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NIG-RNAi Strains Detail |
Request : Click the "Order" button to request for this stock |
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
Stock ID |
10042R-2 |
Symbol |
MBD-R2 |
Full Name |
MBD-R2 |
CG No |
CG10042 |
Old CG No |
CG10042 |
Synonyms |
dMBD-R2, TAM3, Dm Tam3, CG10042, MBD, CG17393, MBD-R2 |
Accession No (Link to NCBI) |
NM_141921.1 |
Inserted Chr. |
ll |
Insertional Mutation |
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Phenotype induced by Act5C-GAL4 at 28 degrees |
lethal |
Map Viewer |
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Reference
[Please submit your publication]
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Umemori M, Habara O, Iwata T, Maeda K, Nishinoue K, Okabe A, Takemura M, Takahashi K, Saigo K, Ueda R, Adachi-Yamada T. RNAi-mediated knockdown showing impaired cell survival in Drosophila wing imaginal disc. Gene Regul Syst Bio (2009) 3 11-20
[
PubMed ID = 19838331
]
[
RRC reference
]
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Comment |
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Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
Primer Seq. 5' |
aaggcctacatggccggaccgCAGCGTGGAGGGAACGACTGA |
Primer Seq. 3' |
aatctagaggtaccTGGCCATCCACTCCTGAAAGC |
Predicted Fragment Size |
500 |
IR fragment full Seq |
0001 CAGCGTGGAG GGAACGACTG AAACCCCGGG AAATGCTCAG TCATCGACCA ATGACGATGT
0061 GATCAAAGCT ACGGTAGACC AAATAGTTGC GCAAATCCTG TCGGAATCTG CAGAACGCAA
0121 GGCCACGGAG GAAGGTAAAA CAGGCAAGGC GGCGGATGAC GTTAAAAATA CTCCCGAAAG
0181 TGGAGAAGAT GCAAACAAGG CAGCTGCAAA GGAACCCTCA GGGACTCCGG TAGCCGCAAG
0241 CAGCGAAGCC ACAGTCCCAG CTCCTGGATC CGCTTTCCAG TTCGAACTCA CCTTTGCCCG
0301 GCACACCGCC CAAGTACAGC AACCCACATA ACCTGACTAT TGGCGCCCGT TTGGAGGCGC
0361 TCAGTGTGGA AGGCAACTGG TTGCCCGCCC GCATCGTGGA AGTTAACGAG ACGGAGCAGA
0421 CGCTACTCNT GCGCTTTGAG CGCAATCACA AGCTAAAGGT GTCACCTTCG ACCAGCGGCA
0481 GCTTTCAGGA GTGGATGGCC A |
in silico PCR Fragment |
0001 CAGCGTGGAG GGAACGACTG AAACCCCGGG AAATGCTCAG TCATCGACCA ATGACGATGT
0061 GATCAAAGCT ACGGTAGACC AAATAGTTGC GCAAATCCTG TCGGAATCTG CAGAACGCAA
0121 GGCCACGGAG GAAGGTAAAA CAGGCAAGGC GGCGGATGAC GTTAAAAATA CTCCCGAAAG
0181 TGGAGAAGAT GCAAACAAGG CAGCTGCAAA GGAACCCTCA GGGACTCCGG TAGCCGCAAG
0241 CAGCGAAGCC ACAGTCCCAG CTCCTGGATC CGC-TTCCAG TTCGAACTCA CCTTTGCCCG
0301 GCACACCGCC CAAGTACAGC AACCCACATA ACCTGACTAT TGGCGCCCGT TTGGAGGCGC
0361 TCAGTGTGGA AGGCAACTGG TTGCCCGCCC GCATCGTGGA AGTTAACGAG ACGGAGCAGA
0421 CGCTACTCGT GCGCTTTGAG CGCAATCACA AGCTAAAGGT GTCACCTTCG ACCAGCGGCA
0481 GCTTTCAGGA GTGGATGGCC A |
Assemble Data |
10042R-2.IR_full 1 CAGCGTGGAGGGAACGACTGAAACCCCGGGAAATGCTCAGTCATCGACCAATGACGATGT 60
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10042R-2.in silico 1 CAGCGTGGAGGGAACGACTGAAACCCCGGGAAATGCTCAGTCATCGACCAATGACGATGT 60
10042R-2.IR_full 61 GATCAAAGCTACGGTAGACCAAATAGTTGCGCAAATCCTGTCGGAATCTGCAGAACGCAA 120
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10042R-2.in silico 61 GATCAAAGCTACGGTAGACCAAATAGTTGCGCAAATCCTGTCGGAATCTGCAGAACGCAA 120
10042R-2.IR_full 121 GGCCACGGAGGAAGGTAAAACAGGCAAGGCGGCGGATGACGTTAAAAATACTCCCGAAAG 180
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10042R-2.in silico 121 GGCCACGGAGGAAGGTAAAACAGGCAAGGCGGCGGATGACGTTAAAAATACTCCCGAAAG 180
10042R-2.IR_full 181 TGGAGAAGATGCAAACAAGGCAGCTGCAAAGGAACCCTCAGGGACTCCGGTAGCCGCAAG 240
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10042R-2.in silico 181 TGGAGAAGATGCAAACAAGGCAGCTGCAAAGGAACCCTCAGGGACTCCGGTAGCCGCAAG 240
10042R-2.IR_full 241 CAGCGAAGCCACAGTCCCAGCTCCTGGATCCGCTTTCCAGTTCGAACTCACCTTTGCCCG 300
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10042R-2.in silico 241 CAGCGAAGCCACAGTCCCAGCTCCTGGATCCGC-TTCCAGTTCGAACTCACCTTTGCCCG 300
10042R-2.IR_full 301 GCACACCGCCCAAGTACAGCAACCCACATAACCTGACTATTGGCGCCCGTTTGGAGGCGC 360
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10042R-2.in silico 301 GCACACCGCCCAAGTACAGCAACCCACATAACCTGACTATTGGCGCCCGTTTGGAGGCGC 360
10042R-2.IR_full 361 TCAGTGTGGAAGGCAACTGGTTGCCCGCCCGCATCGTGGAAGTTAACGAGACGGAGCAGA 420
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10042R-2.in silico 361 TCAGTGTGGAAGGCAACTGGTTGCCCGCCCGCATCGTGGAAGTTAACGAGACGGAGCAGA 420
10042R-2.IR_full 421 CGCTACTCNTGCGCTTTGAGCGCAATCACAAGCTAAAGGTGTCACCTTCGACCAGCGGCA 480
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10042R-2.in silico 421 CGCTACTCGTGCGCTTTGAGCGCAATCACAAGCTAAAGGTGTCACCTTCGACCAGCGGCA 480
