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Notice:
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Suspension of shipments during Golden Week Holidays: From 29 April to 13 May, deadline 16 April.
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| NIG-RNAi Strains Detail |
| Request : Click the "Order" button to request for this stock |
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| Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
| Stock ID |
10712R-2 |
| Symbol |
Chro |
Full Name |
Chromator |
| CG No |
CG10712 |
Old CG No |
CG10712 |
| Synonyms |
Chriz, CG10712, unnamed, anon-EST:fe2E3, Chro |
| Accession No (Link to NCBI) |
NM_141169.2 |
| Inserted Chr. |
ll |
| Insertional Mutation |
|
| Phenotype induced by Act5C-GAL4 at 28 degrees |
lethal |
| Map Viewer |
|
Reference
[Please submit your publication]
|
Ohhara Y, Nakamura A, Kato Y, Yamakawa-Kobayashi K.<br> Chaperonin TRiC/CCT supports mitotic exit and entry into endocycle in Drosophila.<br> PLoS Genet (2019) 15(4) e1008121
[
PubMed ID = 31034473
]
[
RRC reference
]
Saj A, Arziman Z, Stempfle D, van Belle W, Sauder U, Horn T, Dürrenberger M, Paro R, Boutros M, Merdes G.<br> A combined ex vivo and in vivo RNAi screen for notch regulators in Drosophila reveals an extensive notch interaction network.<br> Dev Cell (2010) 18(5) 862-76
[
PubMed ID = 20493818
]
[
RRC reference
]
|
| Comment |
|
| Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
| Primer Seq. 5' |
aaggcctacatggccggaccgTGGACGTTCTTGTATGTGGAC |
| Primer Seq. 3' |
aatctagaggtaccTGAGGAAGGCGTTGGTGTACT |
| Predicted Fragment Size |
500 |
| IR fragment full Seq |
0001 TGGACGTTCT TGTATGTGGA CGATGTCTCC GGGCCTACAA CTTCGTGGAA GAGTTTCAGG
0061 CCCACAAAGA GGACGCCTGC GAAAGGGAAC AATGCAAATT TGAAGGAATC GCTCGATCCC
0121 AAGCCCACCA TCTGGGCTTT TACGCTATGG AAAGCTACTC AGCTGCACTC GCGCAAGGAC
0181 GCGTCCGGCA ACTCGTGGGC CTTGTACCAG CATTGGGTAA AACTAGACGA TAGCGTCCGC
0241 GAGCCGTGGT ATTGTGGCTG GGAAGACCAT ACAGTCATTC GGCAAAATTG CACACGGACA
0301 ACTCCAAGGA CATGCCTGTG CGAATAACAA AGGACTGTGG TCAATCCAAA CAATAACAAC
0361 ACATCAAATA GCAACAAACA ACAACACGAG CGTCTCCCCT ACCAGAAAAT CACCAACCGG
0421 TAAGCTGCCT ACCGTTAGCC AATCAACTAA AGGATACAGA AAACGAAAGA CCCAAGTCCA
0481 AGCCGAGTAC ACCAACGCCT TCCTCA |
| in silico PCR Fragment |
0001 TGGACGTTCT TGTATGTGGA CGATGTCTCC GGGCCTACAA CTTCGTGGAA GAGTTTCAGG
0061 CCCACAAAGA GGACGCCTGC GAAAAGGAA- AATGCAAATT TGAAGGAATC GCTCGATCCC
0121 AAGCCCACCA TCTGGGCTTT TACGCTATGG AAAGCTACTC AGCTGCACTC GCGCAAGGAC
0181 GCGTCCGGCA GCTCGTGGGC CTTGTACCAG CATTGGGTAA AACTAGACGA TAGCGTCCGC
0241 GAGCCGTGG- ATTGTGGCTG GGAAGACCAT ACAGTCATTC GGCAAAATTG CACACGGACA
0301 ACTCC-AGGA CATGCCTGTG CGAATAACAA A-GACTGTGG TCAATCCAAA CAATAACAAC
0361 ACATCAAATA GCAAC-AACA ACAACACGAG CGTCTCCCCT ACCAGAAAAT CACCAACCGG
0421 TAAGCTGCCT A-CGTTAGCC AATCAACTAA AGGATACAGA AAACGAAAGA CCCAAGTCCA
