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Notice:
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Suspension of shipments during Golden Week Holidays: From 30 April to 14 May, deadline 17 April.
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| NIG-RNAi Strains Detail |
| Request : Click the "Order" button to request for this stock |
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| Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
| Stock ID |
10052R-2 |
| Symbol |
Rx |
Full Name |
Retinal Homeobox |
| CG No |
CG10052 |
Old CG No |
CG10052 |
| Synonyms |
drx, CG10052, DRx, Drx, W60, bk50, PPH17, E97, wom, Rx |
| Accession No (Link to NCBI) |
NM_166413.2 |
| Inserted Chr. |
X |
| Insertional Mutation |
|
| Phenotype induced by Act5C-GAL4 at 28 degrees |
viable |
| Map Viewer |
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Reference
[Please submit your publication]
|
Nitta Y, Yamazaki D, Sugie A, Hiroi M, Tabata T.
DISCO Interacting Protein 2 regulates axonal bifurcation and guidance of Drosophila mushroom body neurons.
Dev Biol (2017) 421(2) 233-244
[
PubMed ID = 27908785
]
[
RRC reference
]
Tiwari P, Kumar A, Das RN, Malhotra V, VijayRaghavan K.
A Tendon Cell Specific RNAi Screen Reveals Novel Candidates Essential for Muscle Tendon Interaction.
PLoS One (2015) 10(10) e0140976
[
PubMed ID = 26488612
]
[
RRC reference
]
Bauke AC, Sasse S, Matzat T, Klämbt C.
A transcriptional network controlling glial development in the Drosophila visual system.
Development (2015) 142(12) 2184-93
[
PubMed ID = 26015542
]
[
RRC reference
]
Umetsu D, Dunst S, Dahmann C.
An RNA interference screen for genes required to shape the anteroposterior compartment boundary in Drosophila identifies the Eph receptor.
PLoS One (2014) 9(12) e114340
[
PubMed ID = 25473846
]
[
RRC reference
]
|
| Comment |
|
| Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
| Primer Seq. 5' |
aaggcctacatggccggaccgCGGTTCAGGTGGTGTGGCCAA |
| Primer Seq. 3' |
aatctagaggtaccTGCGCAACTGCGTCAGGGTCA |
| Predicted Fragment Size |
500 |
| IR fragment full Seq |
0001 CGNTTCAGGT GGTGTGGCCA ACTCGTCCTN CACAGCGGCg GNCAACAATA CCGCCGcCAC
0061 ATTCCAGCAC ATCTTCGAGC AGCTGGTACA GCAGGGCGGC GGAAACCACA AGCTGCCCCC
0121 CAAGCAGCTG GNAGCAACTG CGTNCACCTG CTCGGCAACG TGAGGGACGC CAAGAATCTG
0181 CAGATGATCG TGGAGAAGTT CAAGAATCTG GAGCAGTTCC ACGAGCACTA CGCCNGCCCA
0241 CCTGGCCAAC AACAACACTG TGATCTCAAC GGAAGATAGC AACGACTTGG TTAAGGATAA
0301 TGCCAGGAAG TATGGATCTG GTGGACANAc GCTAACGcCC CGCCACACAA TCGATGNCAT
0361 TCTGGGCCTA AAGAATCGCA ATGGCGCGGC GAATGGCAGT GGCAGGAATC CGGAAACGGT
