Notice:
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Suspension of shipments during Golden Week Holidays: From 30 April to 14 May, deadline 17 April.
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NIG-RNAi Strains Detail |
Request : Click the "Order" button to request for this stock |
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
Stock ID |
10033R-2 |
Symbol |
for |
Full Name |
foraging |
CG No |
CG10033 |
Old CG No |
CG10033 |
Synonyms |
FOR/PKG, 142251_at, dg2, CG10033, DG2, PKG, l(2)06860, Pkg24A, Pkg2, Dg2, BcDNA:GM08338, anon-WO02059370.47, anon-WO0140519.260, for |
Accession No (Link to NCBI) |
NM_058139.3 |
Inserted Chr. |
ll |
Insertional Mutation |
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Phenotype induced by Act5C-GAL4 at 28 degrees |
lethal |
Map Viewer |
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Reference
[Please submit your publication]
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Swarup S, Pradhan-Sundd T, Verheyen EM. Genome-wide identification of phospho-regulators of Wnt signaling in Drosophila. Development (2015) 142(8) 1502-15
[
PubMed ID = 25852200
]
[
RRC reference
]
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Comment |
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Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
Primer Seq. 5' |
aaggcctacatggccggaccgTGCGTTTCTGCTTTGATCGGC |
Primer Seq. 3' |
aatctagaggtaccTGCTTTTCGTAACGCCTCCGT |
Predicted Fragment Size |
500 |
IR fragment full Seq |
0001 TGCGTTTCTG CTTTGATCGG CtgTGTCTGT CGCAACCAAG CGGCCAGCCC AAAACTCCAA
0061 CAGCAATGCA CCACACAGCA GCACCACAGT AGATGCACCA CCACGTCCAG CGGATGTAGA
0121 TGTAGCCACT GTACCAGTAG CAACACCAGC ACCACCACCA CAACAGCCAG TTAGTAATCT
0181 GTTCTATGCC GACTACCAGA AGCTGCAGCC GGCGATAATC GATCGGGACT GGGAGCGGGA
0241 CAGAGATACA GATACAGATA CCAGGAGCGA GGCCAAGCCA CCGGACATTG TGGAGCACAT
0301 AGAACCCGTA GAGGAGCAGA GACAGATACA CACACAGATA CAGTCGCCGG CAGAGATACA
0361 GATACAGATA CCCCCGACGC CCCCTGCCCC ATCGATACAG ATACAGATAC AGCAGcGCTA
0421 TCGCCGGCAC AGCAGTGCCG AAGATCGCAA TCTGAACACG AGGCGAAACG ATTCGAATAT
0481 TACGGAGGCG TTACGAAAAG CA |
in silico PCR Fragment |
0001 TGCGTTTCTG CTTTGATCGG CTGTG-CT-T CGCAACCAAG CGGCCAGCCC AAAACTCCAA
0061 CAGCAATGCA CCACACAGCA GCACCACAGT AGATGCACCA CCACGTCCAG CGGATGTAGA
0121 TGTAGCCACT GTACCAGTAG CAACACCAGC ACCACCACCA CAACAGCCAG TTAGTAATCT
0181 GTTCTATGCC GACTACCAGA AGCTGCAGCC GGCGATAATC GATCGGGACT GGGAGCGGGA
0241 CAGAGATACA GATACAGATA CCAGGAGCGA GGCCAAGCCA CCGGACATTG TGGAGCACAT
0301 AGAACCCGTA GAGGAGCAGA GACAGATACA CACACAGATA CAGTCGCCGG CAGAGATACA
0361 GATACAGATA CCCCCGACGC CCCCTGCCCC ATCGATACAG ATACAGATAC AGCAGCGCTA
0421 TCGCCGGCAC AGCAGTGCCG AAGATCGCAA TCTGAACACG AGGCGAAACG ATTCGAATAT
0481 TACGGAGGCG TTACGAAAAG CA |
Assemble Data |
10033R-2.IR_full 1 TGCGTTTCTGCTTTGATCGGCTGTGTCTGTCGCAACCAAGCGGCCAGCCCAAAACTCCAA 60
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10033R-2.in silico 1 TGCGTTTCTGCTTTGATCGGCTGTG-CT-TCGCAACCAAGCGGCCAGCCCAAAACTCCAA 60
10033R-2.IR_full 61 CAGCAATGCACCACACAGCAGCACCACAGTAGATGCACCACCACGTCCAGCGGATGTAGA 120
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10033R-2.in silico 61 CAGCAATGCACCACACAGCAGCACCACAGTAGATGCACCACCACGTCCAGCGGATGTAGA 120
10033R-2.IR_full 121 TGTAGCCACTGTACCAGTAGCAACACCAGCACCACCACCACAACAGCCAGTTAGTAATCT 180
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10033R-2.in silico 121 TGTAGCCACTGTACCAGTAGCAACACCAGCACCACCACCACAACAGCCAGTTAGTAATCT 180
10033R-2.IR_full 181 GTTCTATGCCGACTACCAGAAGCTGCAGCCGGCGATAATCGATCGGGACTGGGAGCGGGA 240
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10033R-2.in silico 181 GTTCTATGCCGACTACCAGAAGCTGCAGCCGGCGATAATCGATCGGGACTGGGAGCGGGA 240
