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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 10041R-2 
 Symbol CG10041  Full Name CG10041 
 CG No CG10041  Old CG No CG10041 
 Synonyms SP178, CG10041 
 Accession No (Link to NCBI) NM_141920.1 
 Inserted Chr. ll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees viable 
 Map Viewer
 Reference
[Please submit your publication]
Tiwari P, Kumar A, Das RN, Malhotra V, VijayRaghavan K.
A Tendon Cell Specific RNAi Screen Reveals Novel Candidates Essential for Muscle Tendon Interaction.
PLoS ONE (2015) 10(10) e0140976 [ PubMed ID = 26488612 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgGTGTCGACCACGAAGGTGATA 
 Primer Seq. 3'
aatctagaggtaccTCAAGCGGTTTGAGGAAAACG 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 GTGTCGACCA CGAAGGTGAT AAGTTTCCGC CCTCGTTATC CATACATCGT CTCCATAGGA 
0061 GAGAACCTTA AAGGATACTA CAAGCACCTT TGCGTGGGCG TTATACTTTC GAATGAGTTC 
0121 GTGCTCAGTG CAGCCCACTG CATCCAAACG AATCCAACCA AACAACTGTA CGTGGCTGGT 
0181 GGCGCCGATT CGCTCAACAG CCGGAAGCAG ACCCGCTTCT TCGTCGTGGA AAGAAGATGG 
0241 CATCCCCAGT TTAGGGTGCT CGGCGGCAAC GACATTGCCG TGTTGAGGAT TTACCCCAAA 
0301 TTCCCGCTCG ACGATGTGCG ATTTCGTAGC ATTAACTTTG CTGGAAAGCC ACAAAGGGAT 
0361 AGTGGCACCC AGGCCTCGCT GGTTGGCTGG GGTCGGGTTG GCGTCGGCAA GATAAGAAAA 
0421 CTCCAGGAGA TGCCCTTCTT GACCATGGAG AACGATGAGT GCCAGCAAAG CCATCGCTTC 
0481 GTTTTCCTCA AACCGCTTGA  
 in silico PCR Fragment
0001 GTGTCGACCA CGAAGGTGAT AAGTTTCCGC CCTCGTTATC CATACATCGT CTCCATAGGA 
0061 GAGAACCTTA AAGGATACTA CAAGCACCTT TGCGTGGGCG TTATACTTTC GAATGAGTTC 
0121 GTGCTCAGTG CAGCCCACTG CATCCAAACG AATCCAACCA AACAACTGTA CGTGGCTGGT 
0181 GGCGCCGATT CGCTGAACAG CCGGAAGCAG ACCCGCTTCT TCGTCGTGGA AAGAAGATGG 
0241 CATCCCCAGT TTAGGGTGCT CGGCGGCAAC GACATTGCCG TGTTGAGGAT TTACCCCAAA 
0301 TTCCCGCTCG ACGATGTGCG ATTTCGTAGC ATTAACTTTG CTGGAAAGCC TCAAAGGGAT 
0361 AGTGGCACCC AGGCCTCGCT GGTTGGCTGG GGTCGGGTTG GCGTCGGCAA GATAAGAAAA 
0421 CTCCAGGAGA TGCCCTTCTT GACCATGGAG AACGATGAGT GCCAGCAAAG CCATCGCTTC 
0481 GTTTTCCTCA AACCGCTTGA  
 Assemble Data

10041R-2.IR_full       1   GTGTCGACCACGAAGGTGATAAGTTTCCGCCCTCGTTATCCATACATCGTCTCCATAGGA 60
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10041R-2.in silico     1   GTGTCGACCACGAAGGTGATAAGTTTCCGCCCTCGTTATCCATACATCGTCTCCATAGGA 60


10041R-2.IR_full       61  GAGAACCTTAAAGGATACTACAAGCACCTTTGCGTGGGCGTTATACTTTCGAATGAGTTC 120
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10041R-2.in silico     61  GAGAACCTTAAAGGATACTACAAGCACCTTTGCGTGGGCGTTATACTTTCGAATGAGTTC 120


10041R-2.IR_full       121 GTGCTCAGTGCAGCCCACTGCATCCAAACGAATCCAACCAAACAACTGTACGTGGCTGGT 180
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10041R-2.in silico     121 GTGCTCAGTGCAGCCCACTGCATCCAAACGAATCCAACCAAACAACTGTACGTGGCTGGT 180


