|
Notice:
|
|
Suspension of shipments during Golden Week Holidays: From 29 April to 13 May, deadline 16 April.
|
|
| NIG-RNAi Strains Detail |
| Request : Click the "Order" button to request for this stock |
discarded
|
| Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
| Stock ID |
11335R-3 |
| Symbol |
lox |
Full Name |
lysyl oxidase-like |
| CG No |
CG11335 |
Old CG No |
CG11335 |
| Synonyms |
DmLOXL-1, Dmloxl-1, dmlox-1, CG11335, lox, Lox |
| Accession No (Link to NCBI) |
NM_079868.2 |
| Inserted Chr. |
lll |
| Insertional Mutation |
|
| Phenotype induced by Act5C-GAL4 at 28 degrees |
viable |
| Map Viewer |
|
Reference
[Please submit your publication]
|
Rice C, Macdonald SJ, Wang X, Ward RE.<br> The Broad Transcription Factor Links Hormonal Signaling, Gene Expression, and Cellular Morphogenesis Events During <i>Drosophila</i> Imaginal Disc Development.<br> Genetics (2020) 216(4) 1137-1152
[
PubMed ID = 33115752
]
[
RRC reference
]
Xu C, Franklin B, Tang HW, Regimbald-Dumas Y, Hu Y, Ramos J, Bosch JA, Villalta C, He X, Perrimon N.<br> An in vivo RNAi screen uncovers the role of AdoR signaling and adenosine deaminase in controlling intestinal stem cell activity.<br> Proc Natl Acad Sci U S A (2020) 117(1) 464-471
[
PubMed ID = 31852821
]
[
RRC reference
]
Tiwari P, Kumar A, Das RN, Malhotra V, VijayRaghavan K.<br> A Tendon Cell Specific RNAi Screen Reveals Novel Candidates Essential for Muscle Tendon Interaction.<br> PLoS One (2015) 10(10) e0140976
[
PubMed ID = 26488612
]
[
RRC reference
]
Kim SN, Jeibmann A, Halama K, Witte HT, Wälte M, Matzat T, Schillers H, Faber C, Senner V, Paulus W, Klämbt C.<br> ECM stiffness regulates glial migration in Drosophila and mammalian glioma models.<br> Development (2014) 141(16) 3233-42
[
PubMed ID = 25063458
]
[
RRC reference
]
|
| Comment |
|
| Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
| Primer Seq. 5' |
aaggcctacatggccggaccgGGCCAACCTCAACGTGCAGAA |
| Primer Seq. 3' |
aatctagaggtaccAAGCGTCGGCGGAAACACAGT |
| Predicted Fragment Size |
500 |
| IR fragment full Seq |
0001 GGCCAACCTC AACGTGCAGA ACAACTATAG AAACATGATG GTCCGACTGG CCACTAACAA
0061 GGCAGCGCTC GCCGGTATTC AAGTCCTCCG CGAGGGACGC GTGGAGGTGA GCTTTGACTT
0121 TGGCGCCTCA TGGGGTACGA TCTGCAGCAC TTCGTGGAGC ATGCGGGAGG CAAATGTGGT
0181 GTGCCGACAG CTAGGATTGG GCTACGCTTC CAAGGCAAGC CAGGGAACGG AGCACGGGGA
0241 TAGCCGGAAG TATCCCTGGG GCATGGTGGG CACTCTGTGC AGNGGGAACC GAGCGTCGCC
0301 TAGCCGACTG CATCCGGGAG TCCCACTACC CGAACCTCTG CAATTCCAGA AACCATAATG
0361 TCAGCATTGC GGCCTGTGTT AGCCATTCGG CTGACCTGGA GATCGGACTG GCTGGACATC
0421 GAGAGAACCG CCCGCCTGGA GGCCGTGCCC ATGTCGCGGC TCACATGCGC CATGGAAGAG
0481 CACTGTGTTT CCGCCGACGC TT |
