|
Notice:
|
|
Suspension of shipments during Golden Week Holidays: From 29 April to 13 May, deadline 16 April.
|
|
| NIG-RNAi Strains Detail |
| Request : Click the "Order" button to request for this stock |
|
| Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
| Stock ID |
11201R-3 |
| Symbol |
CG11201 |
Full Name |
CG11201 |
| CG No |
CG11201 |
Old CG No |
CG11201 |
| Synonyms |
CG11201 |
| Accession No (Link to NCBI) |
NM_135224.1 |
| Inserted Chr. |
X |
| Insertional Mutation |
|
| Phenotype induced by Act5C-GAL4 at 28 degrees |
viable |
| Map Viewer |
|
Reference
[Please submit your publication]
|
Tiwari P, Kumar A, Das RN, Malhotra V, VijayRaghavan K.<br> A Tendon Cell Specific RNAi Screen Reveals Novel Candidates Essential for Muscle Tendon Interaction.<br> PLoS One (2015) 10(10) e0140976
[
PubMed ID = 26488612
]
[
RRC reference
]
Umemori M, Habara O, Iwata T, Maeda K, Nishinoue K, Okabe A, Takemura M, Takahashi K, Saigo K, Ueda R, Adachi-Yamada T.<br> RNAi-mediated knockdown showing impaired cell survival in Drosophila wing imaginal disc.<br> Gene Regul Syst Bio (2009) 3 11-20
[
PubMed ID = 19838331
]
[
RRC reference
]
|
| Comment |
|
| Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
| Primer Seq. 5' |
aaggcctacatggccggaccgTTCACCGGAAATCGAAACCGC |
| Primer Seq. 3' |
aatctagaggtaccTCGGACATGCTCTGCAGCTTG |
| Predicted Fragment Size |
500 |
| IR fragment full Seq |
0001 NTCACCGGAA ATCGAAACCG CTACTACAAC CCCGTCTCAA AGATCCAGTC GCTCATTCAC
0061 AACCTGGNAC GCGGAGCTGG TGCAGCTGTG CAAGCAGTGC TCCGTGCAGA AGCCGCTGAC
0121 TAGCCTCAAT AACAGCACCA GCCTTGGCAG CCACTTCTCG AATTTCGGAG CGCTTGGTGG
0181 TGGCAGTGGG TCCAAAACCA TGGGCGGCAN GCNAGCAGCA TGGGTAGCAA CAACTTCTCT
0241 CCCGACAGCA TTGGCAATCT TTTGGCCCGT GTCCGTGCAT CAACTCCGTT GCCCAGGACC
0301 GTGACCAGCT CGCCCACGGC GCCGGAAGCA CAAAAGCGTC AGATGCGCAA TGTCTACCGC
0361 ACCCGTGTGA TCGATGCGTA CCGTAATCGG CGGATCTTCA CCGTATACGG CAACTACCAC
0421 ACGGTTAGAC GGGCTCTAAT GCGAAGGGGC TGGCTGGAGA AANCTGCCGG CCTCGCGGCA
0481 TGCCAAGCTG CAGAGCATGT CCGA |
| in silico PCR Fragment |
0001 TTCACCGGAA ATCGAAACCG CTACTACAAC CCCGTCTCAA AGATCCAGTC GCTCATTCAC
0061 AACCTGG-AC GCGGAGCTGG TGCAGCTGTG CAAGCAGTGC TCCGTGCAGA AGCCGCTGAC
0121 TAGCCTCAAT AACAGCACCA GCCTTGGCAG CCACTTCTCG AATTTCGGAG CGCTTGGTGG
0181 TGGCAGTGGG TCCAAAACCA TGGGCGGCA- GC-AGCAGCA TGGGTAGCAA CAACTTCTCT
0241 CCCGACAGCA TTGGCAATCT TTTGGCCCGT GTCCGTGCAT CAACTCCGTT GCCCAGGACC
0301 GTGACCAGCT CGCCCACGGC GCCGGAAGCA CAAAAGCGTC AGATGCGCAA TGTCTACCGC
0361 ACCCGTGTGA TCGATGCGTA CCGTAATCGG CGGATCTTCA CCGTATACGG CAACTACCAC
0421 ACGGTTAGAC GGGCTCTAAT GCGAAGGGGC TGGCTGGAGA AA-CTGCCGG CCTCGCGGCA
0481 TGCCAAGCTG CAGAGCATGT CCGA |
| Assemble Data |
<PRE>
