCAGAT AATCAACCAT CAGGAGGTCG TCAACCGTAT 
0181 TATCCGAACG TCGGTGCAGT TCAAGGACAA CCTGGCAGTC AATTTCACCA ACATGGAGGT 
0241 GGTTTTCATA GAGGACAACA GGAATATCCC TACCCTGTAG GTGATTTTAA CAGGGGACAT 
0301 CCAGGCCTCC AGCAACCGGG TGGAGATTTC AACAGGGGCC AACCAGGTTT TCAGCAGCCA 
0361 GGAAATGAAT TCAATAGACC ACAACCATCT GGAAGGGCGC CAGGACATCA ACAATCTGGC 
0421 AGCCATGAGG AGCTACCCAC CTACCCTCGA GGATTGGAAC CCCAGCAGCC GGGTGGTGAT 
0481 CCAAATACCC TACAGCCTCG  
 Assemble Data 
<PRE>

11395R-3.IR_full       1   TACTACGTGGAAAACGGCGGACATGGATATCCGAACCATCATCGCCACCATGGTCATCAC 60
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11395R-3.in silico     1   TACTACGTGGAAAACGGCGGACATGGATATCCGAACCATCATCGCCACCATGGTCATCAC 60


11395R-3.IR_full       61  GTACATGGGTCAGGATATGGCCCAGGATCCATTGGACCACCTCCCTTTGTCTTCGGTCGT 120
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11395R-3.in silico     61  GTACATGGGTCAGGATATGGCCCAGGATCCATTGGACCACCTCCCTTTGTCTTCGGTCGT 120


11395R-3.IR_full       121 TTTCCACCGCCTCCTTCGTATTATCCAGATAATCAACCATCAGGAGGTCGTCAACCGTAT 180
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11395R-3.in silico     121 TTTCCACCGCCTCCTTCGTATTATCCAGATAATCAACCATCAGGAGGTCGTCAACCGTAT 180


11395R-3.IR_full       181 TATCCGAACGTCGGTGCAGTTCAAGGACAACCTGGCAGTCAATTTCACCAACATGGAGGT 240
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11395R-3.in silico     181 TATCCGAACGTCGGTGCAGTTCAAGGACAACCTGGCAGTCAATTTCACCAACATGGAGGT 240


11395R-3.IR_full       241 GGTTTTCATAGAGGACAACAGGAATATCCCTACCCTGTAGGTGATTTTAACAGGGGACAT 300
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11395R-3.in silico     241 GGTTTTCATAGAGGACAACAGGAATATCCCTACCCTGTAGGTGATTTTAACAGGGGACAT 300


11395R-3.IR_full       301 CCAGGCCTCCAGCAACCGGGTGGAGATTTCAACAGGGGCCAACCAGGTTTTCAGCAGCCA 360
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11395R-3.in silico     301 CCAGGCCTCCAGCAACCGGGTGGAGATTTCAACAGGGGCCAACCAGGTTTTCAGCAGCCA 360


11395R-3.IR_full       361 GGAAATGAATTCAATAGACCACAACCATCTGGAAGGGCGCCAGGACATCAACAATCTGGC 420
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11395R-3.in silico     361 GGAAATGAATTCAATAGACCACAACCATCTGGAAGGGCGCCAGGACATCAACAATCTGGC 420


11395R-3.IR_full       421 AGCCATGAGGAGCTACCCACCTACCCTCGAGGATTGGAACCCCAGCAGCCGGGTGGTGAT 480
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11395R-3.in silico     421 AGCCATGAGGAGCTACCCACCTACCCTCGAGGATTGGAACCCCAGCAGCCGGGTGGTGAT 480


11395R-3.IR_full       481 CCAAATACCCTACAGCCTCG 500
                           ||||||||||||||||||||
11395R-3.in silico     481 CCAAATACCCTACAGCCTCG 500

</PRE>
 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  0  2  20  NM_137351.2  CG11395-RA (CG11395), mRNA 
0   0  3  5  2  NM_057539.3  CG9310-RA, transcript variant A (Hnf4), mRNA 
0   0  3  5  2  NM_164833.1  CG9310-RB, transcript variant B (Hnf4), mRNA 
0   0  3  5  2  NM_164834.1  CG9310-RC, transcript variant C (Hnf4), mRNA 
0   0  2  2  4  NM_132005.1  CG15780-RA (CG15780), mRNA 
0   0  1  3  4  NM_136685.2  CG18446-RA (CG18446), mRNA 
0   0  1  3  4  NM_138206.1  CG3371-RA (CG3371), mRNA 
0   0  1  3  2  NM_079512.2  CG2899-RA (ksr), mRNA 
0   0  0  6  6  NM_142367.1  CG5866-RA (CG5866), mRNA 
0   0  0  5  12  NM_168641.1  CG5942-RB, transcript variant B (brm), mRNA 
0   0  0  5  12  NM_080497.4  CG5942-RC, transcript variant C (brm), mRNA 
0   0  0  5  12  NM_080498.2  CG5942-RA, transcript variant A (brm), mRNA 
0   0  0  5  12  NM_168640.1  CG5942-RD, transcript variant D (brm), mRNA 
0   0  0  5  9  NM_164546.1  CG3851-RA (odd), mRNA 
0   0  0  4  9  NM_132525.1  CG15740-RA (CG15740), mRNA 
0   0  0  4  6  NM_165159.1  CG4952-RC, transcript variant C (dac), mRNA 
0   0  0  4  6  NM_165160.1  CG4952-RA, transcript variant A (dac), mRNA 
0   0  0  4  6  NM_001014486.1  CG4952-RG, transcript variant G (dac), mRNA 
0   0  0  4  6  NM_165162.1  CG4952-RB, transcript variant B (dac), mRNA 
0   0  0  4  6  NM_165161.1  CG4952-RD, transcript variant D (dac), mRNA 
0   0  0  4  6  NM_165163.1  CG4952-RE, transcript variant E (dac), mRNA 
0   0  0  4  6  NM_001014487.1  CG4952-RF, transcript variant F (dac), mRNA 
0   0  0  4  5  NM_137258.2  CG3687-RA (CG3687), mRNA 
0   0  0  4  4  NM_141688.1  CG8484-RA (topi), mRNA 
0   0  0  4  3  NM_170208.1  CG31103-RA (CG31103), mRNA 
0   0  0  4  2  NM_140165.1  CG14147-RA (CG14147), mRNA 
0   0  0  3  6  NM_132121.2  CG3135-RA (shf), mRNA 
0   0  0  3  6  NM_170179.1  CG31121-RA, transcript variant A (CG31121), mRNA 
0   0  0  3  6  NM_170180.1  CG31121-RB, transcript variant B (CG31121), mRNA 
0   0  0  3  6  NM_167121.1  CG9650-RC, transcript variant C (CG9650), mRNA 
 Pathways (updated: 2024/04/26)
 KEGG Pathway

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