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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 10537R-2 
 Symbol Rdl  Full Name Resistant to dieldrin 
 CG No CG10537  Old CG No CG10537 
 Synonyms gaba, DmRdl, RDL, GABA[[A]] receptor, DmRDL, CG10537, GABA, LCCH1, unnamed, GABA[[A]], GABAr, Rdl 
 Accession No (Link to NCBI) NM_079267.2 
 Inserted Chr. X 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees viable 
 Map Viewer
 Reference
[Please submit your publication] 		 
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5' 
aaggcctacatggccggaccgATTTCCCCATGGATCGCCAGC 
 Primer Seq. 3' 
aatctagaggtaccTCGTTTTGCCATGTAGCCGAC 
 Predicted Fragment Size 
500 
 IR fragment full Seq 
0001 ATTTCCCCAT GGATCGCCAG CTGTGCCACA TTGAAATCGA AAGCTTCGGC TACACGATGC 
0061 GTGACATCCG CTATAAATGG AACGAAGGCC CCAACTCGGT CGGTGTCTCG AGTGAGGTTT 
0121 CGCTGCCCCA ATTTAAGGTC TTGGGTCATC GGCAAAGAGC TATGGAAATC AGTCTTACCA 
0181 CAGGCAACTA TTCGCGTTTA GCCTGCGAAA TTCAGTTCGT GCGTTCGATG GGCTACTACC 
0241 TTATACAAAT CTACATACCC TCTGGACTGA TCGTTATTAT ATCATGGGTA TCATTTTGGC 
0301 TCAATCGCAA TGCAACGCCG GCGCGTGTGG CGCTCGGTGT GACAACCGTG TTGACAATGA 
0361 CCACTTTGAT GTCGTCAACA AATGCAGCGC TGCCAAAGAT TTCGTACGTC AAATCGATTG 
0421 ACGTCTATCT GGGAACATGC TTCGTTATGG TCTTTGCCAG TCTACTGGAA TACGCCACGG 
0481 TCGGCTACAT GGCAAAACGA  
 in silico PCR Fragment 
0001 ATTTCCCCAT GGATCGCCAG CTGTGCCACA TTGAAATCGA AAGCTTCGGC TACACGATGC 
0061 GTGACATCCG CTATAAATGG AACGAAGGCC CCAACTCGGT CGGTGTCTCG AGTGAGGTTT 
0121 CGCTGCCCCA ATTTAAGGTC TTGGGTCATC GGCAAAGAGC TATGGAAATC AGTCTTACCA 
0181 CAGGCAACTA TTCGCGTTTA GCCTGCGAAA TTCAGTTCGT GCGTTCGATG GGCTACTACC 
0241 TTATACAAAT CTACATACCC TCTGGACTGA TCGTTATTAT ATCATGGGTA TCATTTTGGC 
0301 TCAATCGCAA TGCAACGCCG GCGCGTGTGG CGCTCGGTGT GACAACCGTG TTGACAATGA 
0361 CCACTTTGAT GTCGTCAACA AATGCAGCGC TGCCAAAGAT TTCGTACGTC AAATCGATTG 
0421 ACGTCTATCT GGGAACATGC TTCGTTATGG TCTTTGCCAG TCTACTGGAA TACGCCACGG 
0481 TCGGCTACAT GGCAAAACGA  
 Assemble Data 
<PRE>

10537R-2.IR_full       1   ATTTCCCCATGGATCGCCAGCTGTGCCACATTGAAATCGAAAGCTTCGGCTACACGATGC 60
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10537R-2.in silico     1   ATTTCCCCATGGATCGCCAGCTGTGCCACATTGAAATCGAAAGCTTCGGCTACACGATGC 60


10537R-2.IR_full       61  GTGACATCCGCTATAAATGGAACGAAGGCCCCAACTCGGTCGGTGTCTCGAGTGAGGTTT 120
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10537R-2.in silico     61  GTGACATCCGCTATAAATGGAACGAAGGCCCCAACTCGGTCGGTGTCTCGAGTGAGGTTT 120


10537R-2.IR_full       121 CGCTGCCCCAATTTAAGGTCTTGGGTCATCGGCAAAGAGCTATGGAAATCAGTCTTACCA 180
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10537R-2.in silico     121 CGCTGCCCCAATTTAAGGTCTTGGGTCATCGGCAAAGAGCTATGGAAATCAGTCTTACCA 180


10537R-2.IR_full       181 CAGGCAACTATTCGCGTTTAGCCTGCGAAATTCAGTTCGTGCGTTCGATGGGCTACTACC 240
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10537R-2.in silico     181 CAGGCAACTATTCGCGTTTAGCCTGCGAAATTCAGTTCGTGCGTTCGATGGGCTACTACC 240