| in silico PCR Fragment |
0001 GGCCAACCTC AACGTGCAGA ACAACTATAG AAACATGATG GTCCGACTGG CCACTAACAA
0061 GGCAGCGCTC GCCGGTATTC AAGTCCTCCG CGAGGGACGC GTGGAGGTGA GCTTTGACTT
0121 TGGCGCCTCA TGGGGTACGA TCTGCAGCAC TTCGTGGAGC ATGCGGGAGG CAAATGTGGT
0181 GTGCCGACAG CTAGGATTGG GCTACGCTTC CAAGGCAAGC CAGGGAACGG AGCACGGGGA
0241 TAGCCGGAAG TATCCCTGGG GCATGGTGGG CACTCTGTGC AG-GGGAACC GAGCGTCGCC
0301 TAGCCGACTG CATCCGGGAG TCCCACTACC CGAACCTCTG CAATGCCAGA AACCATAATG
0361 TCAGCATTGC GGCCTGTGTT AGCCATTCGG CTGACCTGGA GATCGGACTG G-TGGACATC
0421 GAGAGAACCG CCCGCCTGGA GGCCGTGCCC ATGTCGCGGC TCACATGCGC CATGGAAGAG
0481 CACTGTGTTT CCGCCGACGC TT |
| Assemble Data |
<PRE>
11335R-3.IR_full 1 GGCCAACCTCAACGTGCAGAACAACTATAGAAACATGATGGTCCGACTGGCCACTAACAA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11335R-3.in silico 1 GGCCAACCTCAACGTGCAGAACAACTATAGAAACATGATGGTCCGACTGGCCACTAACAA 60
11335R-3.IR_full 61 GGCAGCGCTCGCCGGTATTCAAGTCCTCCGCGAGGGACGCGTGGAGGTGAGCTTTGACTT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11335R-3.in silico 61 GGCAGCGCTCGCCGGTATTCAAGTCCTCCGCGAGGGACGCGTGGAGGTGAGCTTTGACTT 120
11335R-3.IR_full 121 TGGCGCCTCATGGGGTACGATCTGCAGCACTTCGTGGAGCATGCGGGAGGCAAATGTGGT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11335R-3.in silico 121 TGGCGCCTCATGGGGTACGATCTGCAGCACTTCGTGGAGCATGCGGGAGGCAAATGTGGT 180
11335R-3.IR_full 181 GTGCCGACAGCTAGGATTGGGCTACGCTTCCAAGGCAAGCCAGGGAACGGAGCACGGGGA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11335R-3.in silico 181 GTGCCGACAGCTAGGATTGGGCTACGCTTCCAAGGCAAGCCAGGGAACGGAGCACGGGGA 240
11335R-3.IR_full 241 TAGCCGGAAGTATCCCTGGGGCATGGTGGGCACTCTGTGCAG<span class="snp"><tt>N</tt></span>GGGAACCGAGCGTCGCC 300
||||||||||||||||||||||||||||||||||||||||||<span class="snp"><tt> </tt></span>|||||||||||||||||
11335R-3.in silico 241 TAGCCGGAAGTATCCCTGGGGCATGGTGGGCACTCTGTGCAG<span class="snp"><tt>-</tt></span>GGGAACCGAGCGTCGCC 300
11335R-3.IR_full 301 TAGCCGACTGCATCCGGGAGTCCCACTACCCGAACCTCTGCAAT<span class="snp"><tt>T</tt></span>CCAGAAACCATAATG 360
||||||||||||||||||||||||||||||||||||||||||||<span class="snp"><tt> </tt></span>|||||||||||||||
11335R-3.in silico 301 TAGCCGACTGCATCCGGGAGTCCCACTACCCGAACCTCTGCAAT<span class="snp"><tt>G</tt></span>CCAGAAACCATAATG 360
11335R-3.IR_full 361 TCAGCATTGCGGCCTGTGTTAGCCATTCGGCTGACCTGGAGATCGGACTGG<span class="snp"><tt>C</tt></span>TGGACATC 420
|||||||||||||||||||||||||||||||||||||||||||||||||||<span class="snp"><tt> </tt></span>||||||||
11335R-3.in silico 361 TCAGCATTGCGGCCTGTGTTAGCCATTCGGCTGACCTGGAGATCGGACTGG<span class="snp"><tt>-</tt></span>TGGACATC 420
