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NIG-RNAi Strains Detail

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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)

Stock ID

10537R-1

Symbol

Rdl

Full Name

Resistant to dieldrin

CG No

CG10537

Old CG No

CG10537

Synonyms

gaba, DmRdl, RDL, GABA[[A]] receptor, DmRDL, CG10537, GABA, LCCH1, unnamed, GABA[[A]], GABAr, Rdl

Accession No (Link to NCBI)

NM_079267.2

Inserted Chr.

lll

Insertional Mutation

Phenotype induced by Act5C-GAL4 at 28 degrees

viable

Map Viewer

Reference
[Please submit your publication]

Comment

Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)

Primer Seq. 5'

aaggcctacatggccggaccgATTTCCCCATGGATCGCCAGC

Primer Seq. 3'

aatctagaggtaccTCGTTTTGCCATGTAGCCGAC

Predicted Fragment Size

IR fragment full Seq

0001 ATTTCCCCAT GGATCGCCAG CTGTGCCACA TTGAAATCGA AAGCTTCGGC TACACGATGC 
0061 GTGACATCCG CTATAAATGG AACGAAGGCC CCAACTCGGT CGGTGTCTCG AGTGAGGTTT 
0121 CGCTGCCCCA ATTTAAGGTC TTGGGTCATC GGCAAAGAGC TATGGAAATC AGTCTTACCA 
0181 CAGGCAACTA TTCGCGTTTA GCCTGCGAAA TTCAGTTCGT GCGTTCGATG GGCTACTACC 
0241 TTATACAAAT CTACATACCC TCTGGACTGA TCGTTATTAT ATCATGGGTA TCATTTTGGC 
0301 TCAATCGCAA TGCAACGCCG GCGCGTGTGG CGCTCGGTGT GACAACCGTG TTGACAATGA 
0361 CCACTTTGAT GTCGTCAACA AATGCAGCGC TGCCAAAGAT TTCGTACGTC AAATCGATTG 
0421 ACGTCTATCT GGGAACATGC TTCGTTATGG TCTTTGCCAG TCTACTGGAA TACGCCACGG 
0481 TCGGCTACAT GGCAAAACGA

in silico PCR Fragment

0001 ATTTCCCCAT GGATCGCCAG CTGTGCCACA TTGAAATCGA AAGCTTCGGC TACACGATGC 
0061 GTGACATCCG CTATAAATGG AACGAAGGCC CCAACTCGGT CGGTGTCTCG AGTGAGGTTT 
0121 CGCTGCCCCA ATTTAAGGTC TTGGGTCATC GGCAAAGAGC TATGGAAATC AGTCTTACCA 
0181 CAGGCAACTA TTCGCGTTTA GCCTGCGAAA TTCAGTTCGT GCGTTCGATG GGCTACTACC 
0241 TTATACAAAT CTACATACCC TCTGGACTGA TCGTTATTAT ATCATGGGTA TCATTTTGGC 
0301 TCAATCGCAA TGCAACGCCG GCGCGTGTGG CGCTCGGTGT GACAACCGTG TTGACAATGA 
0361 CCACTTTGAT GTCGTCAACA AATGCAGCGC TGCCAAAGAT TTCGTACGTC AAATCGATTG 
0421 ACGTCTATCT GGGAACATGC TTCGTTATGG TCTTTGCCAG TCTACTGGAA TACGCCACGG 
0481 TCGGCTACAT GGCAAAACGA

Assemble Data

<PRE>

10537R-1.IR_full       1   ATTTCCCCATGGATCGCCAGCTGTGCCACATTGAAATCGAAAGCTTCGGCTACACGATGC 60
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10537R-1.in silico     1   ATTTCCCCATGGATCGCCAGCTGTGCCACATTGAAATCGAAAGCTTCGGCTACACGATGC 60


10537R-1.IR_full       61  GTGACATCCGCTATAAATGGAACGAAGGCCCCAACTCGGTCGGTGTCTCGAGTGAGGTTT 120
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10537R-1.in silico     61  GTGACATCCGCTATAAATGGAACGAAGGCCCCAACTCGGTCGGTGTCTCGAGTGAGGTTT 120


10537R-1.IR_full       121 CGCTGCCCCAATTTAAGGTCTTGGGTCATCGGCAAAGAGCTATGGAAATCAGTCTTACCA 180
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10537R-1.in silico     121 CGCTGCCCCAATTTAAGGTCTTGGGTCATCGGCAAAGAGCTATGGAAATCAGTCTTACCA 180


10537R-1.IR_full       181 CAGGCAACTATTCGCGTTTAGCCTGCGAAATTCAGTTCGTGCGTTCGATGGGCTACTACC 240
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10537R-1.in silico     181 CAGGCAACTATTCGCGTTTAGCCTGCGAAATTCAGTTCGTGCGTTCGATGGGCTACTACC 240