11201R-3.IR_full 1 TCACCGGAAATCGAAACCGCTACTACAACCCCGTCTCAAAGATCCAGTCGCTCATTCAC 59
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11201R-3.in silico 1 TCACCGGAAATCGAAACCGCTACTACAACCCCGTCTCAAAGATCCAGTCGCTCATTCAC 59
11201R-3.IR_full 61 AACCTGG<span class="snp"><tt>N</tt></span>ACGCGGAGCTGGTGCAGCTGTGCAAGCAGTGCTCCGTGCAGAAGCCGCTGAC 119
|||||||<span class="snp"><tt> </tt></span>||||||||||||||||||||||||||||||||||||||||||||||||||||
11201R-3.in silico 61 AACCTGG<span class="snp"><tt>-</tt></span>ACGCGGAGCTGGTGCAGCTGTGCAAGCAGTGCTCCGTGCAGAAGCCGCTGAC 119
11201R-3.IR_full 121 TAGCCTCAATAACAGCACCAGCCTTGGCAGCCACTTCTCGAATTTCGGAGCGCTTGGTGG 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11201R-3.in silico 121 TAGCCTCAATAACAGCACCAGCCTTGGCAGCCACTTCTCGAATTTCGGAGCGCTTGGTGG 179
11201R-3.IR_full 181 TGGCAGTGGGTCCAAAACCATGGGCGGCA<span class="snp"><tt>N</tt></span>GC<span class="snp"><tt>N</tt></span>AGCAGCATGGGTAGCAACAACTTCTCT 239
|||||||||||||||||||||||||||||<span class="snp"><tt> </tt></span>||<span class="snp"><tt> </tt></span>|||||||||||||||||||||||||||
11201R-3.in silico 181 TGGCAGTGGGTCCAAAACCATGGGCGGCA<span class="snp"><tt>-</tt></span>GC<span class="snp"><tt>-</tt></span>AGCAGCATGGGTAGCAACAACTTCTCT 239
11201R-3.IR_full 241 CCCGACAGCATTGGCAATCTTTTGGCCCGTGTCCGTGCATCAACTCCGTTGCCCAGGACC 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11201R-3.in silico 241 CCCGACAGCATTGGCAATCTTTTGGCCCGTGTCCGTGCATCAACTCCGTTGCCCAGGACC 299
11201R-3.IR_full 301 GTGACCAGCTCGCCCACGGCGCCGGAAGCACAAAAGCGTCAGATGCGCAATGTCTACCGC 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11201R-3.in silico 301 GTGACCAGCTCGCCCACGGCGCCGGAAGCACAAAAGCGTCAGATGCGCAATGTCTACCGC 359
11201R-3.IR_full 361 ACCCGTGTGATCGATGCGTACCGTAATCGGCGGATCTTCACCGTATACGGCAACTACCAC 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11201R-3.in silico 361 ACCCGTGTGATCGATGCGTACCGTAATCGGCGGATCTTCACCGTATACGGCAACTACCAC 419
11201R-3.IR_full 421 ACGGTTAGACGGGCTCTAATGCGAAGGGGCTGGCTGGAGAAA<span class="snp"><tt>N</tt></span>CTGCCGGCCTCGCGGCA 479
||||||||||||||||||||||||||||||||||||||||||<span class="snp"><tt> </tt></span>|||||||||||||||||
11201R-3.in silico 421 ACGGTTAGACGGGCTCTAATGCGAAGGGGCTGGCTGGAGAAA<span class="snp"><tt>-</tt></span>CTGCCGGCCTCGCGGCA 479
11201R-3.IR_full 481 TGCCAAGCTGCAGAGCATGTCCGA 503
||||||||||||||||||||||||
11201R-3.in silico 481 TGCCAAGCTGCAGAGCATGTCCGA 503
</PRE>
|
| Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
|
| cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
| 100 |
482 |
0 |
0 |
0 |
NM_135224.1 |
CG11201-RA (CG11201), mRNA |
| 0 |
0 |
4 |
5 |
8 |
NM_176386.1 |
CG11489-RC, transcript variant C (CG11489), mRNA |
| 0 |
0 |
4 |
4 |
4 |
NM_166663.1 |