11335R-3.IR_full 421 GAGAGAACCGCCCGCCTGGAGGCCGTGCCCATGTCGCGGCTCACATGCGCCATGGAAGAG 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11335R-3.in silico 421 GAGAGAACCGCCCGCCTGGAGGCCGTGCCCATGTCGCGGCTCACATGCGCCATGGAAGAG 480
11335R-3.IR_full 481 CACTGTGTTTCCGCCGACGCTT 502
||||||||||||||||||||||
11335R-3.in silico 481 CACTGTGTTTCCGCCGACGCTT 502
</PRE>
|
| Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
|
| cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
| 100 |
482 |
0 |
0 |
0 |
NM_079868.2 |
CG11335-RA (lox), mRNA |
| 0 |
0 |
4 |
2 |
8 |
NM_138031.1 |
CG3173-RA (CG3173), mRNA |
| 0 |
0 |
3 |
4 |
2 |
NM_136888.2 |
CG12367-RA (CG12367), mRNA |
| 0 |
0 |
2 |
14 |
24 |
NM_079082.3 |
CG4402-RA (lox2), mRNA |
| 0 |
0 |
2 |
3 |
5 |
NM_137163.3 |
CG10255-RA (Lap1), mRNA |
| 0 |
0 |
2 |
2 |
4 |
NM_142837.2 |
CG17141-RA (CG17141), mRNA |
| 0 |
0 |
1 |
4 |
3 |
NM_153772.1 |
CG13867-RA (MED8), mRNA |
| 0 |
0 |
1 |
3 |
3 |
NM_170348.1 |
CG31055-RB, transcript variant B (CG31055), mRNA |
| 0 |
0 |
1 |
3 |
3 |
NM_170347.1 |
CG31055-RC, transcript variant C (CG31055), mRNA |
| 0 |
0 |
1 |
3 |
3 |
NM_170346.1 |
CG31055-RA, transcript variant A (CG31055), mRNA |
| 0 |
0 |
1 |
3 |
2 |
NM_167706.1 |
CG1702-RA (CG1702), mRNA |
| 0 |
0 |
1 |
2 |
4 |
NM_169569.1 |
CG31533-RA (CG31533), mRNA |
| 0 |
0 |
1 |
2 |
3 |
NM_169309.3 |
CG8478-RA, transcript variant A (CG8478), mRNA |
| 0 |
0 |
1 |
2 |
3 |
NM_141684.3 |
CG8478-RB, transcript variant B (CG8478), mRNA |
| 0 |
0 |
1 |
2 |
3 |
NM_079063.2 |
CG10794-RA (DptB), mRNA |
| 0 |
0 |
1 |
2 |
2 |
NM_143717.1 |
CG10840-RB (eIF5B), mRNA |
| 0 |
0 |
1 |
2 |
2 |
NM_057716.3 |
CG8705-RA, transcript variant A (pnut), mRNA |
| 0 |
0 |
1 |
2 |
2 |
NM_165597.1 |
CG8705-RB, transcript variant B (pnut), mRNA |
| 0 |
0 |
0 |
6 |
2 |
NM_139540.1 |
CG14960-RA (CG14960), mRNA |
| 0 |
0 |
0 |
5 |
7 |
NM_078509.2 |
CG3929-RA (dx), mRNA |
| 0 |
0 |
0 |
5 |
5 |
NM_167401.1 |
CG1517-RB, transcript variant B (na), mRNA |
| 0 |
0 |
0 |
5 |
5 |
NM_167402.1 |
CG1517-RC, transcript variant C (na), mRNA |
| 0 |
0 |
0 |
5 |
5 |
NM_057992.2 |
CG5562-RA (gbb), mRNA |
| 0 |
0 |
0 |
5 |
3 |
NM_165227.1 |
CG7100-RD, transcript variant D (CadN), mRNA |
| 0 |
0 |
0 |
5 |
3 |
NM_165228.1 |
CG7100-RC, transcript variant C (CadN), mRNA |
| 0 |
0 |
0 |
5 |
3 |
NM_165229.1 |
CG7100-RA, transcript variant A (CadN), mRNA |
| 0 |
0 |
0 |
5 |
3 |
NM_165230.1 |
CG7100-RG, transcript variant G (CadN), mRNA |
| 0 |
0 |
0 |
5 |
3 |
NM_165231.1 |
CG7100-RE, transcript variant E (CadN), mRNA |
| 0 |
0 |
0 |
5 |
3 |
NM_001032108.1 |
CG7100-RJ, transcript variant J (CadN), mRNA |
| 0 |
0 |
0 |
5 |
3 |
NM_001032109.1 |
CG7100-RI, transcript variant I (CadN), mRNA |
|
|
Pathways (updated: 2024/04/26)
|
| KEGG Pathway |
|
|
|
