Notice:
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Suspension of shipments during Golden Week Holidays: From 30 April to 14 May, deadline 17 April.
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NIG-RNAi Strains Detail |
Request : Click the "Order" button to request for this stock |
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
Stock ID |
10055R-1 |
Symbol |
CG10055 |
Full Name |
CG10055 |
CG No |
CG10055 |
Old CG No |
CG10055 |
Synonyms |
RE52393, CG10055 |
Accession No (Link to NCBI) |
NM_141446.1 |
Inserted Chr. |
lll |
Insertional Mutation |
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Phenotype induced by Act5C-GAL4 at 28 degrees |
lethal |
Map Viewer |
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Reference
[Please submit your publication]
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Tiwari P, Kumar A, Das RN, Malhotra V, VijayRaghavan K. A Tendon Cell Specific RNAi Screen Reveals Novel Candidates Essential for Muscle Tendon Interaction. PLoS One (2015) 10(10) e0140976
[
PubMed ID = 26488612
]
[
RRC reference
]
Umemori M, Habara O, Iwata T, Maeda K, Nishinoue K, Okabe A, Takemura M, Takahashi K, Saigo K, Ueda R, Adachi-Yamada T. RNAi-mediated knockdown showing impaired cell survival in Drosophila wing imaginal disc. Gene Regul Syst Bio (2009) 3 11-20
[
PubMed ID = 19838331
]
[
RRC reference
]
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Comment |
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Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
Primer Seq. 5' |
aaggcctacatggccggaccgAGCAGCTGCTGCTGCTTCTTC |
Primer Seq. 3' |
aatctagaggtaccTCAGCTTGTAGGTGCGCTCGT |
Predicted Fragment Size |
500 |
IR fragment full Seq |
0001 AGCAGCTGCT GCTgCTTCTT CTTCCGCTGG TGAGGTGTTT GGTCAGGAAG CGGGGTCGGG
0061 GNTTGGCGGA AGNGGAGGCG TTGCATGTGG ATCGCATAAG AAACTGCGAT ATATTCGTTG
0121 ACGCGCACGA TCTTTATTTC TACGCAGATG TTAAGCTGTA CAAATTCCAC AAGCCGTCGC
0181 ACCTTCGACT TGCGAGAGCT GAAGACGCTG TTGATAAAGT TCAACACGAC AGAGAATCAC
0241 TACCAAATTT GCCTGCGCTG TCTGCCCCTA ACAGCGGGTG CCCAGGAAGG ACCCGGTGGA
0301 GAAAGAGGCG GAGACGGTGG TACGGGGGAT GCAGCCAAGC AGTGGAATAG TCGCAAAGAG
0361 TACATAGCCG CATTCCTGCA CCTACCCACA CTGAGTGCCA ATTTGCCGGA CAAGCAGCCT
0421 CTGGTGCAGG AATGGAAACT CAAACGAATC ACCGATCAGT GCCAATTGCA GCTCGACGAC
0481 CACGAGCGCA CCTACAAGCT GA |
in silico PCR Fragment |
0001 AGCAGCTGCT GCTGCTTCTT CTTCCGCTGG TGAGGAGTTT GGTCAGGAAG CGGGGTCGGG
0061 G-TTGGCGGA AGCGGAGGCG TTGCATGTGG ATCGCATAAG AAACTGCGAT ATATTCGTTG
0121 ACGCGCACGA TCTTTATTTC TACGCAGATG TTAAGCTGTA CAAATTCCAC -AGCCGTCGC
0181 ACCTTCGACT TGCGAGAGCT GAAGACGCTG TTGATAAAGT TCAACACGAC AGAGAATCAC
0241 TACCAAATTT GCCTGCGCTG TCTGCCCCTA ACAGCGGGTG CCCAGGAAGG ACCCGGTGGA
0301 GAAAGAGGCG GAGGCGGTGG TACGGGGGAT GCAGCCAAGC AGTGGAATAG TCGCAAAGAG
0361 TACATAGCCG CATTCCTGCA CCTACCCACA CTGAGTGCCA ATTTGCCGGA CAAGCAGCCT
0421 CTGGTGCAGG AATGGAAACT CAAACGAATC ACCGATCAGT GCCAATTGCA GCTCGACGAC
0481 CACGAGCGCA CCTACAAGCT GA |
Assemble Data |
10055R-1.IR_full 1 AGCAGCTGCTGCTGCTTCTTCTTCCGCTGGTGAGGTGTTTGGTCAGGAAGCGGGGTCGGG 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
10055R-1.in silico 1 AGCAGCTGCTGCTGCTTCTTCTTCCGCTGGTGAGGAGTTTGGTCAGGAAGCGGGGTCGGG 60
10055R-1.IR_full 61 GNTTGGCGGAAGNGGAGGCGTTGCATGTGGATCGCATAAGAAACTGCGATATATTCGTTG 120
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10055R-1.in silico 61 G-TTGGCGGAAGCGGAGGCGTTGCATGTGGATCGCATAAGAAACTGCGATATATTCGTTG 120
10055R-1.IR_full 121 ACGCGCACGATCTTTATTTCTACGCAGATGTTAAGCTGTACAAATTCCACAAGCCGTCGC 180
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
10055R-1.in silico 121 ACGCGCACGATCTTTATTTCTACGCAGATGTTAAGCTGTACAAATTCCAC-AGCCGTCGC 180
10055R-1.IR_full 181 ACCTTCGACTTGCGAGAGCTGAAGACGCTGTTGATAAAGTTCAACACGACAGAGAATCAC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10055R-1.in silico 181 ACCTTCGACTTGCGAGAGCTGAAGACGCTGTTGATAAAGTTCAACACGACAGAGAATCAC 240
