Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
Stock ID |
10043R-3 |
Symbol |
rtGEF |
Full Name |
rho-type guanine exchange factor |
CG No |
CG10043 |
Old CG No |
CG10043 |
Synonyms |
dpix, rhoGEF, 38C.40, DrhoGEF, DrtGEF, RhoGEF, Rho/RacGEF, CG10043, rtGEF, rho-type guanine exchange factor, Drosophila rho-type guanine exchange factor |
Accession No (Link to NCBI) |
NM_001103714 |
Inserted Chr. |
lll |
Insertional Mutation |
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Phenotype induced by Act5C-GAL4 at 28 degrees |
viable |
Map Viewer |
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Reference
[Please submit your publication]
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Comment |
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Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
Primer Seq. 5' |
aaggcctacatggccggaccgACTCTTCGCTAGGACACCTAA |
Primer Seq. 3' |
aatctagaggtaccGGAATCGTTCCGCTTGTTTTG |
Predicted Fragment Size |
500 |
IR fragment full Seq |
0001 ACTCTTCGCT AGGACACCTA AATGCCGCTC ATCCTGAGTC AACATTTGGA TTCACGGGGC
0061 TACTGCACGC GATTCTCGCT GTGTGCCTAT TACTCCAGCC CCCCGTGCCA TGTGCGACCT
0121 CTCCGTGTGA CTCTTCCCCC AAGCAATTAC CCAGCAACAG CTCCGTACGC CAATCTTAGT
0181 GCTCACTTTG CCAGGCTTGT TAAAGGCGGC GGACTGAGGA GTGCTATCGT AAAGATGCTT
0241 CTGTATCCGC AGGCTCGCCA GAGCATCGAA TCTCAAAAGG ATTGCGTTGC GCAAAAGGCG
0301 TTGTCACAAG GCATCTGCAA AGTTAAAAGA TCTCAATACC AATCAGGATT CGGGGCAGTC
0361 CGAGTTGGAA CGACAGGATG CAATTGAACT ACCAACGGAC TCGGAGAGCT ATGACGATGA
0421 CTTTGAAGAT GATTTTTTGC ATTCCTGCGA CTCGGATCCG TTTGAATATG TGCAGTGTTT
0481 TACCAAAACA AGCGGAACGA TTCC |
in silico PCR Fragment |
0001 ACTCTTCGCT AGGACACCTA AATGCCGCTC AT-CTGAGTC AACATTTGGA TTCACGGGGC
0061 TACTGCACGC GATTCTCGCT GTGTGCCTAT TACTCCAGCC CCCCGTGCCA TGTGCGACCT
0121 CTCCGTGTGA CTCTTCCCCC AAGCAATTAC CCAGCAACAG CTCCGTACGC CAATCTTAGT
0181 GCTCACTTTG CCAGGCTTGT TAAAGGCGGC GGACTGAGGA GTGCTATCGT AAAGATGCTT
0241 CTGTATCCGC AGGCTCGCCA GAGCATCG-A TCTCAAAAGG ATTGCGTTGC GCAAAAGGCG
0301 TTGTCACAAG GCATCTGCAA AGTTAAAAGA TCTCAATACC AATCAGGATT CGGGGCAGTC
0361 CGAGTTGGAA CGACAGGATG CAATTGAACT ACCAACGGAC TCGGAGAGCT ATGACGATGA
0421 CTTTGAAGAT GATTTTTTGC ATTCCTGCGA CTCGGATCCG TTTGAATATG TGCA--GTTT
0481 TACCAAAACA AGCGGAACGA TTCC |
Assemble Data |
10043R-3.IR_full 1 ACTCTTCGCTAGGACACCTAAATGCCGCTCATCCTGAGTCAACATTTGGATTCACGGGGC 60
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10043R-3.in silico 1 ACTCTTCGCTAGGACACCTAAATGCCGCTCAT-CTGAGTCAACATTTGGATTCACGGGGC 60
10043R-3.IR_full 61 TACTGCACGCGATTCTCGCTGTGTGCCTATTACTCCAGCCCCCCGTGCCATGTGCGACCT 120
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10043R-3.in silico 61 TACTGCACGCGATTCTCGCTGTGTGCCTATTACTCCAGCCCCCCGTGCCATGTGCGACCT 120
10043R-3.IR_full 121 CTCCGTGTGACTCTTCCCCCAAGCAATTACCCAGCAACAGCTCCGTACGCCAATCTTAGT 180
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10043R-3.in silico 121 CTCCGTGTGACTCTTCCCCCAAGCAATTACCCAGCAACAGCTCCGTACGCCAATCTTAGT 180
10043R-3.IR_full 181 GCTCACTTTGCCAGGCTTGTTAAAGGCGGCGGACTGAGGAGTGCTATCGTAAAGATGCTT 240
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10043R-3.in silico 181 GCTCACTTTGCCAGGCTTGTTAAAGGCGGCGGACTGAGGAGTGCTATCGTAAAGATGCTT 240
10043R-3.IR_full 241 CTGTATCCGCAGGCTCGCCAGAGCATCGAATCTCAAAAGGATTGCGTTGCGCAAAAGGCG 300
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10043R-3.in silico 241 CTGTATCCGCAGGCTCGCCAGAGCATCG-ATCTCAAAAGGATTGCGTTGCGCAAAAGGCG 300
10043R-3.IR_full 301 TTGTCACAAGGCATCTGCAAAGTTAAAAGATCTCAATACCAATCAGGATTCGGGGCAGTC 360
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10043R-3.in silico 301 TTGTCACAAGGCATCTGCAAAGTTAAAAGATCTCAATACCAATCAGGATTCGGGGCAGTC 360
10043R-3.IR_full 361 CGAGTTGGAACGACAGGATGCAATTGAACTACCAACGGACTCGGAGAGCTATGACGATGA 420
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10043R-3.in silico 361 CGAGTTGGAACGACAGGATGCAATTGAACTACCAACGGACTCGGAGAGCTATGACGATGA 420
10043R-3.IR_full 421 CTTTGAAGATGATTTTTTGCATTCCTGCGACTCGGATCCGTTTGAATATGTGCAGTGTTT 480
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10043R-3.in silico 421 CTTTGAAGATGATTTTTTGCATTCCTGCGACTCGGATCCGTTTGAATATGTGCA--GTTT 480
10043R-3.IR_full 481 TACCAAAACAAGCGGAACGATTCC 504
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10043R-3.in silico 481 TACCAAAACAAGCGGAACGATTCC 504
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Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
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