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NIG-RNAi Strains Detail |
Request : Click the "Order" button to request for this stock |
discarded
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
Stock ID |
10041R-3 |
Symbol |
CG10041 |
Full Name |
CG10041 |
CG No |
CG10041 |
Old CG No |
CG10041 |
Synonyms |
SP178, CG10041 |
Accession No (Link to NCBI) |
NM_141920.1 |
Inserted Chr. |
ll |
Insertional Mutation |
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Phenotype induced by Act5C-GAL4 at 28 degrees |
viable |
Map Viewer |
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Reference
[Please submit your publication]
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Tiwari P, Kumar A, Das RN, Malhotra V, VijayRaghavan K. A Tendon Cell Specific RNAi Screen Reveals Novel Candidates Essential for Muscle Tendon Interaction. PLoS One (2015) 10(10) e0140976
[
PubMed ID = 26488612
]
[
RRC reference
]
Umemori M, Habara O, Iwata T, Maeda K, Nishinoue K, Okabe A, Takemura M, Takahashi K, Saigo K, Ueda R, Adachi-Yamada T. RNAi-mediated knockdown showing impaired cell survival in Drosophila wing imaginal disc. Gene Regul Syst Bio (2009) 3 11-20
[
PubMed ID = 19838331
]
[
RRC reference
]
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Comment |
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Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
Primer Seq. 5' |
aaggcctacatggccggaccgGTGTCGACCACGAAGGTGATA |
Primer Seq. 3' |
aatctagaggtaccTCAAGCGGTTTGAGGAAAACG |
Predicted Fragment Size |
500 |
IR fragment full Seq |
0001 GTGTCGACCA CGAAGGTGAT AAGTTTCCGC CCTCGTTATC CATACATCGT CTCCATAGGA
0061 GAGAACCTTA AAGGATACTA CAAGCACCTT TGCGTGGGCG TTATACTTTC GAATGAGTTC
0121 GTGCTCAGTG CAGCCCACTG CATCCAAACG AATCCAACCA AACAACTGTA CGTGGCTGGT
0181 GGCGCCGATT CGCTCAACAG CCGGAAGCAG ACCCGCTTCT TCGTCGTGGA AAGAAGATGG
0241 CATCCCCAGT TTAGGGTGCT CGGCGGCAAC GACATTGCCG TGTTGAGGAT TTACCCCAAA
0301 TTCCCGCTCG ACGATGTGCG ATTTCGTAGC ATTAACTTTG CTGGAAAGCC ACAAAGGGAT
0361 AGTGGCACCC AGGCCTCGCT GGTTGGCTGG GGTCGGGTTG GCGTCGGCAA GATAAGAAAA
0421 CTCCAGGAGA TGCCCTTCTT GACCATGGAG AACGATGAGT GCCAGCAAAG CCATCGCTTC
0481 GTTTTCCTCA AACCGCTTGA |
in silico PCR Fragment |
0001 GTGTCGACCA CGAAGGTGAT AAGTTTCCGC CCTCGTTATC CATACATCGT CTCCATAGGA
0061 GAGAACCTTA AAGGATACTA CAAGCACCTT TGCGTGGGCG TTATACTTTC GAATGAGTTC
0121 GTGCTCAGTG CAGCCCACTG CATCCAAACG AATCCAACCA AACAACTGTA CGTGGCTGGT
0181 GGCGCCGATT CGCTGAACAG CCGGAAGCAG ACCCGCTTCT TCGTCGTGGA AAGAAGATGG
0241 CATCCCCAGT TTAGGGTGCT CGGCGGCAAC GACATTGCCG TGTTGAGGAT TTACCCCAAA
0301 TTCCCGCTCG ACGATGTGCG ATTTCGTAGC ATTAACTTTG CTGGAAAGCC TCAAAGGGAT
0361 AGTGGCACCC AGGCCTCGCT GGTTGGCTGG GGTCGGGTTG GCGTCGGCAA GATAAGAAAA
0421 CTCCAGGAGA TGCCCTTCTT GACCATGGAG AACGATGAGT GCCAGCAAAG CCATCGCTTC
0481 GTTTTCCTCA AACCGCTTGA |
Assemble Data |
10041R-3.IR_full 1 GTGTCGACCACGAAGGTGATAAGTTTCCGCCCTCGTTATCCATACATCGTCTCCATAGGA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10041R-3.in silico 1 GTGTCGACCACGAAGGTGATAAGTTTCCGCCCTCGTTATCCATACATCGTCTCCATAGGA 60
10041R-3.IR_full 61 GAGAACCTTAAAGGATACTACAAGCACCTTTGCGTGGGCGTTATACTTTCGAATGAGTTC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10041R-3.in silico 61 GAGAACCTTAAAGGATACTACAAGCACCTTTGCGTGGGCGTTATACTTTCGAATGAGTTC 120
10041R-3.IR_full 121 GTGCTCAGTGCAGCCCACTGCATCCAAACGAATCCAACCAAACAACTGTACGTGGCTGGT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10041R-3.in silico 121 GTGCTCAGTGCAGCCCACTGCATCCAAACGAATCCAACCAAACAACTGTACGTGGCTGGT 180
10041R-3.IR_full 181 GGCGCCGATTCGCTCAACAGCCGGAAGCAGACCCGCTTCTTCGTCGTGGAAAGAAGATGG 240
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
10041R-3.in silico 181 GGCGCCGATTCGCTGAACAGCCGGAAGCAGACCCGCTTCTTCGTCGTGGAAAGAAGATGG 240
10041R-3.IR_full 241 CATCCCCAGTTTAGGGTGCTCGGCGGCAACGACATTGCCGTGTTGAGGATTTACCCCAAA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10041R-3.in silico 241 CATCCCCAGTTTAGGGTGCTCGGCGGCAACGACATTGCCGTGTTGAGGATTTACCCCAAA 300
10041R-3.IR_full 301 TTCCCGCTCGACGATGTGCGATTTCGTAGCATTAACTTTGCTGGAAAGCCACAAAGGGAT 360
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
10041R-3.in silico 301 TTCCCGCTCGACGATGTGCGATTTCGTAGCATTAACTTTGCTGGAAAGCCTCAAAGGGAT 360