10041R-2.IR_full       181 GGCGCCGATTCGCTCAACAGCCGGAAGCAGACCCGCTTCTTCGTCGTGGAAAGAAGATGG 240
                           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
10041R-2.in silico     181 GGCGCCGATTCGCTGAACAGCCGGAAGCAGACCCGCTTCTTCGTCGTGGAAAGAAGATGG 240


10041R-2.IR_full       241 CATCCCCAGTTTAGGGTGCTCGGCGGCAACGACATTGCCGTGTTGAGGATTTACCCCAAA 300
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10041R-2.in silico     241 CATCCCCAGTTTAGGGTGCTCGGCGGCAACGACATTGCCGTGTTGAGGATTTACCCCAAA 300


10041R-2.IR_full       301 TTCCCGCTCGACGATGTGCGATTTCGTAGCATTAACTTTGCTGGAAAGCCACAAAGGGAT 360
                           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
10041R-2.in silico     301 TTCCCGCTCGACGATGTGCGATTTCGTAGCATTAACTTTGCTGGAAAGCCTCAAAGGGAT 360


10041R-2.IR_full       361 AGTGGCACCCAGGCCTCGCTGGTTGGCTGGGGTCGGGTTGGCGTCGGCAAGATAAGAAAA 420
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10041R-2.in silico     361 AGTGGCACCCAGGCCTCGCTGGTTGGCTGGGGTCGGGTTGGCGTCGGCAAGATAAGAAAA 420


10041R-2.IR_full       421 CTCCAGGAGATGCCCTTCTTGACCATGGAGAACGATGAGTGCCAGCAAAGCCATCGCTTC 480
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10041R-2.in silico     421 CTCCAGGAGATGCCCTTCTTGACCATGGAGAACGATGAGTGCCAGCAAAGCCATCGCTTC 480


10041R-2.IR_full       481 GTTTTCCTCAAACCGCTTGA 500
                           ||||||||||||||||||||
10041R-2.in silico     481 GTTTTCCTCAAACCGCTTGA 500

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  NM_141920.1  CG10041-RA (CG10041), mRNA 
0   NM_142437.2  CG7993-RA (CG7993), mRNA 
0   NM_132888.1  CG13957-RA (CG13957), mRNA 
0   NM_139661.2  CG7471-RA (Rpd3), mRNA 
0   NM_058151.4  CG6551-RA (fu), mRNA 
0   NM_165975.1  CG4712-RA, transcript variant A (CG4712), mRNA 
0   NM_132912.1  CG4521-RA (mthl1), mRNA 
0   NM_137012.1  CG4712-RB, transcript variant B (CG4712), mRNA 
0   NM_170199.1  CG11836-RB, transcript variant B (CG11836), mRNA 
0   NM_143076.2  CG11836-RA, transcript variant A (CG11836), mRNA 
0   NM_166542.1  CG30273-RA (CG30273), mRNA 
0   NM_057782.3  CG3954-RA, transcript variant A (csw), mRNA 
0   NM_135460.1  CG15828-RA, transcript variant A (CG15828), mRNA 
0   NM_079469.2  CG10573-RA (ko), mRNA 
0   NM_205948.1  CG15828-RB, transcript variant B (CG15828), mRNA 
0   NM_141666.2  CG9492-RA (CG9492), mRNA 
0   NM_130658.2  CG10260-RB (CG10260), mRNA 
0   NM_131960.1  CG6978-RA (CG6978), mRNA 
0   NM_143725.2  CG18039-RA (KaiRIA), mRNA 
0   NM_176739.1  CG33173-RA (CG33173), mRNA 
0   NM_164469.1  CG17239-RA (CG17239), mRNA 
0   NM_143083.2  CG10238-RA (CG10238), mRNA 
0   NM_130645.2  CG14047-RA, transcript variant A (CG14047), mRNA 
0   NM_206610.1  CG14047-RB, transcript variant B (CG14047), mRNA 
0   NM_143340.2  CG5508-RA, transcript variant A (CG5508), mRNA 
0   NM_078873.2  CG15162-RA (MESR3), mRNA 
0   NM_058072.3  CG8432-RA (Rep), mRNA 
0   NM_136595.1  CG13744-RA (CG13744), mRNA 
0   12  NM_168809.1  CG8756-RA, transcript variant A (LCBP1), mRNA 
0   12  NM_168808.1  CG8756-RC, transcript variant C (LCBP1), mRNA 

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