10537R-2.IR_full       241 TTATACAAATCTACATACCCTCTGGACTGATCGTTATTATATCATGGGTATCATTTTGGC 300
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10537R-2.in silico     241 TTATACAAATCTACATACCCTCTGGACTGATCGTTATTATATCATGGGTATCATTTTGGC 300


10537R-2.IR_full       301 TCAATCGCAATGCAACGCCGGCGCGTGTGGCGCTCGGTGTGACAACCGTGTTGACAATGA 360
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10537R-2.in silico     301 TCAATCGCAATGCAACGCCGGCGCGTGTGGCGCTCGGTGTGACAACCGTGTTGACAATGA 360


10537R-2.IR_full       361 CCACTTTGATGTCGTCAACAAATGCAGCGCTGCCAAAGATTTCGTACGTCAAATCGATTG 420
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10537R-2.in silico     361 CCACTTTGATGTCGTCAACAAATGCAGCGCTGCCAAAGATTTCGTACGTCAAATCGATTG 420


10537R-2.IR_full       421 ACGTCTATCTGGGAACATGCTTCGTTATGGTCTTTGCCAGTCTACTGGAATACGCCACGG 480
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10537R-2.in silico     421 ACGTCTATCTGGGAACATGCTTCGTTATGGTCTTTGCCAGTCTACTGGAATACGCCACGG 480


10537R-2.IR_full       481 TCGGCTACATGGCAAAACGA 500
                           ||||||||||||||||||||
10537R-2.in silico     481 TCGGCTACATGGCAAAACGA 500

</PRE>
 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  0  0  0  NM_168321.1  CG10537-RC, transcript variant C (Rdl), mRNA 
100   482  0  0  0  NM_168322.1  CG10537-RB, transcript variant B (Rdl), mRNA 
69.91   337  15  6  10  NM_079267.2  CG10537-RA, transcript variant A (Rdl), mRNA 
0   0  6  6  8  NM_142570.2  CG7535-RA, transcript variant A (GluClalpha), mRNA 
0   0  6  6  8  NM_001014641.1  CG7535-RC, transcript variant C (GluClalpha), mRNA 
0   0  6  6  8  NM_001038972.1  CG7535-RD, transcript variant D (GluClalpha), mRNA 
0   0  6  6  8  NM_169873.1  CG7535-RB, transcript variant B (GluClalpha), mRNA 
0   0  2  4  2  NM_132087.3  CG15893-RA (CG15893), mRNA 
0   0  1  5  2  NM_141015.1  CG11037-RA (CG11037), mRNA 
0   0  1  4  4  NM_001038712.1  CG33978-RA (CG33978), mRNA 
0   0  1  3  3  NM_135403.1  CG9298-RA (CG9298), mRNA 
0   0  1  3  2  NM_079959.2  CG4501-RA (bgm), mRNA 
0   0  1  2  2  NM_165369.1  CG18362-RD, transcript variant D (Mio), mRNA 
0   0  1  2  2  NM_132061.1  CG5937-RA (CG5937), mRNA 
0   0  1  2  2  NM_165370.1  CG31622-RB, transcript variant B (Gr39a), mRNA 
0   0  1  2  2  NM_167373.1  CG32629-RA (CG32629), mRNA 
0   0  1  2  2  NM_057542.2  CG6205-RA (por), mRNA 
0   0  0  6  2  NM_132112.3  CG4523-RA, transcript variant A (Pink1), mRNA 
0   0  0  6  2  NM_001031881.1  CG4523-RE, transcript variant E (Pink1), mRNA 
0   0  0  6  2  NM_167083.2  CG4523-RB, transcript variant B (Pink1), mRNA 
0   0  0  6  2  NM_001031882.1  CG4523-RD, transcript variant D (Pink1), mRNA 
0   0  0  6  2  NM_001031878.1  CG4523-RH, transcript variant H (Pink1), mRNA 
0   0  0  6  2  NM_001031879.1  CG4523-RG, transcript variant G (Pink1), mRNA 
0   0  0  6  2  NM_001031880.1  CG4523-RF, transcript variant F (Pink1), mRNA 
0   0  0  6  2  NM_001031883.1  CG4523-RC, transcript variant C (Pink1), mRNA 
0   0  0  5  5  NM_139658.2  CG11353-RB, transcript variant B (CG11353), mRNA 
0   0  0  5  5  NM_168093.1  CG11353-RA, transcript variant A (CG11353), mRNA 
0   0  0  4  2  NM_057614.2  CG4926-RA (Ror), mRNA 
0   0  0  4  2  NM_143420.2  CG11888-RA (Rpn2), mRNA 
0   0  0  4  2  NM_142545.1  CG3734-RA (CG3734), mRNA 
 Pathways (updated: 2024/04/26)
 KEGG Pathway dme04080 : Neuroactive ligand-receptor interaction

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