10041R-3.IR_full 361 AGTGGCACCCAGGCCTCGCTGGTTGGCTGGGGTCGGGTTGGCGTCGGCAAGATAAGAAAA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10041R-3.in silico 361 AGTGGCACCCAGGCCTCGCTGGTTGGCTGGGGTCGGGTTGGCGTCGGCAAGATAAGAAAA 420
10041R-3.IR_full 421 CTCCAGGAGATGCCCTTCTTGACCATGGAGAACGATGAGTGCCAGCAAAGCCATCGCTTC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10041R-3.in silico 421 CTCCAGGAGATGCCCTTCTTGACCATGGAGAACGATGAGTGCCAGCAAAGCCATCGCTTC 480
10041R-3.IR_full 481 GTTTTCCTCAAACCGCTTGA 500
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10041R-3.in silico 481 GTTTTCCTCAAACCGCTTGA 500
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Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
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cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
100 |
482 |
0 |
0 |
0 |
NM_141920.1 |
CG10041-RA (CG10041), mRNA |
0 |
0 |
4 |
2 |
4 |
NM_142437.2 |
CG7993-RA (CG7993), mRNA |
0 |
0 |
2 |
3 |
2 |
NM_132888.1 |
CG13957-RA (CG13957), mRNA |
0 |
0 |
2 |
2 |
4 |
NM_139661.2 |
CG7471-RA (Rpd3), mRNA |
0 |
0 |
1 |
4 |
2 |
NM_058151.4 |
CG6551-RA (fu), mRNA |
0 |
0 |
1 |
3 |
3 |
NM_165975.1 |
CG4712-RA, transcript variant A (CG4712), mRNA |
0 |
0 |
1 |
3 |
3 |
NM_132912.1 |
CG4521-RA (mthl1), mRNA |
0 |
0 |
1 |
3 |
3 |
NM_137012.1 |
CG4712-RB, transcript variant B (CG4712), mRNA |
0 |
0 |
1 |
3 |
3 |
NM_170199.1 |
CG11836-RB, transcript variant B (CG11836), mRNA |
0 |
0 |
1 |
3 |
3 |
NM_143076.2 |
CG11836-RA, transcript variant A (CG11836), mRNA |
0 |
0 |
1 |
3 |
2 |
NM_166542.1 |
CG30273-RA (CG30273), mRNA |
0 |
0 |
1 |
3 |
2 |
NM_057782.3 |
CG3954-RA, transcript variant A (csw), mRNA |
0 |
0 |
1 |
2 |
4 |
NM_135460.1 |
CG15828-RA, transcript variant A (CG15828), mRNA |
0 |
0 |
1 |
2 |
4 |
NM_079469.2 |
CG10573-RA (ko), mRNA |
0 |
0 |
1 |
2 |
4 |
NM_205948.1 |
CG15828-RB, transcript variant B (CG15828), mRNA |
0 |
0 |
1 |
2 |
4 |
NM_141666.2 |
CG9492-RA (CG9492), mRNA |
0 |
0 |
1 |
2 |
2 |
NM_130658.2 |
CG10260-RB (CG10260), mRNA |
0 |
0 |
1 |
2 |
2 |
NM_131960.1 |
CG6978-RA (CG6978), mRNA |
0 |
0 |
1 |
2 |
2 |
NM_143725.2 |
CG18039-RA (KaiRIA), mRNA |
0 |
0 |
0 |
6 |
9 |
NM_176739.1 |
CG33173-RA (CG33173), mRNA |
0 |
0 |
0 |
4 |
4 |
NM_164469.1 |
CG17239-RA (CG17239), mRNA |
0 |
0 |
0 |
4 |
4 |
NM_143083.2 |
CG10238-RA (CG10238), mRNA |
0 |
0 |
0 |
4 |
3 |
NM_130645.2 |
CG14047-RA, transcript variant A (CG14047), mRNA |
0 |
0 |
0 |
4 |
3 |
NM_206610.1 |
CG14047-RB, transcript variant B (CG14047), mRNA |
0 |
0 |
0 |
4 |
2 |
NM_143340.2 |
CG5508-RA, transcript variant A (CG5508), mRNA |
0 |
0 |
0 |
4 |
2 |
NM_078873.2 |
CG15162-RA (MESR3), mRNA |
0 |
0 |
0 |
4 |
2 |
NM_058072.3 |
CG8432-RA (Rep), mRNA |
0 |
0 |
0 |
4 |
2 |
NM_136595.1 |
CG13744-RA (CG13744), mRNA |
0 |
0 |
0 |
3 |
12 |
NM_168809.1 |
CG8756-RA, transcript variant A (LCBP1), mRNA |
0 |
0 |
0 |
3 |
12 |
NM_168808.1 |
CG8756-RC, transcript variant C (LCBP1), mRNA |
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Wing Disc |
GFP
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Puc
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Caspase
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DAPI
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Merge
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Figure
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JNK signal
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Caspase-3 signal
N |
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++ |
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DB |
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+ |
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DC |
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++ |
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DM |
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+ |
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VM |
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+ |
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VB |
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