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NIG-RNAi Strains Detail |
Request : Click the "Order" button to request for this stock |
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
Stock ID |
10415R-3 |
Symbol |
TfIIEalpha |
Full Name |
Transcription factor IIEalpha |
CG No |
CG10415 |
Old CG No |
CG10415 |
Synonyms |
TfIIEa, TFIIE, TFIIEalpha, TFIIE-L, CG10415, dTFIIEL, dTFIIE-L, TfIIE, TfIIEalpha |
Accession No (Link to NCBI) |
NM_079302.2 |
Inserted Chr. |
lll |
Insertional Mutation |
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Phenotype induced by Act5C-GAL4 at 28 degrees |
lethal |
Map Viewer |
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Reference
[Please submit your publication]
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Tiwari P, Kumar A, Das RN, Malhotra V, VijayRaghavan K. A Tendon Cell Specific RNAi Screen Reveals Novel Candidates Essential for Muscle Tendon Interaction. PLoS One (2015) 10(10) e0140976
[
PubMed ID = 26488612
]
[
RRC reference
]
Saj A, Arziman Z, Stempfle D, van Belle W, Sauder U, Horn T, Dürrenberger M, Paro R, Boutros M, Merdes G. A combined ex vivo and in vivo RNAi screen for notch regulators in Drosophila reveals an extensive notch interaction network. Dev Cell (2010) 18(5) 862-76
[
PubMed ID = 20493818
]
[
RRC reference
]
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Comment |
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Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
Primer Seq. 5' |
aaggcctacatggccggaccgATGTCGTCGACATCGACGGCT |
Primer Seq. 3' |
aatctagaggtaccGGAACTCCAGCGTGGCCATGT |
Predicted Fragment Size |
499 |
IR fragment full Seq |
0001 ATGTCGTCGA CATCGACGGC TGCAGCGAAC GCAGCGCCAG CGAAAACGGA GGTGCGGTAC
0061 GTGACCGAGG TGCCCAGCAG TCTGAANGCA ACTGGCGCGC CTCGTGGTCC GTGGATTCTA
0121 TTCCCTGGAG GATGCGCTTA TCATCGACAT GCTGGTGCGG AATCCCTGCA TGAAGGAGGA
0181 CGACATCGGC GAGCTGTTGC GCTTTCGAGA AGAAGCAGTT AAGGGCCCGG ATAACCACGC
0241 TGCGCACCGA CAAGTTCATC CAGATCAGGC TTAAAATGGA AACGGGGCCG GATGGTAAGG
0301 CGCAGAAGGT CAATTACTAC TTCATCAACT ACAAGACCTT CGTGAACGTG GTGAAGTACA
0361 AGCTGGATCT CATGCGCAAG CGTATGGNAG ACGGAGGAGC GTGATGCCAC CAGTAGAGCA
0421 AGTTTTAAGT GCTCTTCGTG TTCCAAAACA TTCACGGACC TCGAAGCGGA CCAGCTGTTC
0481 GACATGGCCA CGCTGGAGTT CC |
in silico PCR Fragment |
0001 ATGTCGTCGA CATCGACGGC TGCAGCGAAC GCAGCGCCAG CGAAGACGGA GGTGCGGTAC
0061 GTGACCGAGG TGCCCAGCAG TCTGAA-GCA ACTGGCGCGC CTCGTGGTCC GTGGATTCTA
0121 TTCCCTGGAG GATGCGCTTA TCATCGACAT GCTGGTGCGG AATCCCTGCA TGAAGGAGGA
0181 CGACATCGGC GAGCTGTTGC GC-TTCGAGA AGAAGCAGTT AAGGGCCCGG ATAACCACGC
0241 TGCGCACCGA CAAGTTCATC CAGATCAGGC TTAAAATGGA AACGGGGCCG GATGGTAAGG
0301 CGCAGAAGGT CAATTACTAC TTCATCAACT ACAAGACCTT CGTGAACGTG GTGAAGTACA
0361 AGCTGGATCT CATGCGCAAG CGTATGG-AG ACGGAGGAGC GTGATGCCAC CAGTAGAGCA
0421 AGTTTTAAGT GCTCTTCGTG TTCCAAAACA TTCACGGACC TCGAAGCGGA CCAGCTGTTC
0481 GACATGGCCA CGCTGGAGTT CC |
Assemble Data |
10415R-3.IR_full 1 ATGTCGTCGACATCGACGGCTGCAGCGAACGCAGCGCCAGCGAAAACGGAGGTGCGGTAC 60
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10415R-3.in silico 1 ATGTCGTCGACATCGACGGCTGCAGCGAACGCAGCGCCAGCGAAGACGGAGGTGCGGTAC 60
10415R-3.IR_full 61 GTGACCGAGGTGCCCAGCAGTCTGAANGCAACTGGCGCGCCTCGTGGTCCGTGGATTCTA 120
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10415R-3.in silico 61 GTGACCGAGGTGCCCAGCAGTCTGAA-GCAACTGGCGCGCCTCGTGGTCCGTGGATTCTA 120
10415R-3.IR_full 121 TTCCCTGGAGGATGCGCTTATCATCGACATGCTGGTGCGGAATCCCTGCATGAAGGAGGA 180
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10415R-3.in silico 121 TTCCCTGGAGGATGCGCTTATCATCGACATGCTGGTGCGGAATCCCTGCATGAAGGAGGA 180
10415R-3.IR_full 181 CGACATCGGCGAGCTGTTGCGCTTTCGAGAAGAAGCAGTTAAGGGCCCGGATAACCACGC 240