0421 CAGCGATGGC TCCGTTGATC CCTCCCTGGG TGACGATGAT GCCACTGATC TACGcNGCGG
0481 CATGACNCTG ACGCAGTTGC GCA |
| in silico PCR Fragment |
0001 CGGTTCAGGT GGTGTGGCCA ACTCGTCCTC CACAGCGGCG GCCAACAATA CCGCCGCCAC
0061 ATTCCAGCAC ATCTTCGAGC AGCTGGTACA GCAGGGCGGC GGAAACCACA AGCTGCCCCC
0121 CAAGCAGCTG G-AGCAACTG CGT-CACCTG CTCGGCAACG TGAGGGACGC CAAGAATCTG
0181 CAGATGATCG TGGAGAAGTT CAAGAATCTG GAGCAGTTCC ACGAGCACTA CGCC-GCCCA
0241 CCTGGCTAAC AACAACACTG TGATCTCAAC GGAAGATAGC AACGACTTGG TTAAGGATAA
0301 TGCCAGGAAG TATGGATCTG GTGGACAAAC GCTAACGCCC CGCCACACAA TCGATGCCAT
0361 TCTGGGCCTA AAGAATCGCA ATGGCGCGGC GAATGGCAGT GGCAGGAATC CGGAAACGGT
0421 CAGCGATGGC TCCGTTGATC CCTCCCTGGG TGACGATGAT GCCACTGATC TACGCTGCGG
0481 CATGACCCTG ACGCAGTTGC GCA |
| Assemble Data |
10052R-2.IR_full 1 CGNTTCAGGTGGTGTGGCCAACTCGTCCTNCACAGCGGCGGNCAACAATACCGCCGCCAC 60
|| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
10052R-2.in silico 1 CGGTTCAGGTGGTGTGGCCAACTCGTCCTCCACAGCGGCGGCCAACAATACCGCCGCCAC 60
10052R-2.IR_full 61 ATTCCAGCACATCTTCGAGCAGCTGGTACAGCAGGGCGGCGGAAACCACAAGCTGCCCCC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10052R-2.in silico 61 ATTCCAGCACATCTTCGAGCAGCTGGTACAGCAGGGCGGCGGAAACCACAAGCTGCCCCC 120
10052R-2.IR_full 121 CAAGCAGCTGGNAGCAACTGCGTNCACCTGCTCGGCAACGTGAGGGACGCCAAGAATCTG 180
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
10052R-2.in silico 121 CAAGCAGCTGG-AGCAACTGCGT-CACCTGCTCGGCAACGTGAGGGACGCCAAGAATCTG 180
10052R-2.IR_full 181 CAGATGATCGTGGAGAAGTTCAAGAATCTGGAGCAGTTCCACGAGCACTACGCCNGCCCA 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
10052R-2.in silico 181 CAGATGATCGTGGAGAAGTTCAAGAATCTGGAGCAGTTCCACGAGCACTACGCC-GCCCA 240
10052R-2.IR_full 241 CCTGGCCAACAACAACACTGTGATCTCAACGGAAGATAGCAACGACTTGGTTAAGGATAA 300
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
10052R-2.in silico 241 CCTGGCTAACAACAACACTGTGATCTCAACGGAAGATAGCAACGACTTGGTTAAGGATAA 300
10052R-2.IR_full 301 TGCCAGGAAGTATGGATCTGGTGGACANACGCTAACGCCCCGCCACACAATCGATGNCAT 360
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||
10052R-2.in silico 301 TGCCAGGAAGTATGGATCTGGTGGACAAACGCTAACGCCCCGCCACACAATCGATGCCAT 360
10052R-2.IR_full 361 TCTGGGCCTAAAGAATCGCAATGGCGCGGCGAATGGCAGTGGCAGGAATCCGGAAACGGT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10052R-2.in silico 361 TCTGGGCCTAAAGAATCGCAATGGCGCGGCGAATGGCAGTGGCAGGAATCCGGAAACGGT 420
10052R-2.IR_full 421 CAGCGATGGCTCCGTTGATCCCTCCCTGGGTGACGATGATGCCACTGATCTACGCNGCGG 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
10052R-2.in silico 421 CAGCGATGGCTCCGTTGATCCCTCCCTGGGTGACGATGATGCCACTGATCTACGCTGCGG 480
10052R-2.IR_full 481 CATGACNCTGACGCAGTTGCGCA 503