10055R-1.IR_full 241 TACCAAATTTGCCTGCGCTGTCTGCCCCTAACAGCGGGTGCCCAGGAAGGACCCGGTGGA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10055R-1.in silico 241 TACCAAATTTGCCTGCGCTGTCTGCCCCTAACAGCGGGTGCCCAGGAAGGACCCGGTGGA 300
10055R-1.IR_full 301 GAAAGAGGCGGAGACGGTGGTACGGGGGATGCAGCCAAGCAGTGGAATAGTCGCAAAGAG 360
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
10055R-1.in silico 301 GAAAGAGGCGGAGGCGGTGGTACGGGGGATGCAGCCAAGCAGTGGAATAGTCGCAAAGAG 360
10055R-1.IR_full 361 TACATAGCCGCATTCCTGCACCTACCCACACTGAGTGCCAATTTGCCGGACAAGCAGCCT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10055R-1.in silico 361 TACATAGCCGCATTCCTGCACCTACCCACACTGAGTGCCAATTTGCCGGACAAGCAGCCT 420
10055R-1.IR_full 421 CTGGTGCAGGAATGGAAACTCAAACGAATCACCGATCAGTGCCAATTGCAGCTCGACGAC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10055R-1.in silico 421 CTGGTGCAGGAATGGAAACTCAAACGAATCACCGATCAGTGCCAATTGCAGCTCGACGAC 480
10055R-1.IR_full 481 CACGAGCGCACCTACAAGCTGA 502
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10055R-1.in silico 481 CACGAGCGCACCTACAAGCTGA 502
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Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
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cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
100 |
482 |
0 |
9 |
7 |
NM_141446.1 |
CG10055-RA (CG10055), mRNA |
0.62 |
3 |
5 |
6 |
15 |
NM_142431.1 |
CG7187-RA, transcript variant A (Ssdp), mRNA |
0.62 |
3 |
5 |
6 |
15 |
NM_169794.1 |
CG7187-RB, transcript variant B (Ssdp), mRNA |
0.62 |
3 |
5 |
5 |
13 |
NM_169795.1 |
CG7187-RC, transcript variant C (Ssdp), mRNA |
0.41 |
2 |
5 |
10 |
10 |
NM_167373.1 |
CG32629-RA (CG32629), mRNA |
0.41 |
2 |
5 |
7 |
10 |
NM_170155.1 |
CG31127-RA (Wsck), mRNA |
0.41 |
2 |
5 |
4 |
22 |
NM_001014537.1 |
CG15112-RD, transcript variant D (ena), mRNA |
0.41 |
2 |
5 |
4 |
22 |
NM_166329.1 |
CG15112-RA, transcript variant A (ena), mRNA |
0.41 |
2 |
5 |
4 |
22 |
NM_001014536.1 |
CG15112-RE, transcript variant E (ena), mRNA |
0.41 |
2 |
5 |
4 |
22 |
NM_166330.1 |
CG15112-RC, transcript variant C (ena), mRNA |
0.41 |
2 |
4 |
8 |
21 |
NM_142622.1 |
CG4360-RA (CG4360), mRNA |
0.41 |
2 |
3 |
6 |
12 |
NM_132936.2 |
CG4768-RA (CG4768), mRNA |
0.41 |
2 |
2 |
5 |
8 |
NM_057632.3 |
CG10072-RA (sgl), mRNA |
0.2 |
1 |
6 |
7 |
13 |
NM_168648.1 |
CG32156-RB, transcript variant B (Mbs), mRNA |
0.2 |
1 |
6 |
7 |
12 |
NM_168646.1 |
CG32156-RC, transcript variant C (Mbs), mRNA |
0.2 |
1 |
4 |
10 |
18 |
NM_080335.2 |
CG2984-RA (Pp2C1), mRNA |
0.2 |
1 |
4 |
9 |
44 |
NM_078601.2 |
CG9533-RA (rut), mRNA |
0 |
0 |
5 |
12 |
48 |
NM_132959.2 |
CG8949-RA (CG8949), mRNA |
0 |
0 |
5 |
7 |
21 |
NM_170350.1 |
CG12878-RB, transcript variant B (btz), mRNA |
0 |
0 |
5 |
5 |
18 |
NM_134510.1 |
CG12703-RA (CG12703), mRNA |
0 |
0 |
4 |
3 |
6 |
NM_136033.2 |
CG12750-RA (ncm), mRNA |
0 |
0 |
3 |
11 |
13 |
NM_167032.1 |
CG10706-RB, transcript variant B (SK), mRNA |
0 |
0 |
3 |
11 |
13 |
NM_167031.1 |
CG10706-RA, transcript variant A (SK), mRNA |
0 |
0 |
3 |
11 |
13 |
NM_206631.1 |
CG10706-RF, transcript variant F (SK), mRNA |
0 |
0 |
3 |
11 |
13 |
NM_167029.1 |
CG10706-RC, transcript variant C (SK), mRNA |
0 |
0 |
3 |
7 |
14 |
NM_166992.2 |
CG2904-RA (ec), mRNA |
0 |
0 |
3 |
6 |
9 |
NM_133104.2 |
CG7282-RA (CG7282), mRNA |
0 |
0 |
3 |
4 |
5 |
NM_001038879.1 |
CG11303-RB, transcript variant B (TM4SF), mRNA |
0 |
0 |
3 |
4 |
5 |
NM_057900.3 |
CG11303-RA, transcript variant A (TM4SF), mRNA |
0 |
0 |
2 |
13 |
18 |
NM_057309.2 |
CG6534-RA (slou), mRNA |
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Wing Disc |
GFP
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Puc
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Caspase
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DAPI
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Merge
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Figure
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JNK signal
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Caspase-3 signal
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