0481 AGCCGAGTAC ACCAACGCCT TCCTCA |
| Assemble Data |
<PRE>
10712R-2.IR_full 1 TGGACGTTCTTGTATGTGGACGATGTCTCCGGGCCTACAACTTCGTGGAAGAGTTTCAGG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10712R-2.in silico 1 TGGACGTTCTTGTATGTGGACGATGTCTCCGGGCCTACAACTTCGTGGAAGAGTTTCAGG 60
10712R-2.IR_full 61 CCCACAAAGAGGACGCCTGCGAAA<span class="snp"><tt>G</tt></span>GGAA<span class="snp"><tt>C</tt></span>AATGCAAATTTGAAGGAATCGCTCGATCCC 120
||||||||||||||||||||||||<span class="snp"><tt> </tt></span>||||<span class="snp"><tt> </tt></span>||||||||||||||||||||||||||||||
10712R-2.in silico 61 CCCACAAAGAGGACGCCTGCGAAA<span class="snp"><tt>A</tt></span>GGAA<span class="snp"><tt>-</tt></span>AATGCAAATTTGAAGGAATCGCTCGATCCC 120
10712R-2.IR_full 121 AAGCCCACCATCTGGGCTTTTACGCTATGGAAAGCTACTCAGCTGCACTCGCGCAAGGAC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10712R-2.in silico 121 AAGCCCACCATCTGGGCTTTTACGCTATGGAAAGCTACTCAGCTGCACTCGCGCAAGGAC 180
10712R-2.IR_full 181 GCGTCCGGCA<span class="snp"><tt>A</tt></span>CTCGTGGGCCTTGTACCAGCATTGGGTAAAACTAGACGATAGCGTCCGC 240
||||||||||<span class="snp"><tt> </tt></span>|||||||||||||||||||||||||||||||||||||||||||||||||
10712R-2.in silico 181 GCGTCCGGCA<span class="snp"><tt>G</tt></span>CTCGTGGGCCTTGTACCAGCATTGGGTAAAACTAGACGATAGCGTCCGC 240
10712R-2.IR_full 241 GAGCCGTGG<span class="snp"><tt>T</tt></span>ATTGTGGCTGGGAAGACCATACAGTCATTCGGCAAAATTGCACACGGACA 300
|||||||||<span class="snp"><tt> </tt></span>||||||||||||||||||||||||||||||||||||||||||||||||||
10712R-2.in silico 241 GAGCCGTGG<span class="snp"><tt>-</tt></span>ATTGTGGCTGGGAAGACCATACAGTCATTCGGCAAAATTGCACACGGACA 300
10712R-2.IR_full 301 ACTCC<span class="snp"><tt>A</tt></span>AGGACATGCCTGTGCGAATAACAAA<span class="snp"><tt>G</tt></span>GACTGTGGTCAATCCAAACAATAACAAC 360
|||||<span class="snp"><tt> </tt></span>|||||||||||||||||||||||||<span class="snp"><tt> </tt></span>||||||||||||||||||||||||||||
10712R-2.in silico 301 ACTCC<span class="snp"><tt>-</tt></span>AGGACATGCCTGTGCGAATAACAAA<span class="snp"><tt>-</tt></span>GACTGTGGTCAATCCAAACAATAACAAC 360
10712R-2.IR_full 361 ACATCAAATAGCAAC<span class="snp"><tt>A</tt></span>AACAACAACACGAGCGTCTCCCCTACCAGAAAATCACCAACCGG 420
|||||||||||||||<span class="snp"><tt> </tt></span>||||||||||||||||||||||||||||||||||||||||||||
10712R-2.in silico 361 ACATCAAATAGCAAC<span class="snp"><tt>-</tt></span>AACAACAACACGAGCGTCTCCCCTACCAGAAAATCACCAACCGG 420
10712R-2.IR_full 421 TAAGCTGCCTA<span class="snp"><tt>C</tt></span>CGTTAGCCAATCAACTAAAGGATACAGAAAACGAAAGACCCAAGTCCA 480
|||||||||||<span class="snp"><tt> </tt></span>||||||||||||||||||||||||||||||||||||||||||||||||
10712R-2.in silico 421 TAAGCTGCCTA<span class="snp"><tt>-</tt></span>CGTTAGCCAATCAACTAAAGGATACAGAAAACGAAAGACCCAAGTCCA 480
10712R-2.IR_full 481 AGCCGAGTACACCAACGCCTTCCTCA 506
||||||||||||||||||||||||||