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10415R-3.in silico 181 CGACATCGGCGAGCTGTTGCGC-TTCGAGAAGAAGCAGTTAAGGGCCCGGATAACCACGC 240
10415R-3.IR_full 241 TGCGCACCGACAAGTTCATCCAGATCAGGCTTAAAATGGAAACGGGGCCGGATGGTAAGG 300
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10415R-3.in silico 241 TGCGCACCGACAAGTTCATCCAGATCAGGCTTAAAATGGAAACGGGGCCGGATGGTAAGG 300
10415R-3.IR_full 301 CGCAGAAGGTCAATTACTACTTCATCAACTACAAGACCTTCGTGAACGTGGTGAAGTACA 360
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10415R-3.in silico 301 CGCAGAAGGTCAATTACTACTTCATCAACTACAAGACCTTCGTGAACGTGGTGAAGTACA 360
10415R-3.IR_full 361 AGCTGGATCTCATGCGCAAGCGTATGGNAGACGGAGGAGCGTGATGCCACCAGTAGAGCA 420
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10415R-3.in silico 361 AGCTGGATCTCATGCGCAAGCGTATGG-AGACGGAGGAGCGTGATGCCACCAGTAGAGCA 420
10415R-3.IR_full 421 AGTTTTAAGTGCTCTTCGTGTTCCAAAACATTCACGGACCTCGAAGCGGACCAGCTGTTC 480
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10415R-3.in silico 421 AGTTTTAAGTGCTCTTCGTGTTCCAAAACATTCACGGACCTCGAAGCGGACCAGCTGTTC 480
10415R-3.IR_full 481 GACATGGCCACGCTGGAGTTCC 502
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10415R-3.in silico 481 GACATGGCCACGCTGGAGTTCC 502
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Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
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cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
100 |
481 |
0 |
0 |
2 |
NM_079302.2 |
CG10415-RA (TfIIEalpha), mRNA |
0.2 |
1 |
4 |
2 |
6 |
NM_130497.2 |
CG13363-RA (Suv4-20), mRNA |
0.2 |
1 |
3 |
3 |
4 |
NM_140915.3 |
CG14183-RA (CG14183), mRNA |
0 |
0 |
3 |
3 |
6 |
NM_143742.2 |
CG5812-RA (GCR(ich)), mRNA |
0 |
0 |
3 |
2 |
2 |
NM_143262.1 |
CG14254-RA (CG14254), mRNA |
0 |
0 |
2 |
4 |
8 |
NM_167487.1 |
CG32577-RA (disco-r), mRNA |
0 |
0 |
1 |
6 |
4 |
NM_166590.1 |
CG30412-RB, transcript variant B (CG30412), mRNA |
0 |
0 |
1 |
6 |
4 |
NM_137933.2 |
CG30412-RA, transcript variant A (CG30412), mRNA |
0 |
0 |
1 |
5 |
8 |
NM_167543.1 |
CG32574-RA (CG32574), mRNA |
0 |
0 |
1 |
4 |
4 |
NM_141189.1 |
CG14640-RA (CG14640), mRNA |
0 |
0 |
1 |
4 |
4 |
NM_078937.3 |
CG2411-RA (ptc), mRNA |
0 |
0 |
1 |
3 |
4 |
NM_167540.1 |
CG32570-RA (CG32570), mRNA |
0 |
0 |
1 |
3 |
4 |
NM_169299.1 |
CG9495-RA (Scm), mRNA |
0 |
0 |
1 |
3 |
3 |
NM_136059.2 |
CG10369-RA (Irk3), mRNA |
0 |
0 |
1 |
2 |
4 |
NM_205957.1 |
CG33304-RA (rho-5), mRNA |
0 |
0 |
1 |
2 |
4 |
NM_143755.2 |
CG14813-RA (deltaCOP), mRNA |
0 |
0 |
1 |
2 |
3 |
NM_143026.1 |
CG6879-RA (CG6879), mRNA |
0 |
0 |
1 |
2 |
3 |
NM_140304.2 |
CG5620-RA, transcript variant A (CG5620), mRNA |
0 |
0 |
1 |
2 |
3 |
NM_206343.1 |
CG5620-RB, transcript variant B (CG5620), mRNA |
0 |
0 |
1 |
2 |
3 |
NM_079412.2 |
CG5123-RA (W), mRNA |
0 |
0 |
0 |
8 |
8 |
NM_138050.2 |
CG3363-RA (CG3363), mRNA |
0 |
0 |
0 |
7 |
9 |
NM_166931.1 |
CG3707-RB, transcript variant B (wapl), mRNA |
0 |
0 |
0 |
7 |
9 |
NM_080303.2 |
CG3707-RA, transcript variant A (wapl), mRNA |
0 |
0 |
0 |
6 |
7 |
NM_135134.2 |
CG9092-RA (Gal), mRNA |
0 |
0 |
0 |
5 |
16 |
NM_001043297.1 |
CG3339-RB, transcript variant B (CG3339), mRNA |
0 |
0 |
0 |
5 |
16 |
NM_143300.1 |
CG3339-RA, transcript variant A (CG3339), mRNA |
0 |
0 |
0 |
5 |
8 |
NM_132987.1 |
CG5613-RA, transcript variant A (CG5613), mRNA |
0 |
0 |
0 |
5 |
8 |
NM_176750.1 |
CG5613-RB, transcript variant B (CG5613), mRNA |
0 |
0 |
0 |
5 |
6 |
NM_057664.4 |
CG15444-RB, transcript variant B (ine), mRNA |
0 |
0 |
0 |
5 |
6 |
NM_175959.1 |
CG15444-RD, transcript variant D (ine), mRNA |
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