|||||| ||||||||||||||||
10052R-2.in silico 481 CATGACCCTGACGCAGTTGCGCA 503
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| Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
|
| cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
| 100 |
482 |
0 |
0 |
2 |
NM_166413.2 |
CG10052-RA (Rx), mRNA |
| 0 |
0 |
4 |
4 |
8 |
NM_166896.1 |
CG11491-RB, transcript variant B (br), mRNA |
| 0 |
0 |
4 |
4 |
8 |
NM_166897.1 |
CG11491-RC, transcript variant C (br), mRNA |
| 0 |
0 |
4 |
2 |
2 |
NM_164950.1 |
CG31723-RA (CG31723), mRNA |
| 0 |
0 |
2 |
5 |
15 |
NM_169394.1 |
CG17230-RB, transcript variant B (CG17230), mRNA |
| 0 |
0 |
2 |
5 |
15 |
NM_141820.1 |
CG17230-RA, transcript variant A (CG17230), mRNA |
| 0 |
0 |
2 |
4 |
10 |
NM_001014630.1 |
CG33547-RA (Rim), mRNA |
| 0 |
0 |
2 |
4 |
6 |
NM_079785.2 |
CG8346-RA (HLHm3), mRNA |
| 0 |
0 |
2 |
3 |
8 |
NM_143783.2 |
CG5824-RA (l(3)07882), mRNA |
| 0 |
0 |
2 |
3 |
3 |
NM_166311.1 |
CG15081-RA, transcript variant A (l(2)03709), mRNA |
| 0 |
0 |
2 |
3 |
3 |
NM_143773.2 |
CG15081-RB, transcript variant B (l(2)03709), mRNA |
| 0 |
0 |
2 |
3 |
3 |
NM_166312.1 |
CG15081-RC, transcript variant C (l(2)03709), mRNA |
| 0 |
0 |
2 |
3 |
3 |
NM_133033.1 |
CG12672-RA (CG12672), mRNA |
| 0 |
0 |
2 |
3 |
3 |
NM_132253.1 |
CG12116-RA (CG12116), mRNA |
| 0 |
0 |
2 |
2 |
4 |
NM_165935.1 |
CG8776-RB, transcript variant B (CG8776), mRNA |
| 0 |
0 |
2 |
2 |
4 |
NM_165937.1 |
CG8776-RD, transcript variant D (CG8776), mRNA |
| 0 |
0 |
2 |
2 |
4 |
NM_165936.1 |
CG8776-RC, transcript variant C (CG8776), mRNA |
| 0 |
0 |
2 |
2 |
4 |
NM_165934.1 |
CG8776-RA, transcript variant A (CG8776), mRNA |
| 0 |
0 |
2 |
2 |
4 |
NM_136964.2 |
CG8776-RE, transcript variant E (CG8776), mRNA |
| 0 |
0 |
2 |
2 |
2 |
NM_079107.2 |
CG11173-RA (usnp), mRNA |
| 0 |
0 |
1 |
8 |
12 |
NM_135755.1 |
CG9932-RA (CG9932), mRNA |
| 0 |
0 |
1 |
5 |
4 |
NM_140385.2 |
CG10724-RA, transcript variant A (CG10724), mRNA |
| 0 |
0 |
1 |
5 |
4 |
NM_168543.1 |
CG10724-RB, transcript variant B (CG10724), mRNA |
| 0 |
0 |
1 |
4 |
7 |
NM_058156.2 |
CG9280-RA, transcript variant A (Glt), mRNA |
| 0 |
0 |
1 |
4 |
7 |
NM_164831.1 |
CG9280-RB, transcript variant B (Glt), mRNA |
| 0 |
0 |
1 |
4 |
7 |
NM_164832.1 |
CG9280-RC, transcript variant C (Glt), mRNA |
| 0 |
0 |
1 |
4 |
2 |
NM_057261.2 |
CG3821-RA (Aats-asp), mRNA |
| 0 |
0 |
1 |
3 |
5 |
NM_142053.1 |
CG14366-RA (CG14366), mRNA |
| 0 |
0 |
1 |
3 |
4 |
NM_143456.1 |
CG7592-RA (Obp99b), mRNA |
| 0 |
0 |
1 |
3 |
3 |
NM_130691.1 |
CG4116-RA (CG4116), mRNA |
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