CG13569-RB, transcript variant B (CG13569), mRNA |
| 0 |
0 |
4 |
4 |
4 |
NM_138044.2 |
CG13569-RA, transcript variant A (CG13569), mRNA |
| 0 |
0 |
4 |
4 |
4 |
NM_141130.3 |
CG11489-RB, transcript variant B (CG11489), mRNA |
| 0 |
0 |
4 |
3 |
2 |
NM_165069.1 |
CG8954-RB, transcript variant B (Smg5), mRNA |
| 0 |
0 |
4 |
3 |
2 |
NM_135841.4 |
CG8954-RA, transcript variant A (Smg5), mRNA |
| 0 |
0 |
4 |
2 |
17 |
NM_080364.3 |
CG5461-RA, transcript variant A (bun), mRNA |
| 0 |
0 |
4 |
2 |
17 |
NM_001042894.1 |
CG5461-RF, transcript variant F (bun), mRNA |
| 0 |
0 |
4 |
2 |
9 |
NM_165012.1 |
CG5461-RB, transcript variant B (bun), mRNA |
| 0 |
0 |
4 |
2 |
9 |
NM_165013.2 |
CG5461-RC, transcript variant C (bun), mRNA |
| 0 |
0 |
4 |
2 |
9 |
NM_001042892.1 |
CG5461-RD, transcript variant D (bun), mRNA |
| 0 |
0 |
4 |
2 |
9 |
NM_001042893.1 |
CG5461-RE, transcript variant E (bun), mRNA |
| 0 |
0 |
3 |
3 |
5 |
NM_141323.1 |
CG2097-RA (CG2097), mRNA |
| 0 |
0 |
3 |
2 |
7 |
NM_140829.2 |
CG6812-RA (CG6812), mRNA |
| 0 |
0 |
3 |
2 |
6 |
NM_167200.1 |
CG1343-RB, transcript variant B (Sp1), mRNA |
| 0 |
0 |
3 |
2 |
6 |
NM_132351.1 |
CG1343-RA, transcript variant A (Sp1), mRNA |
| 0 |
0 |
2 |
4 |
8 |
NM_166876.1 |
CG14622-RB, transcript variant B (DAAM), mRNA |
| 0 |
0 |
2 |
4 |
8 |
NM_166875.1 |
CG14622-RC, transcript variant C (DAAM), mRNA |
| 0 |
0 |
2 |
4 |
8 |
NM_130544.3 |
CG14622-RA, transcript variant A (DAAM), mRNA |
| 0 |
0 |
2 |
3 |
9 |
NM_001043216.1 |
CG34113-RO, transcript variant O (CG34113), mRNA |
| 0 |
0 |
2 |
3 |
5 |
NM_001043217.1 |
CG34113-RP, transcript variant P (CG34113), mRNA |
| 0 |
0 |
2 |
3 |
2 |
NM_144182.1 |
CG14162-RA (dpr6), mRNA |
| 0 |
0 |
2 |
2 |
6 |
NM_166022.1 |
CG30481-RA, transcript variant A (mRpL53), mRNA |
| 0 |
0 |
2 |
2 |
6 |
NM_001032246.1 |
CG33155-RD, transcript variant D (CG33155), mRNA |
| 0 |
0 |
2 |
2 |
6 |
NM_001032248.1 |
CG33155-RA, transcript variant A (CG33155), mRNA |
| 0 |
0 |
2 |
2 |
6 |
NM_001032247.1 |
CG33155-RC, transcript variant C (CG33155), mRNA |
| 0 |
0 |
2 |
2 |
5 |
NM_137255.2 |
CG15706-RA (CG15706), mRNA |
| 0 |
0 |
1 |
6 |
7 |
NM_137195.2 |
CG8180-RA (CG8180), mRNA |
| 0 |
0 |
1 |
5 |
11 |
NM_139967.1 |
CG7037-RB, transcript variant B (Cbl), mRNA |
|
| Wing Disc |
GFP
 |
Puc
 |
Caspase
 |
DAPI
 |
Merge
 |
Figure
 |
JNK signal
| N |
 |
| +- |
|
| DB |
 |
| + |
|
| DC |
 |
| ++ |
|
| DM |
 |
| + |
|
| VM |
 |
| + |
|
| VB |
 |
| + |
|
|
Caspase-3 signal
| N |
|
| + |
|
| DB |
|
| ++ |
|
| DC |
|
| ++ |
|
| DM |
|
| ++ |
|
| VM |
|
| + |
|
| VB |
|
| + |
|
|
| Dcompartment |
|
Penetrance |
| + |
|
|
|
|
|
Pathways (updated: 2024/04/26)
|
| KEGG Pathway |
|
|
|