10537R-1.IR_full       241 TTATACAAATCTACATACCCTCTGGACTGATCGTTATTATATCATGGGTATCATTTTGGC 300
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10537R-1.in silico     241 TTATACAAATCTACATACCCTCTGGACTGATCGTTATTATATCATGGGTATCATTTTGGC 300


10537R-1.IR_full       301 TCAATCGCAATGCAACGCCGGCGCGTGTGGCGCTCGGTGTGACAACCGTGTTGACAATGA 360
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10537R-1.in silico     301 TCAATCGCAATGCAACGCCGGCGCGTGTGGCGCTCGGTGTGACAACCGTGTTGACAATGA 360


10537R-1.IR_full       361 CCACTTTGATGTCGTCAACAAATGCAGCGCTGCCAAAGATTTCGTACGTCAAATCGATTG 420
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10537R-1.in silico     361 CCACTTTGATGTCGTCAACAAATGCAGCGCTGCCAAAGATTTCGTACGTCAAATCGATTG 420


10537R-1.IR_full       421 ACGTCTATCTGGGAACATGCTTCGTTATGGTCTTTGCCAGTCTACTGGAATACGCCACGG 480
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10537R-1.in silico     421 ACGTCTATCTGGGAACATGCTTCGTTATGGTCTTTGCCAGTCTACTGGAATACGCCACGG 480


10537R-1.IR_full       481 TCGGCTACATGGCAAAACGA 500
                           ||||||||||||||||||||
10537R-1.in silico     481 TCGGCTACATGGCAAAACGA 500

</PRE>

Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)

Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch

cv	0mm	1mm	2mm	3mm	target transcript	off target name
100	482	0	0	0	NM_168321.1	CG10537-RC, transcript variant C (Rdl), mRNA
100	482	0	0	0	NM_168322.1	CG10537-RB, transcript variant B (Rdl), mRNA
69.91	337	15	6	10	NM_079267.2	CG10537-RA, transcript variant A (Rdl), mRNA
0	0	6	6	8	NM_142570.2	CG7535-RA, transcript variant A (GluClalpha), mRNA
0	0	6	6	8	NM_001014641.1	CG7535-RC, transcript variant C (GluClalpha), mRNA
0	0	6	6	8	NM_001038972.1	CG7535-RD, transcript variant D (GluClalpha), mRNA
0	0	6	6	8	NM_169873.1	CG7535-RB, transcript variant B (GluClalpha), mRNA
0	0	2	4	2	NM_132087.3	CG15893-RA (CG15893), mRNA
0	0	1	5	2	NM_141015.1	CG11037-RA (CG11037), mRNA
0	0	1	4	4	NM_001038712.1	CG33978-RA (CG33978), mRNA
0	0	1	3	3	NM_135403.1	CG9298-RA (CG9298), mRNA
0	0	1	3	2	NM_079959.2	CG4501-RA (bgm), mRNA
0	0	1	2	2	NM_165369.1	CG18362-RD, transcript variant D (Mio), mRNA
0	0	1	2	2	NM_132061.1	CG5937-RA (CG5937), mRNA
0	0	1	2	2	NM_165370.1	CG31622-RB, transcript variant B (Gr39a), mRNA
0	0	1	2	2	NM_167373.1	CG32629-RA (CG32629), mRNA
0	0	1	2	2	NM_057542.2	CG6205-RA (por), mRNA
0	0	0	6	2	NM_132112.3	CG4523-RA, transcript variant A (Pink1), mRNA
0	0	0	6	2	NM_001031881.1	CG4523-RE, transcript variant E (Pink1), mRNA
0	0	0	6	2	NM_167083.2	CG4523-RB, transcript variant B (Pink1), mRNA
0	0	0	6	2	NM_001031882.1	CG4523-RD, transcript variant D (Pink1), mRNA
0	0	0	6	2	NM_001031878.1	CG4523-RH, transcript variant H (Pink1), mRNA
0	0	0	6	2	NM_001031879.1	CG4523-RG, transcript variant G (Pink1), mRNA
0	0	0	6	2	NM_001031880.1	CG4523-RF, transcript variant F (Pink1), mRNA
0	0	0	6	2	NM_001031883.1	CG4523-RC, transcript variant C (Pink1), mRNA
0	0	0	5	5	NM_139658.2	CG11353-RB, transcript variant B (CG11353), mRNA
0	0	0	5	5	NM_168093.1	CG11353-RA, transcript variant A (CG11353), mRNA
0	0	0	4	2	NM_057614.2	CG4926-RA (Ror), mRNA
0	0	0	4	2	NM_143420.2	CG11888-RA (Rpn2), mRNA
0	0	0	4	2	NM_142545.1	CG3734-RA (CG3734), mRNA

Pathways (updated: 2024/04/26)

KEGG Pathway

dme04080 : Neuroactive ligand-receptor interaction

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