10033R-2.IR_full 241 CAGAGATACAGATACAGATACCAGGAGCGAGGCCAAGCCACCGGACATTGTGGAGCACAT 300
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10033R-2.in silico 241 CAGAGATACAGATACAGATACCAGGAGCGAGGCCAAGCCACCGGACATTGTGGAGCACAT 300
10033R-2.IR_full 301 AGAACCCGTAGAGGAGCAGAGACAGATACACACACAGATACAGTCGCCGGCAGAGATACA 360
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10033R-2.in silico 301 AGAACCCGTAGAGGAGCAGAGACAGATACACACACAGATACAGTCGCCGGCAGAGATACA 360
10033R-2.IR_full 361 GATACAGATACCCCCGACGCCCCCTGCCCCATCGATACAGATACAGATACAGCAGCGCTA 420
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10033R-2.in silico 361 GATACAGATACCCCCGACGCCCCCTGCCCCATCGATACAGATACAGATACAGCAGCGCTA 420
10033R-2.IR_full 421 TCGCCGGCACAGCAGTGCCGAAGATCGCAATCTGAACACGAGGCGAAACGATTCGAATAT 480
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10033R-2.in silico 421 TCGCCGGCACAGCAGTGCCGAAGATCGCAATCTGAACACGAGGCGAAACGATTCGAATAT 480
10033R-2.IR_full 481 TACGGAGGCGTTACGAAAAGCA 502
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10033R-2.in silico 481 TACGGAGGCGTTACGAAAAGCA 502
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Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
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cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
101.65 |
490 |
7 |
33 |
52 |
NM_058139.3 |
CG10033-RA, transcript variant A (for), mRNA |
101.65 |
490 |
7 |
33 |
52 |
NM_205904.1 |
CG10033-RI, transcript variant I (for), mRNA |
101.65 |
490 |
7 |
33 |
52 |
NM_205906.1 |
CG10033-RH, transcript variant H (for), mRNA |
1.03 |
5 |
20 |
38 |
41 |
NM_166453.1 |
CG30282-RA (CG30282), mRNA |
1.03 |
5 |
12 |
25 |
26 |
NM_206186.2 |
CG13439-RA (dpr), mRNA |
1.03 |
5 |
7 |
12 |
24 |
NM_080377.2 |
CG10207-RA (NaPi-T), mRNA |
0.62 |
3 |
32 |
62 |
105 |
NM_132042.1 |
CG11462-RA (CG11462), mRNA |
0.62 |
3 |
3 |
4 |
21 |
NM_169453.1 |
CG10095-RA (dpr15), mRNA |
0.41 |
2 |
22 |
38 |
42 |
NM_135676.2 |
CG14940-RA (Pde1c), mRNA |
0.2 |
1 |
20 |
42 |
89 |
NM_137912.1 |
CG9876-RA (CG9876), mRNA |
0.2 |
1 |
16 |
35 |
82 |
NM_140928.2 |
CG32223-RA (CG32223), mRNA |
0.2 |
1 |
10 |
29 |
59 |
NM_141665.2 |
CG8348-RA (Dh), mRNA |
0.2 |
1 |
9 |
20 |
29 |
NM_130604.2 |
CG17766-RA (CG17766), mRNA |
0.2 |
1 |
7 |
3 |
10 |
NM_168903.2 |
CG5683-RA, transcript variant A (Aef1), mRNA |
0.2 |
1 |
7 |
3 |
10 |
NM_168904.2 |
CG5683-RC, transcript variant C (Aef1), mRNA |
0.2 |
1 |
7 |
3 |
10 |
NM_079476.2 |
CG5683-RB, transcript variant B (Aef1), mRNA |
0.2 |
1 |
2 |
15 |
40 |
NM_168489.1 |
CG32096-RC, transcript variant C (rols), mRNA |
0.2 |
1 |
2 |
15 |
40 |
NM_168488.1 |
CG32096-RA, transcript variant A (rols), mRNA |
0.2 |
1 |
2 |
15 |
40 |
NM_168490.1 |
CG32096-RE, transcript variant E (rols), mRNA |
0.2 |
1 |
2 |
15 |
40 |
NM_140285.2 |
CG32096-RD, transcript variant D (rols), mRNA |
0.2 |
1 |
2 |
3 |
25 |
NM_079853.2 |
CG15532-RA, transcript variant A (hdc), mRNA |
0.2 |
1 |
2 |
3 |
25 |
NM_176591.1 |
CG15532-RC, transcript variant C (hdc), mRNA |
0 |
0 |
12 |
24 |
40 |
NM_143973.2 |
CG17278-RA (CG17278), mRNA |
0 |
0 |
10 |
30 |
44 |
NM_131977.1 |
CG6789-RA (CG6789), mRNA |
0 |
0 |
8 |
17 |
31 |
NM_078714.5 |
CG9559-RA, transcript variant A (fog), mRNA |
0 |
0 |
8 |
17 |
31 |
NM_001038771.2 |
CG9559-RB, transcript variant B (fog), mRNA |
0 |
0 |
7 |
19 |
38 |
NM_001032406.1 |
CG33956-RB, transcript variant B (kay), mRNA |
0 |
0 |
7 |
11 |
42 |
NM_206191.1 |
CG15669-RF, transcript variant F (MESK2), mRNA |
0 |
0 |
7 |
11 |
42 |
NM_079080.2 |
CG15669-RD, transcript variant D (MESK2), mRNA |
0 |
0 |
7 |
11 |
42 |
NM_206190.1 |
CG15669-RE, transcript variant E (MESK2), mRNA |
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