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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 10745R-2 
 Symbol stv  Full Name starvin 
 CG No CG32130  Old CG No CG10745 
 Synonyms CG32130, GH04349, l(3)00543, CG14108, CG10745, stv, lethal (3) 00543, starvin 
 Accession No (Link to NCBI) NM_168551.1 
 Inserted Chr. lll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees lethal 
 Map Viewer
 Reference
[Please submit your publication] 		 
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5' 
aaggcctacatggccggaccgAAAGCGCCTTTGCGATGCTGC 
 Primer Seq. 3' 
aatctagaggtaccATGCCTGTGCCTGAGCTTGGG 
 Predicted Fragment Size 
500 
 IR fragment full Seq 
0001 AAAGCGCCTT TGCGATGCTG CCATCCAGAC GGAGGATCCT GCCGGTCGCT CGGAGGTTGA 
0061 TTGTGCCCCG CCGACTAACT TGAACCAGCA CGGACTGCGA AACACTGTCG ACATGGGCGT 
0121 GAAGAGTGTC GCCGAGCAGG ATCAGGGACT GCGATCCCAC TCCGCCCCTC CGCCAGAGCA 
0181 GCAGCAGCAG AATCTGCAGT ATCACCAGCA GCAGCAACAG CATCAGCAAC CGGGAGTACA 
0241 TAGCCAACCG TTTGGCACCC AGACAAGTCC GCCCGTTCAG GGTCAGCAGT TCAAGACCTA 
0301 CTATGCGCCG CACCAGCAGA CGCATCCCCA GCAAAAGCAG CAGACCCCGC CGCCAGCTCC 
0361 ACAGACCCCG GGTGGCACCT ATGTGCGCAC CATTCCCATC TTTGTTGAGG GTCGCTCCGA 
0421 GCCCATCATC AATGCCCACA AGGAGATACC GAACCAGAAC GCTCCGGCCC AGTGCTCAGG 
0481 CCCAAGCTCA GGCACAGGCA T 
 in silico PCR Fragment 
0001 AAAGCGCCTT TGCGATGCTG CCATCCAGAC GGAGGATCCT GCCGGTCGCT CGGAGGTTGA 
0061 TTGTGCCCCG CCGACTAACT TGAACCAGCA CGGACTGCGA AACACTGTCG ACATGGGCGT 
0121 GAAGAGTGTC GCCGAGCAGG ATCAGGGACT GCGATCCCAC TCCGCCCCTC CGCCAGAGCA 
0181 GCAGCAGCAG AATCTGCAGT ATCACCAGCA GCAGCAACAG CATCAGCAAC CGGGAGTACA 
0241 TAGCCAACCG TTTGGCACCC AGACAAGTCC GCCCGTTCAG GGTCAGCAGT TCAAGACCTA 
0301 CTATGCGCCG CACCAGCAGA CGCATCCCCA GCAAAAGCAG CAGACCCCGC CGCCAGCTCC 
0361 ACAGACCCCG GGTGGCACCT ATGTGCGCAC CATTCCCATC TTTGTTGAGG GTCGCTCCGA 
0421 GCCCATCATC AATGCCCACA AGGAGATACC GAACCAGAAC GCTCC-GCCC AGTGCTCAGG 
0481 CCCAAGCTCA GGCACAGGCA T 
 Assemble Data 
<PRE>

10745R-2.IR_full       1   AAAGCGCCTTTGCGATGCTGCCATCCAGACGGAGGATCCTGCCGGTCGCTCGGAGGTTGA 60
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10745R-2.in silico     1   AAAGCGCCTTTGCGATGCTGCCATCCAGACGGAGGATCCTGCCGGTCGCTCGGAGGTTGA 60


10745R-2.IR_full       61  TTGTGCCCCGCCGACTAACTTGAACCAGCACGGACTGCGAAACACTGTCGACATGGGCGT 120
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10745R-2.in silico     61  TTGTGCCCCGCCGACTAACTTGAACCAGCACGGACTGCGAAACACTGTCGACATGGGCGT 120


10745R-2.IR_full       121 GAAGAGTGTCGCCGAGCAGGATCAGGGACTGCGATCCCACTCCGCCCCTCCGCCAGAGCA 180
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10745R-2.in silico     121 GAAGAGTGTCGCCGAGCAGGATCAGGGACTGCGATCCCACTCCGCCCCTCCGCCAGAGCA 180


10745R-2.IR_full       181 GCAGCAGCAGAATCTGCAGTATCACCAGCAGCAGCAACAGCATCAGCAACCGGGAGTACA 240
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10745R-2.in silico     181 GCAGCAGCAGAATCTGCAGTATCACCAGCAGCAGCAACAGCATCAGCAACCGGGAGTACA 240


10745R-2.IR_full       241 TAGCCAACCGTTTGGCACCCAGACAAGTCCGCCCGTTCAGGGTCAGCAGTTCAAGACCTA 300
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10745R-2.in silico     241 TAGCCAACCGTTTGGCACCCAGACAAGTCCGCCCGTTCAGGGTCAGCAGTTCAAGACCTA 300