10712R-2.in silico 481 AGCCGAGTACACCAACGCCTTCCTCA 506
</PRE>
|
| Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
|
| cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
| 100 |
482 |
0 |
0 |
2 |
NM_168975.1 |
CG10712-RB, transcript variant B (Chro), mRNA |
| 100 |
482 |
0 |
0 |
2 |
NM_168976.1 |
CG10712-RC, transcript variant C (Chro), mRNA |
| 100 |
482 |
0 |
0 |
1 |
NM_141169.2 |
CG10712-RA, transcript variant A (Chro), mRNA |
| 0.2 |
1 |
3 |
10 |
39 |
NM_136854.1 |
CG13194-RA (pyr), mRNA |
| 0.2 |
1 |
3 |
3 |
13 |
NM_143154.3 |
CG5053-RA (CG5053), mRNA |
| 0.2 |
1 |
3 |
3 |
2 |
NM_169294.1 |
CG9399-RB, transcript variant B (CG9399), mRNA |
| 0.2 |
1 |
3 |
3 |
2 |
NM_141656.1 |
CG9399-RA, transcript variant A (CG9399), mRNA |
| 0.2 |
1 |
2 |
4 |
7 |
NM_205989.2 |
CG4551-RB, transcript variant B (smi35A), mRNA |
| 0.2 |
1 |
2 |
4 |
7 |
NM_078840.4 |
CG4551-RA, transcript variant A (smi35A), mRNA |
| 0.2 |
1 |
2 |
4 |
7 |
NM_205988.2 |
CG4551-RC, transcript variant C (smi35A), mRNA |
| 0.2 |
1 |
2 |
4 |
7 |
NM_001038818.1 |
CG4551-RE, transcript variant E (smi35A), mRNA |
| 0.2 |
1 |
2 |
4 |
7 |
NM_001038817.1 |
CG4551-RD, transcript variant D (smi35A), mRNA |
| 0.2 |
1 |
2 |
3 |
7 |
NM_165017.1 |
CG12287-RB, transcript variant B (pdm2), mRNA |
| 0 |
0 |
6 |
23 |
90 |
NM_167335.1 |
CG4013-RC, transcript variant C (Smr), mRNA |
| 0 |
0 |
6 |
23 |
90 |
NM_167334.1 |
CG4013-RB, transcript variant B (Smr), mRNA |
| 0 |
0 |
6 |
23 |
90 |
NM_080536.2 |
CG4013-RA, transcript variant A (Smr), mRNA |
| 0 |
0 |
4 |
11 |
21 |
NM_132538.1 |
CG15737-RA (CG15737), mRNA |
| 0 |
0 |
3 |
15 |
35 |
NM_001042820.1 |
CG34145-RA (CG34145), mRNA |
| 0 |
0 |
3 |
7 |
16 |
NM_167685.1 |
CG12701-RB, transcript variant B (CG12701), mRNA |
| 0 |
0 |
3 |
7 |
16 |
NM_134512.4 |
CG12701-RA, transcript variant A (CG12701), mRNA |
| 0 |
0 |
3 |
7 |
9 |
NM_133043.2 |
CG5744-RB, transcript variant B (Frq1), mRNA |
| 0 |
0 |
3 |
7 |
9 |
NM_001038764.1 |
CG5744-RC, transcript variant C (Frq1), mRNA |
| 0 |
0 |
3 |
4 |
4 |
NM_079055.2 |
CG4943-RA (lack), mRNA |
| 0 |
0 |
3 |
3 |
19 |
NM_057539.3 |
CG9310-RA, transcript variant A (Hnf4), mRNA |
| 0 |
0 |
2 |
13 |
58 |
NM_132370.1 |
CG2989-RA (CG2989), mRNA |
| 0 |
0 |
2 |
7 |
19 |
NM_079445.2 |
CG8567-RA, transcript variant A (Deaf1), mRNA |
| 0 |
0 |
2 |
7 |
19 |
NM_001038944.1 |
CG8567-RB, transcript variant B (Deaf1), mRNA |
| 0 |
0 |
2 |
7 |
18 |
NM_169565.1 |
CG9924-RA, transcript variant A (CG9924), mRNA |
| 0 |
0 |
2 |
7 |
18 |
NM_001038965.1 |
CG9924-RE, transcript variant E (CG9924), mRNA |
| 0 |
0 |
2 |
7 |
18 |
NM_169564.1 |
CG9924-RD, transcript variant D (CG9924), mRNA |
|
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Pathways (updated: 2024/04/26)
|
| KEGG Pathway |
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