10042R-2.IR_full 481 GCTTTCAGGAGTGGATGGCCA 501
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10042R-2.in silico 481 GCTTTCAGGAGTGGATGGCCA 501
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Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
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cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
100 |
482 |
0 |
0 |
0 |
NM_169461.1 |
CG10042-RB, transcript variant B (MBD-R2), mRNA |
100 |
482 |
0 |
0 |
0 |
NM_141921.1 |
CG10042-RA, transcript variant A (MBD-R2), mRNA |
0 |
0 |
4 |
2 |
3 |
NM_135493.2 |
CG13131-RA (CG13131), mRNA |
0 |
0 |
3 |
6 |
12 |
NM_131926.1 |
CG15570-RA (CG15570), mRNA |
0 |
0 |
3 |
2 |
3 |
NM_206516.1 |
CG14307-RI, transcript variant I (fru), mRNA |
0 |
0 |
3 |
2 |
3 |
NM_169819.1 |
CG14307-RE, transcript variant E (fru), mRNA |
0 |
0 |
3 |
2 |
3 |
NM_169820.1 |
CG14307-RC, transcript variant C (fru), mRNA |
0 |
0 |
3 |
2 |
3 |
NM_206515.1 |
CG14307-RJ, transcript variant J (fru), mRNA |
0 |
0 |
3 |
2 |
3 |
NM_206513.1 |
CG14307-RL, transcript variant L (fru), mRNA |
0 |
0 |
3 |
2 |
3 |
NM_206512.1 |
CG14307-RM, transcript variant M (fru), mRNA |
0 |
0 |
2 |
5 |
3 |
NM_167466.1 |
CG9012-RB, transcript variant B (Chc), mRNA |
0 |
0 |
2 |
5 |
3 |
NM_057694.2 |
CG9012-RA, transcript variant A (Chc), mRNA |
0 |
0 |
2 |
5 |
3 |
NM_206729.1 |
CG9012-RC, transcript variant C (Chc), mRNA |
0 |
0 |
2 |
5 |
3 |
NM_206728.1 |
CG9012-RD, transcript variant D (Chc), mRNA |
0 |
0 |
2 |
3 |
2 |
NM_138115.2 |
CG30421-RA (CG30421), mRNA |
0 |
0 |
2 |
2 |
3 |
NM_138031.1 |
CG3173-RA (CG3173), mRNA |
0 |
0 |
1 |
5 |
3 |
NM_139753.1 |
CG10477-RA (CG10477), mRNA |
0 |
0 |
1 |
3 |
3 |
NM_057797.2 |
CG10387-RA (tos), mRNA |
0 |
0 |
1 |
2 |
4 |
NM_140957.2 |
CG5528-RA (Toll-9), mRNA |
0 |
0 |
1 |
2 |
2 |
NM_001043294.1 |
CG34130-RA (CG34130), mRNA |
0 |
0 |
1 |
2 |
2 |
NM_139456.2 |
CG8985-RA (DmsR-1), mRNA |
0 |
0 |
0 |
7 |
4 |
NM_079439.2 |
CG9383-RA (asf1), mRNA |
0 |
0 |
0 |
5 |
4 |
NM_058151.4 |
CG6551-RA (fu), mRNA |
0 |
0 |
0 |
5 |
4 |
NM_079378.2 |
CG5444-RA, transcript variant A (Taf4), mRNA |
0 |
0 |
0 |
5 |
4 |
NM_176333.1 |
CG5444-RC, transcript variant C (Taf4), mRNA |
0 |
0 |
0 |
5 |
4 |
NM_206379.1 |
CG5444-RD, transcript variant D (Taf4), mRNA |
0 |
0 |
0 |
5 |
4 |
NM_168651.1 |
CG5444-RB, transcript variant B (Taf4), mRNA |
0 |
0 |
0 |
5 |
2 |
NM_168546.1 |
CG10732-RA, transcript variant A (CG10732), mRNA |
0 |
0 |
0 |
4 |
13 |
NM_206761.1 |
CG33251-RA (CG33251), mRNA |
0 |
0 |
0 |
4 |
9 |
NM_141697.1 |
CG9461-RA (CG9461), mRNA |
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Wing Disc |
GFP
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Puc
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Caspase
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DAPI
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Merge
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Figure
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JNK signal
N |
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+ |
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DB |
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++ |
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DC |
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++ |
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DM |
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++ |
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VM |
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+ |
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VB |
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Caspase-3 signal
N |
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+ |
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DB |
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++ |
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DC |
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++ |
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DM |
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++ |
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VM |
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+ |
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VB |
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Dcompartment |
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Penetrance |
+ |
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