10745R-2.IR_full       301 CTATGCGCCGCACCAGCAGACGCATCCCCAGCAAAAGCAGCAGACCCCGCCGCCAGCTCC 360
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10745R-2.in silico     301 CTATGCGCCGCACCAGCAGACGCATCCCCAGCAAAAGCAGCAGACCCCGCCGCCAGCTCC 360


10745R-2.IR_full       361 ACAGACCCCGGGTGGCACCTATGTGCGCACCATTCCCATCTTTGTTGAGGGTCGCTCCGA 420
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10745R-2.in silico     361 ACAGACCCCGGGTGGCACCTATGTGCGCACCATTCCCATCTTTGTTGAGGGTCGCTCCGA 420


10745R-2.IR_full       421 GCCCATCATCAATGCCCACAAGGAGATACCGAACCAGAACGCTCC<span class="snp"><tt>G</tt></span>GCCCAGTGCTCAGG 480
                           |||||||||||||||||||||||||||||||||||||||||||||<span class="snp"><tt>&nbsp;</tt></span>||||||||||||||
10745R-2.in silico     421 GCCCATCATCAATGCCCACAAGGAGATACCGAACCAGAACGCTCC<span class="snp"><tt>-</tt></span>GCCCAGTGCTCAGG 480


10745R-2.IR_full       481 CCCAAGCTCAGGCACAGGCAT 501
                           |||||||||||||||||||||
10745R-2.in silico     481 CCCAAGCTCAGGCACAGGCAT 501

</PRE>
 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  4  17  114  NM_168551.1  CG32130-RA, transcript variant A (stv), mRNA 
100   482  0  1  24  NM_168553.1  CG32130-RB, transcript variant B (stv), mRNA 
100   482  0  1  24  NM_168552.1  CG32130-RC, transcript variant C (stv), mRNA 
100   482  0  1  24  NM_168554.1  CG32130-RD, transcript variant D (stv), mRNA 
1.03   5  7  46  141  NM_057502.2  CG1322-RB, transcript variant B (zfh1), mRNA 
1.03   5  7  45  131  NM_170522.2  CG1322-RC, transcript variant C (zfh1), mRNA 
1.03   5  5  24  68  NM_170523.2  CG1322-RA, transcript variant A (zfh1), mRNA 
1.03   5  5  6  39  NM_143104.1  CG11856-RA (Nup358), mRNA 
1.03   5  3  15  89  NM_057265.3  CG1264-RA (lab), mRNA 
0.82   4  31  74  263  NM_134552.3  CG1412-RA (RhoGAP19D), mRNA 
0.82   4  7  44  177  NM_001032408.1  CG33956-RD, transcript variant D (kay), mRNA 
0.82   4  7  8  57  NM_079838.2  CG5099-RA, transcript variant A (msi), mRNA 
0.82   4  7  8  56  NM_170229.2  CG5099-RB, transcript variant B (msi), mRNA 
0.82   4  3  3  20  NM_140314.2  CG10698-RA (GRHRII), mRNA 
0.62   3  24  134  419  NM_169696.1  CG3992-RA, transcript variant A (srp), mRNA 
0.62   3  24  134  419  NM_169694.1  CG3992-RB, transcript variant B (srp), mRNA 
0.62   3  17  88  293  NM_079240.2  CG7391-RA, transcript variant A (Clk), mRNA 
0.62   3  17  88  293  NM_001014574.1  CG7391-RF, transcript variant F (Clk), mRNA 
0.62   3  17  88  293  NM_001014575.1  CG7391-RE, transcript variant E (Clk), mRNA 
0.62   3  17  88  293  NM_001014576.1  CG7391-RD, transcript variant D (Clk), mRNA 
0.62   3  17  88  293  NM_206299.1  CG7391-RC, transcript variant C (Clk), mRNA 
0.62   3  17  88  293  NM_170628.1  CG7391-RB, transcript variant B (Clk), mRNA 
0.62   3  13  38  110  NM_169874.1  CG4608-RA (bnl), mRNA 
0.62   3  12  54  244  NM_001014681.1  CG33553-RD, transcript variant D (Doa), mRNA 
0.62   3  12  54  244  NM_001043298.1  CG33553-RH, transcript variant H (Doa), mRNA 
0.62   3  12  53  235  NM_001014679.1  CG33553-RC, transcript variant C (Doa), mRNA 
0.62   3  3  9  25  NM_136637.1  CG13954-RA (CG13954), mRNA 
0.62   3  3  4  15  NM_164637.1  CG14025-RB, transcript variant B (Bsg25D), mRNA 
0.62   3  3  4  15  NM_057568.4  CG14025-RA, transcript variant A (Bsg25D), mRNA 
0.62   3  3  4  15  NM_164638.1  CG14025-RC, transcript variant C (Bsg25D), mRNA 
 Pathways (updated: 2024/04/26)
 KEGG Pathway

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